Wall clock time and date at job start Mon Mar 30 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46965 * 110.99656 * 2 1 4 4 C 1.53049 * 109.36244 * 183.18840 * 3 2 1 5 5 N 1.46957 * 109.36460 * 301.60095 * 4 3 2 6 6 C 1.46900 * 110.99875 * 183.19242 * 5 4 3 7 7 H 1.08992 * 109.47469 * 54.99662 * 6 5 4 8 8 C 1.50703 * 109.46786 * 294.99239 * 6 5 4 9 9 H 1.07999 * 120.00476 * 294.66716 * 8 6 5 10 10 C 1.37881 * 119.99797 * 114.93710 * 8 6 5 11 11 N 1.31519 * 119.99681 * 5.03406 * 10 8 6 12 12 Si 1.86796 * 120.00150 * 185.03127 * 10 8 6 13 13 H 1.48501 * 109.46968 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47045 * 119.99942 * 12 10 8 15 15 H 1.48495 * 109.47207 * 240.00166 * 12 10 8 16 16 C 1.52998 * 109.46895 * 174.99946 * 6 5 4 17 17 C 1.54265 * 110.03350 * 302.07695 * 16 6 5 18 18 C 1.54968 * 104.15778 * 217.13946 * 17 16 6 19 19 C 1.54890 * 102.77764 * 37.88781 * 18 17 16 20 20 C 1.53879 * 110.03217 * 184.85877 * 16 6 5 21 21 C 1.46954 * 110.88206 * 59.31772 * 5 4 3 22 22 C 1.46951 * 111.00007 * 123.79600 * 2 1 3 23 23 H 1.08997 * 109.47439 * 60.00205 * 1 2 3 24 24 H 1.09000 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47122 * 299.99843 * 1 2 3 26 26 H 1.09003 * 109.48566 * 63.22124 * 3 2 1 27 27 H 1.09001 * 109.50390 * 303.16851 * 3 2 1 28 28 H 1.08994 * 109.48697 * 181.63451 * 4 3 2 29 29 H 1.08997 * 109.48719 * 61.56447 * 4 3 2 30 30 H 0.97003 * 119.99818 * 179.97438 * 11 10 8 31 31 H 1.08999 * 110.02189 * 63.46986 * 16 6 5 32 32 H 1.08997 * 110.48407 * 335.78107 * 17 16 6 33 33 H 1.08998 * 110.48800 * 98.42855 * 17 16 6 34 34 H 1.08993 * 110.71760 * 279.56791 * 18 17 16 35 35 H 1.09001 * 110.92222 * 156.29216 * 18 17 16 36 36 H 1.09005 * 110.48118 * 203.40347 * 19 18 17 37 37 H 1.09000 * 110.59795 * 80.81940 * 19 18 17 38 38 H 1.09001 * 110.03083 * 238.57323 * 20 16 6 39 39 H 1.08998 * 110.02833 * 359.94805 * 20 16 6 40 40 H 1.09002 * 109.48755 * 60.65255 * 21 5 4 41 41 H 1.09004 * 109.48919 * 180.71129 * 21 5 4 42 42 H 1.08998 * 109.49620 * 296.78121 * 22 2 1 43 43 H 1.09001 * 109.48917 * 56.85070 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5191 0.5661 1.0598 7 1 5.8824 1.5935 1.0383 8 6 6.0214 -0.1700 -0.1555 9 1 5.8335 -1.2282 -0.2620 10 6 6.7258 0.5064 -1.1289 11 7 7.0451 1.7698 -0.9513 12 14 7.2267 -0.3717 -2.6997 13 1 6.7497 -1.7773 -2.6546 14 1 6.6218 0.3187 -3.8671 15 1 8.7061 -0.3543 -2.8263 16 6 6.0291 -0.1288 2.3238 17 6 5.4795 0.5836 3.5769 18 6 6.6497 0.5235 4.5910 19 6 7.8928 0.7407 3.6928 20 6 7.5629 -0.0295 2.3976 21 6 3.5235 -0.8059 1.0598 22 6 1.9957 -0.7631 1.1401 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6937 1.8774 0.9174 27 1 1.6012 1.9132 -0.8601 28 1 3.9177 2.3449 -0.0512 29 1 3.8253 0.8481 -1.0106 30 1 7.5410 2.2456 -1.6359 31 1 5.7223 -1.1747 2.3243 32 1 5.2268 1.6187 3.3471 33 1 4.6093 0.0547 3.9656 34 1 6.6895 -0.4515 5.0766 35 1 6.5644 1.3189 5.3313 36 1 8.7828 0.3265 4.1668 37 1 8.0326 1.8008 3.4813 38 1 8.0003 -1.0272 2.4346 39 1 7.9439 0.5130 1.5324 40 1 3.8254 -1.3114 0.1424 41 1 3.9178 -1.3469 1.9200 42 1 1.6938 -0.2820 2.0704 43 1 1.6014 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:21 Heat of formation + Delta-G solvation = -4.602945 kcal Electronic energy + Delta-G solvation = -20328.904831 eV Core-core repulsion = 17601.090928 eV Total energy + Delta-G solvation = -2727.813903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.76153 -37.23544 -34.61666 -32.28401 -30.22529 -29.48390 -27.80005 -26.89262 -25.32442 -23.30996 -22.73048 -21.19576 -19.89733 -18.93927 -18.15647 -16.31306 -15.69060 -14.75298 -14.61010 -14.42153 -14.34259 -14.14601 -13.62938 -13.30375 -12.91544 -12.46728 -12.42208 -11.92195 -11.76552 -11.54099 -11.19819 -10.99459 -10.86677 -10.51112 -10.42342 -10.37518 -10.31104 -10.15668 -10.04477 -9.90538 -9.67867 -9.39751 -9.27555 -8.78350 -8.50122 -7.90326 -6.96640 -5.99329 -4.09498 3.27191 3.36648 3.41235 4.40753 4.42245 5.06769 5.38487 5.43018 5.50331 5.53623 5.55620 5.61459 5.74609 5.79934 6.00515 6.03127 6.10075 6.14570 6.26071 6.29436 6.30317 6.37535 6.47255 6.50864 6.53419 6.65836 6.73257 6.80655 6.96884 6.99353 7.07811 7.20584 7.27066 7.28771 7.46860 7.50662 7.57229 7.81747 7.87401 8.28486 8.38321 8.64550 9.07163 9.57224 11.01012 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.010440 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.685782 B = 2681.336667 C = 4142.958757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.542 5.542 3 C 0.059 3.941 4 C 0.075 3.925 5 N -0.536 5.536 6 C 0.197 3.803 7 H 0.080 0.920 8 C -0.530 4.530 9 H 0.051 0.949 10 C 0.077 3.923 11 N -0.887 5.887 12 Si 0.880 3.120 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.070 4.070 17 C -0.105 4.105 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.107 4.107 21 C 0.061 3.939 22 C 0.060 3.940 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.018 0.982 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.261 0.739 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 -1.638 5.683 8.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.070 4.070 4 C -0.054 4.054 5 N -0.261 5.261 6 C 0.092 3.908 7 H 0.098 0.902 8 C -0.570 4.570 9 H 0.069 0.931 10 C -0.127 4.127 11 N -0.525 5.525 12 Si 0.708 3.292 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.090 4.090 17 C -0.142 4.142 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.145 4.145 21 C -0.068 4.068 22 C -0.068 4.068 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.316 -1.476 5.600 8.569 hybrid contribution 0.295 -0.533 -1.018 1.186 sum -6.021 -2.009 4.582 7.829 Atomic orbital electron populations 1.22312 0.88665 1.01219 0.99951 1.62130 1.06412 1.14788 1.43386 1.22266 0.97210 0.88171 0.99308 1.21721 0.90358 0.98588 0.94704 1.62848 1.11580 1.11211 1.40448 1.19691 0.81900 0.98713 0.90526 0.90154 1.21581 1.35049 0.95603 1.04745 0.93089 1.24924 0.95039 0.94752 0.97951 1.69894 1.39280 1.09182 1.34170 0.86730 0.78116 0.80185 0.84157 1.19853 1.21030 1.21149 1.21764 0.94007 0.98199 0.95006 1.22309 0.95812 1.01061 0.95055 1.22549 0.96658 0.99841 0.97509 1.22364 0.96600 1.00400 0.96749 1.22003 0.96449 0.98792 0.97217 1.21908 0.91246 0.92943 1.00733 1.22211 0.96929 0.96789 0.90913 0.91953 0.92043 0.96315 0.95193 0.91740 0.91493 0.93314 0.92939 0.93466 0.91804 0.93345 0.92778 0.93080 0.93361 0.92233 0.93933 0.89815 0.93634 0.91749 0.95166 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.60 60.07 0.58 0.94 16 2 N -0.54 -9.31 4.97 -242.75 -1.21 -10.52 16 3 C 0.06 1.04 5.62 -3.76 -0.02 1.02 16 4 C 0.08 1.60 5.33 -3.77 -0.02 1.58 16 5 N -0.54 -11.41 4.25 -227.88 -0.97 -12.38 16 6 C 0.20 4.58 1.33 -68.86 -0.09 4.49 16 7 H 0.08 2.14 6.89 -51.93 -0.36 1.79 16 8 C -0.53 -13.59 5.47 -34.44 -0.19 -13.78 16 9 H 0.05 1.36 7.02 -52.49 -0.37 1.00 16 10 C 0.08 2.02 5.45 -17.82 -0.10 1.92 16 11 N -0.89 -24.16 12.62 55.43 0.70 -23.46 16 12 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 C -0.07 -1.45 2.03 -89.50 -0.18 -1.64 16 17 C -0.10 -1.91 5.95 -25.03 -0.15 -2.06 16 18 C -0.13 -2.06 6.91 -24.69 -0.17 -2.23 16 19 C -0.12 -2.14 6.83 -25.08 -0.17 -2.31 16 20 C -0.11 -2.16 6.08 -25.61 -0.16 -2.32 16 21 C 0.06 1.20 4.94 -3.77 -0.02 1.18 16 22 C 0.06 1.02 5.62 -3.77 -0.02 1.00 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.50 8.12 -51.93 -0.42 1.08 16 29 H 0.05 1.19 7.36 -51.93 -0.38 0.80 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.05 0.99 6.58 -51.93 -0.34 0.65 16 32 H 0.06 1.25 7.85 -51.93 -0.41 0.84 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.98 7.30 -51.93 -0.38 1.60 16 40 H 0.05 1.02 6.73 -51.93 -0.35 0.67 16 41 H 0.06 1.24 6.26 -51.93 -0.32 0.91 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -26.18 322.10 -10.32 -36.49 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.96 Total: 1.21 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.71 Total: -12.20 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -1.48 Total: -46.35 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.18 -10.32 -36.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.889 kcal (2) G-P(sol) polarization free energy of solvation -26.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds