Wall clock time and date at job start Mon Mar 30 2020 04:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46965 * 110.99656 * 2 1 4 4 C 1.53049 * 109.36244 * 183.18840 * 3 2 1 5 5 N 1.46957 * 109.36460 * 301.60095 * 4 3 2 6 6 C 1.46900 * 110.99875 * 183.19242 * 5 4 3 7 7 H 1.08992 * 109.47469 * 54.99662 * 6 5 4 8 8 C 1.50703 * 109.46786 * 294.99239 * 6 5 4 9 9 H 1.07999 * 120.00476 * 294.66716 * 8 6 5 10 10 C 1.37881 * 119.99797 * 114.93710 * 8 6 5 11 11 N 1.31519 * 119.99681 * 5.03406 * 10 8 6 12 12 Si 1.86796 * 120.00150 * 185.03127 * 10 8 6 13 13 H 1.48501 * 109.46968 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47045 * 119.99942 * 12 10 8 15 15 H 1.48495 * 109.47207 * 240.00166 * 12 10 8 16 16 C 1.52998 * 109.46895 * 174.99946 * 6 5 4 17 17 C 1.54265 * 110.03350 * 302.07695 * 16 6 5 18 18 C 1.54968 * 104.15778 * 217.13946 * 17 16 6 19 19 C 1.54890 * 102.77764 * 37.88781 * 18 17 16 20 20 C 1.53879 * 110.03217 * 184.85877 * 16 6 5 21 21 C 1.46954 * 110.88206 * 59.31772 * 5 4 3 22 22 C 1.46951 * 111.00007 * 123.79600 * 2 1 3 23 23 H 1.08997 * 109.47439 * 60.00205 * 1 2 3 24 24 H 1.09000 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47122 * 299.99843 * 1 2 3 26 26 H 1.09003 * 109.48566 * 63.22124 * 3 2 1 27 27 H 1.09001 * 109.50390 * 303.16851 * 3 2 1 28 28 H 1.08994 * 109.48697 * 181.63451 * 4 3 2 29 29 H 1.08997 * 109.48719 * 61.56447 * 4 3 2 30 30 H 0.97003 * 119.99818 * 179.97438 * 11 10 8 31 31 H 1.08999 * 110.02189 * 63.46986 * 16 6 5 32 32 H 1.08997 * 110.48407 * 335.78107 * 17 16 6 33 33 H 1.08998 * 110.48800 * 98.42855 * 17 16 6 34 34 H 1.08993 * 110.71760 * 279.56791 * 18 17 16 35 35 H 1.09001 * 110.92222 * 156.29216 * 18 17 16 36 36 H 1.09005 * 110.48118 * 203.40347 * 19 18 17 37 37 H 1.09000 * 110.59795 * 80.81940 * 19 18 17 38 38 H 1.09001 * 110.03083 * 238.57323 * 20 16 6 39 39 H 1.08998 * 110.02833 * 359.94805 * 20 16 6 40 40 H 1.09002 * 109.48755 * 60.65255 * 21 5 4 41 41 H 1.09004 * 109.48919 * 180.71129 * 21 5 4 42 42 H 1.08998 * 109.49620 * 296.78121 * 22 2 1 43 43 H 1.09001 * 109.48917 * 56.85070 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5191 0.5661 1.0598 7 1 5.8824 1.5935 1.0383 8 6 6.0214 -0.1700 -0.1555 9 1 5.8335 -1.2282 -0.2620 10 6 6.7258 0.5064 -1.1289 11 7 7.0451 1.7698 -0.9513 12 14 7.2267 -0.3717 -2.6997 13 1 6.7497 -1.7773 -2.6546 14 1 6.6218 0.3187 -3.8671 15 1 8.7061 -0.3543 -2.8263 16 6 6.0291 -0.1288 2.3238 17 6 5.4795 0.5836 3.5769 18 6 6.6497 0.5235 4.5910 19 6 7.8928 0.7407 3.6928 20 6 7.5629 -0.0295 2.3976 21 6 3.5235 -0.8059 1.0598 22 6 1.9957 -0.7631 1.1401 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6937 1.8774 0.9174 27 1 1.6012 1.9132 -0.8601 28 1 3.9177 2.3449 -0.0512 29 1 3.8253 0.8481 -1.0106 30 1 7.5410 2.2456 -1.6359 31 1 5.7223 -1.1747 2.3243 32 1 5.2268 1.6187 3.3471 33 1 4.6093 0.0547 3.9656 34 1 6.6895 -0.4515 5.0766 35 1 6.5644 1.3189 5.3313 36 1 8.7828 0.3265 4.1668 37 1 8.0326 1.8008 3.4813 38 1 8.0003 -1.0272 2.4346 39 1 7.9439 0.5130 1.5324 40 1 3.8254 -1.3114 0.1424 41 1 3.9178 -1.3469 1.9200 42 1 1.6938 -0.2820 2.0704 43 1 1.6014 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:20 Heat of formation + Delta-G solvation = -20.596024 kcal Electronic energy + Delta-G solvation = -20329.598342 eV Core-core repulsion = 17601.090928 eV Total energy + Delta-G solvation = -2728.507415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.37114 -38.72016 -36.20264 -34.23362 -31.79185 -31.07849 -29.32318 -28.29868 -27.21110 -24.81244 -24.28621 -22.86281 -21.32672 -20.52345 -19.88269 -18.29625 -17.24722 -16.56667 -16.08832 -15.94107 -15.78180 -15.62459 -15.19950 -14.88590 -14.70847 -13.97707 -13.95868 -13.38224 -13.22740 -13.17043 -12.93786 -12.78473 -12.48074 -12.28389 -12.04415 -11.89381 -11.72893 -11.71167 -11.61720 -11.47231 -11.32204 -11.11649 -11.04678 -10.67386 -10.48100 -9.21987 -8.82478 -8.02562 -6.18897 1.31696 1.36734 1.45006 2.40331 3.10838 3.12953 3.59564 4.05875 4.07222 4.12626 4.18422 4.25815 4.34497 4.54132 4.59344 4.70638 4.73117 4.77938 4.79572 4.82957 4.94134 4.95850 4.98783 5.02616 5.04368 5.15056 5.20243 5.28738 5.29702 5.34052 5.43460 5.55948 5.57300 5.64517 5.70710 5.78920 5.99313 6.15565 6.23672 6.32868 6.54535 6.83097 7.04398 7.48939 8.94471 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.010440 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.685782 B = 2681.336667 C = 4142.958757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.562 5.562 3 C 0.070 3.930 4 C 0.082 3.918 5 N -0.531 5.531 6 C 0.205 3.795 7 H 0.041 0.959 8 C -0.528 4.528 9 H 0.036 0.964 10 C 0.036 3.964 11 N -0.912 5.912 12 Si 0.928 3.072 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.281 1.281 16 C -0.070 4.070 17 C -0.098 4.098 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.107 4.107 21 C 0.065 3.935 22 C 0.067 3.933 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.013 0.987 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 -2.555 7.232 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.288 5.288 3 C -0.058 4.058 4 C -0.048 4.048 5 N -0.255 5.255 6 C 0.099 3.901 7 H 0.060 0.940 8 C -0.568 4.568 9 H 0.054 0.946 10 C -0.165 4.165 11 N -0.552 5.552 12 Si 0.756 3.244 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.207 1.207 16 C -0.089 4.089 17 C -0.135 4.135 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.145 4.145 21 C -0.064 4.064 22 C -0.061 4.061 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.775 -2.404 7.150 10.833 hybrid contribution 0.723 -0.272 -1.525 1.710 sum -7.052 -2.675 5.625 9.409 Atomic orbital electron populations 1.22369 0.85849 1.02654 1.00958 1.62097 1.08981 1.14009 1.43665 1.22085 0.94083 0.89279 1.00347 1.21608 0.93357 0.96887 0.92900 1.62821 1.10279 1.12343 1.40032 1.19464 0.83115 0.96347 0.91184 0.94046 1.21703 1.34450 0.94812 1.05796 0.94572 1.25453 0.95528 0.95316 1.00180 1.70001 1.40258 1.10150 1.34754 0.85971 0.77856 0.79097 0.81513 1.19973 1.21057 1.20716 1.21696 0.94369 0.97839 0.95001 1.22197 0.97239 0.99647 0.94453 1.22504 0.94172 1.01768 0.96957 1.22323 0.98479 0.99406 0.95435 1.21946 0.96140 0.98984 0.97437 1.21914 0.93797 0.91334 0.99361 1.22136 0.94336 0.98289 0.91302 0.90943 0.90441 0.95246 0.94419 0.90285 0.93613 0.97099 0.93139 0.93744 0.93553 0.92080 0.90866 0.90878 0.90962 0.93218 0.93346 0.93980 0.96825 0.91096 0.94335 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.60 127.69 1.23 1.92 16 2 N -0.56 -18.17 4.97 -921.93 -4.58 -22.75 16 3 C 0.07 2.43 5.62 86.31 0.49 2.91 16 4 C 0.08 3.59 5.33 86.31 0.46 4.05 16 5 N -0.53 -23.00 4.25 -874.89 -3.72 -26.72 16 6 C 0.21 9.91 1.33 44.17 0.06 9.97 16 7 H 0.04 2.34 6.89 -2.39 -0.02 2.32 16 8 C -0.53 -28.20 5.47 25.60 0.14 -28.06 16 9 H 0.04 2.01 7.02 -2.91 -0.02 1.99 16 10 C 0.04 1.95 5.45 84.66 0.46 2.42 16 11 N -0.91 -51.99 12.62 21.45 0.27 -51.71 16 12 Si 0.93 44.43 29.54 68.60 2.03 46.46 16 13 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 16 C -0.07 -2.90 2.03 -10.07 -0.02 -2.92 16 17 C -0.10 -3.43 5.95 31.70 0.19 -3.25 16 18 C -0.12 -3.41 6.91 31.91 0.22 -3.19 16 19 C -0.12 -3.95 6.83 31.67 0.22 -3.73 16 20 C -0.11 -4.38 6.08 31.32 0.19 -4.19 16 21 C 0.06 2.54 4.94 86.31 0.43 2.97 16 22 C 0.07 2.14 5.62 86.31 0.49 2.63 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.08 1.60 8.13 -2.39 -0.02 1.58 16 25 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 2.15 8.12 -2.39 -0.02 2.13 16 29 H 0.01 0.55 7.36 -2.39 -0.02 0.53 16 30 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.04 1.85 6.58 -2.39 -0.02 1.84 16 32 H 0.05 1.78 7.85 -2.39 -0.02 1.77 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 2.07 7.30 -2.39 -0.02 2.05 16 40 H 0.01 0.62 6.73 -2.39 -0.02 0.60 16 41 H 0.07 2.66 6.26 -2.38 -0.01 2.65 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 2.36 8.13 -2.39 -0.02 2.34 16 Total: -1.00 -58.78 322.10 -0.52 -59.30 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.94 Total: 13.90 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.54 Total: -18.47 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -8.03 Total: -101.19 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -58.78 -0.52 -59.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.703 kcal (2) G-P(sol) polarization free energy of solvation -58.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds