Wall clock time and date at job start Mon Mar 30 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 111.00435 * 2 1 4 4 C 1.53043 * 109.36748 * 176.80877 * 3 2 1 5 5 N 1.46960 * 109.38027 * 58.39337 * 4 3 2 6 6 C 1.46904 * 111.00085 * 176.82258 * 5 4 3 7 7 H 1.09004 * 109.47067 * 307.77940 * 6 5 4 8 8 C 1.50696 * 109.46929 * 67.77840 * 6 5 4 9 9 H 1.08002 * 120.00696 * 3.49951 * 8 6 5 10 10 C 1.37881 * 119.99973 * 183.49639 * 8 6 5 11 11 N 1.31516 * 119.99642 * 31.31789 * 10 8 6 12 12 Si 1.86795 * 120.00473 * 211.31554 * 10 8 6 13 13 H 1.48499 * 109.47142 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47231 * 120.00027 * 12 10 8 15 15 H 1.48507 * 109.47227 * 240.00394 * 12 10 8 16 16 C 1.53000 * 109.46920 * 187.78126 * 6 5 4 17 17 C 1.54271 * 110.02896 * 171.13924 * 16 6 5 18 18 C 1.54883 * 104.19649 * 217.10243 * 17 16 6 19 19 C 1.54888 * 102.74835 * 37.94280 * 18 17 16 20 20 C 1.53872 * 110.03409 * 53.97709 * 16 6 5 21 21 C 1.46955 * 110.87832 * 300.70908 * 5 4 3 22 22 C 1.46957 * 110.99840 * 236.20105 * 2 1 3 23 23 H 1.09007 * 109.46986 * 59.99410 * 1 2 3 24 24 H 1.08997 * 109.47542 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47432 * 299.99989 * 1 2 3 26 26 H 1.09001 * 109.48538 * 56.84143 * 3 2 1 27 27 H 1.08996 * 109.50673 * 296.79407 * 3 2 1 28 28 H 1.09004 * 109.49089 * 178.36593 * 4 3 2 29 29 H 1.08999 * 109.49533 * 298.41628 * 4 3 2 30 30 H 0.97001 * 120.00204 * 184.80209 * 11 10 8 31 31 H 1.08993 * 110.01726 * 292.57752 * 16 6 5 32 32 H 1.08998 * 110.48673 * 335.78435 * 17 16 6 33 33 H 1.09001 * 110.48510 * 98.42946 * 17 16 6 34 34 H 1.09004 * 110.76085 * 279.63135 * 18 17 16 35 35 H 1.08996 * 110.91768 * 156.33147 * 18 17 16 36 36 H 1.08997 * 110.49041 * 203.37786 * 19 18 17 37 37 H 1.09004 * 110.48800 * 80.73237 * 19 18 17 38 38 H 1.09008 * 110.02839 * 238.56750 * 20 16 6 39 39 H 1.09000 * 110.03158 * 359.94362 * 20 16 6 40 40 H 1.08995 * 109.47341 * 299.31907 * 21 5 4 41 41 H 1.09007 * 109.50402 * 179.27280 * 21 5 4 42 42 H 1.08998 * 109.48937 * 303.15482 * 22 2 1 43 43 H 1.08997 * 109.48873 * 63.20418 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3290 0.0804 5 7 4.0505 0.5656 -1.0595 6 6 5.5195 0.5656 -1.0589 7 1 5.8829 1.5908 -0.9876 8 6 6.0213 -0.2284 0.1195 9 1 5.3210 -0.7341 0.7677 10 6 7.3747 -0.3093 0.3703 11 7 8.1633 0.6945 0.0536 12 14 8.0883 -1.8444 1.1598 13 1 6.9995 -2.8210 1.4162 14 1 9.0910 -2.4500 0.2472 15 1 8.7419 -1.4828 2.4434 16 6 6.0299 -0.0673 -2.3550 17 6 7.5563 0.1241 -2.4711 18 6 7.7940 0.3736 -3.9811 19 6 6.5726 1.2379 -4.3812 20 6 5.4045 0.6409 -3.5694 21 6 3.5234 -0.8061 -1.0597 22 6 1.9956 -0.7632 -1.1401 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6013 1.9128 0.8602 27 1 1.6938 1.8777 -0.9171 28 1 3.9178 2.3448 0.0513 29 1 3.8254 0.8482 1.0108 30 1 9.1232 0.6111 0.1653 31 1 5.7835 -1.1289 -2.3741 32 1 7.8782 0.9860 -1.8867 33 1 8.0794 -0.7753 -2.1462 34 1 7.7987 -0.5669 -4.5321 35 1 8.7233 0.9194 -4.1438 36 1 6.3777 1.1514 -5.4501 37 1 6.7356 2.2797 -4.1052 38 1 4.8552 -0.0772 -4.1784 39 1 4.7366 1.4349 -3.2355 40 1 3.8253 -1.3116 -0.1424 41 1 3.9177 -1.3474 -1.9199 42 1 1.6012 -1.7789 -1.1110 43 1 1.6934 -0.2822 -2.0704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:24 Heat of formation + Delta-G solvation = 9.138322 kcal Electronic energy + Delta-G solvation = -20409.535125 eV Core-core repulsion = 17682.317089 eV Total energy + Delta-G solvation = -2727.218037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.88504 -37.24766 -34.60160 -32.57722 -30.32259 -29.43602 -27.49639 -26.91964 -25.46883 -23.38925 -22.84516 -21.14983 -19.69105 -19.08142 -18.24789 -16.36292 -15.54891 -14.74654 -14.67246 -14.46555 -14.39247 -14.26771 -13.69814 -13.37919 -12.91320 -12.44468 -12.26998 -12.01415 -11.78718 -11.55588 -11.37542 -11.06306 -10.67473 -10.62012 -10.50285 -10.35594 -10.22740 -10.10437 -10.00333 -9.88974 -9.70609 -9.45108 -9.14439 -8.98524 -8.09126 -7.98376 -7.01248 -6.15143 -3.96938 3.28264 3.40380 3.46588 4.31657 4.46664 5.04508 5.09230 5.35608 5.46151 5.59342 5.68054 5.68847 5.69616 5.72821 5.94346 5.94474 6.00744 6.03805 6.20075 6.30655 6.38887 6.41178 6.56794 6.60259 6.66697 6.69179 6.82321 6.85229 6.89100 6.94743 7.07187 7.16004 7.32509 7.38526 7.44853 7.49968 7.64274 7.88101 8.02607 8.16268 8.33025 8.44731 9.03138 9.58176 10.88710 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.008934 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.970558 B = 3133.280319 C = 4143.377682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.060 3.940 4 C 0.066 3.934 5 N -0.534 5.534 6 C 0.216 3.784 7 H 0.047 0.953 8 C -0.559 4.559 9 H 0.060 0.940 10 C 0.092 3.908 11 N -0.853 5.853 12 Si 0.852 3.148 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.288 1.288 16 C -0.066 4.066 17 C -0.111 4.111 18 C -0.133 4.133 19 C -0.121 4.121 20 C -0.112 4.112 21 C 0.062 3.938 22 C 0.058 3.942 23 H 0.019 0.981 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.261 0.739 31 H 0.045 0.955 32 H 0.116 0.884 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 0.321 -4.446 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.069 4.069 4 C -0.063 4.063 5 N -0.258 5.258 6 C 0.109 3.891 7 H 0.064 0.936 8 C -0.596 4.596 9 H 0.078 0.922 10 C -0.113 4.113 11 N -0.488 5.488 12 Si 0.679 3.321 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.214 1.214 16 C -0.086 4.086 17 C -0.149 4.149 18 C -0.171 4.171 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.066 4.066 22 C -0.070 4.070 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.148 0.430 -4.387 9.264 hybrid contribution 0.533 -1.095 0.359 1.270 sum -7.615 -0.665 -4.028 8.640 Atomic orbital electron populations 1.22313 0.88457 1.01364 1.00016 1.62131 1.06618 1.14590 1.43487 1.22216 0.96601 0.88446 0.99591 1.21884 0.91372 0.98557 0.94488 1.62615 1.11090 1.11957 1.40178 1.19387 0.80880 0.96933 0.91856 0.93555 1.21544 0.92132 1.33101 1.12834 0.92175 1.24652 0.97335 0.94791 0.94516 1.70113 1.04554 1.27439 1.46739 0.87198 0.79408 0.86377 0.79125 1.19724 1.20784 1.21447 1.21851 0.94637 0.97823 0.94279 1.22851 0.95658 1.03826 0.92553 1.22634 0.96888 0.98211 0.99356 1.22331 0.96387 0.99237 0.97940 1.22158 0.96812 0.99666 0.96347 1.21963 0.91093 0.92170 1.01416 1.22246 0.96838 0.96993 0.90940 0.96211 0.91936 0.91896 0.91511 0.94950 0.91473 0.93462 0.92937 0.93622 0.86655 0.94076 0.93543 0.93228 0.93701 0.92447 0.94270 0.91246 0.93308 0.91225 0.91634 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.60 60.06 0.58 0.92 16 2 N -0.54 -8.80 4.97 -242.76 -1.21 -10.00 16 3 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 4 C 0.07 1.29 5.36 -3.77 -0.02 1.27 16 5 N -0.53 -10.98 3.70 -227.87 -0.84 -11.82 16 6 C 0.22 5.04 1.29 -68.86 -0.09 4.95 16 7 H 0.05 1.22 7.80 -51.93 -0.41 0.82 16 8 C -0.56 -14.44 6.95 -34.44 -0.24 -14.68 16 9 H 0.06 1.63 5.98 -52.49 -0.31 1.32 16 10 C 0.09 2.40 3.85 -17.82 -0.07 2.33 16 11 N -0.85 -22.64 10.24 55.43 0.57 -22.08 16 12 Si 0.85 20.51 29.64 -169.99 -5.04 15.47 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 C -0.07 -1.44 1.99 -89.50 -0.18 -1.62 16 17 C -0.11 -2.46 4.41 -25.07 -0.11 -2.57 16 18 C -0.13 -2.48 6.91 -24.74 -0.17 -2.65 16 19 C -0.12 -2.13 6.83 -25.07 -0.17 -2.30 16 20 C -0.11 -2.13 6.14 -25.62 -0.16 -2.29 16 21 C 0.06 1.21 4.97 -3.76 -0.02 1.20 16 22 C 0.06 0.95 5.62 -3.76 -0.02 0.93 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 29 H 0.05 1.04 7.14 -51.93 -0.37 0.67 16 30 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 31 H 0.05 1.03 6.84 -51.93 -0.36 0.68 16 32 H 0.12 2.85 5.30 -51.93 -0.27 2.58 16 33 H 0.04 0.97 7.72 -51.93 -0.40 0.57 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.07 1.37 7.15 -51.93 -0.37 0.99 16 40 H 0.05 1.08 6.30 -51.93 -0.33 0.75 16 41 H 0.07 1.36 6.44 -51.92 -0.33 1.02 16 42 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -25.91 314.16 -10.26 -36.16 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.78 Total: 1.10 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.69 Total: -13.57 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -1.48 Total: -43.90 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.04 Total: 15.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.91 -10.26 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.302 kcal (2) G-P(sol) polarization free energy of solvation -25.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds