Wall clock time and date at job start Mon Mar 30 2020 04:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 111.00435 * 2 1 4 4 C 1.53043 * 109.36748 * 176.80877 * 3 2 1 5 5 N 1.46960 * 109.38027 * 58.39337 * 4 3 2 6 6 C 1.46904 * 111.00085 * 176.82258 * 5 4 3 7 7 H 1.09004 * 109.47067 * 307.77940 * 6 5 4 8 8 C 1.50696 * 109.46929 * 67.77840 * 6 5 4 9 9 H 1.08002 * 120.00696 * 3.49951 * 8 6 5 10 10 C 1.37881 * 119.99973 * 183.49639 * 8 6 5 11 11 N 1.31516 * 119.99642 * 31.31789 * 10 8 6 12 12 Si 1.86795 * 120.00473 * 211.31554 * 10 8 6 13 13 H 1.48499 * 109.47142 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47231 * 120.00027 * 12 10 8 15 15 H 1.48507 * 109.47227 * 240.00394 * 12 10 8 16 16 C 1.53000 * 109.46920 * 187.78126 * 6 5 4 17 17 C 1.54271 * 110.02896 * 171.13924 * 16 6 5 18 18 C 1.54883 * 104.19649 * 217.10243 * 17 16 6 19 19 C 1.54888 * 102.74835 * 37.94280 * 18 17 16 20 20 C 1.53872 * 110.03409 * 53.97709 * 16 6 5 21 21 C 1.46955 * 110.87832 * 300.70908 * 5 4 3 22 22 C 1.46957 * 110.99840 * 236.20105 * 2 1 3 23 23 H 1.09007 * 109.46986 * 59.99410 * 1 2 3 24 24 H 1.08997 * 109.47542 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47432 * 299.99989 * 1 2 3 26 26 H 1.09001 * 109.48538 * 56.84143 * 3 2 1 27 27 H 1.08996 * 109.50673 * 296.79407 * 3 2 1 28 28 H 1.09004 * 109.49089 * 178.36593 * 4 3 2 29 29 H 1.08999 * 109.49533 * 298.41628 * 4 3 2 30 30 H 0.97001 * 120.00204 * 184.80209 * 11 10 8 31 31 H 1.08993 * 110.01726 * 292.57752 * 16 6 5 32 32 H 1.08998 * 110.48673 * 335.78435 * 17 16 6 33 33 H 1.09001 * 110.48510 * 98.42946 * 17 16 6 34 34 H 1.09004 * 110.76085 * 279.63135 * 18 17 16 35 35 H 1.08996 * 110.91768 * 156.33147 * 18 17 16 36 36 H 1.08997 * 110.49041 * 203.37786 * 19 18 17 37 37 H 1.09004 * 110.48800 * 80.73237 * 19 18 17 38 38 H 1.09008 * 110.02839 * 238.56750 * 20 16 6 39 39 H 1.09000 * 110.03158 * 359.94362 * 20 16 6 40 40 H 1.08995 * 109.47341 * 299.31907 * 21 5 4 41 41 H 1.09007 * 109.50402 * 179.27280 * 21 5 4 42 42 H 1.08998 * 109.48937 * 303.15482 * 22 2 1 43 43 H 1.08997 * 109.48873 * 63.20418 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3290 0.0804 5 7 4.0505 0.5656 -1.0595 6 6 5.5195 0.5656 -1.0589 7 1 5.8829 1.5908 -0.9876 8 6 6.0213 -0.2284 0.1195 9 1 5.3210 -0.7341 0.7677 10 6 7.3747 -0.3093 0.3703 11 7 8.1633 0.6945 0.0536 12 14 8.0883 -1.8444 1.1598 13 1 6.9995 -2.8210 1.4162 14 1 9.0910 -2.4500 0.2472 15 1 8.7419 -1.4828 2.4434 16 6 6.0299 -0.0673 -2.3550 17 6 7.5563 0.1241 -2.4711 18 6 7.7940 0.3736 -3.9811 19 6 6.5726 1.2379 -4.3812 20 6 5.4045 0.6409 -3.5694 21 6 3.5234 -0.8061 -1.0597 22 6 1.9956 -0.7632 -1.1401 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6013 1.9128 0.8602 27 1 1.6938 1.8777 -0.9171 28 1 3.9178 2.3448 0.0513 29 1 3.8254 0.8482 1.0108 30 1 9.1232 0.6111 0.1653 31 1 5.7835 -1.1289 -2.3741 32 1 7.8782 0.9860 -1.8867 33 1 8.0794 -0.7753 -2.1462 34 1 7.7987 -0.5669 -4.5321 35 1 8.7233 0.9194 -4.1438 36 1 6.3777 1.1514 -5.4501 37 1 6.7356 2.2797 -4.1052 38 1 4.8552 -0.0772 -4.1784 39 1 4.7366 1.4349 -3.2355 40 1 3.8253 -1.3116 -0.1424 41 1 3.9177 -1.3474 -1.9199 42 1 1.6012 -1.7789 -1.1110 43 1 1.6934 -0.2822 -2.0704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:23 Heat of formation + Delta-G solvation = -6.169506 kcal Electronic energy + Delta-G solvation = -20410.198923 eV Core-core repulsion = 17682.317089 eV Total energy + Delta-G solvation = -2727.881834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45754 -38.76857 -36.13238 -34.51389 -31.79848 -31.03619 -29.12163 -28.31830 -27.33604 -24.83521 -24.31087 -22.81152 -21.23012 -20.64087 -19.99860 -18.27991 -17.09825 -16.50894 -16.16260 -16.06948 -15.82257 -15.65955 -15.25776 -14.97544 -14.60359 -14.04335 -13.85587 -13.35485 -13.24614 -13.13010 -13.00214 -12.76412 -12.45070 -12.25224 -12.14886 -12.00771 -11.76731 -11.73214 -11.64923 -11.56256 -11.31297 -11.11090 -10.92844 -10.74103 -10.08981 -9.23094 -8.83361 -8.16836 -6.04963 1.30913 1.39678 1.47953 2.44188 3.02158 3.09555 3.42263 4.07298 4.12413 4.14557 4.18647 4.25305 4.32136 4.53369 4.54918 4.69581 4.72563 4.76367 4.81337 4.89409 4.94308 4.97717 5.03556 5.04680 5.06443 5.17813 5.19507 5.21002 5.28888 5.32754 5.37362 5.50402 5.64301 5.70006 5.81350 5.92745 6.13415 6.14911 6.18562 6.33492 6.43692 6.67517 7.02356 7.50736 8.83275 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.008934 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.970558 B = 3133.280319 C = 4143.377682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.563 5.563 3 C 0.071 3.929 4 C 0.067 3.933 5 N -0.528 5.528 6 C 0.226 3.774 7 H 0.010 0.990 8 C -0.568 4.568 9 H 0.040 0.960 10 C 0.060 3.940 11 N -0.868 5.868 12 Si 0.899 3.101 13 H -0.278 1.278 14 H -0.277 1.277 15 H -0.288 1.288 16 C -0.064 4.064 17 C -0.110 4.110 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.104 4.104 21 C 0.067 3.933 22 C 0.067 3.933 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.014 0.986 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.017 0.983 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 0.061 -5.945 11.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.289 5.289 3 C -0.057 4.057 4 C -0.063 4.063 5 N -0.251 5.251 6 C 0.119 3.881 7 H 0.028 0.972 8 C -0.606 4.606 9 H 0.058 0.942 10 C -0.143 4.143 11 N -0.505 5.505 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.203 1.203 15 H -0.214 1.214 16 C -0.084 4.084 17 C -0.149 4.149 18 C -0.164 4.164 19 C -0.152 4.152 20 C -0.141 4.141 21 C -0.062 4.062 22 C -0.061 4.061 23 H 0.048 0.952 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.662 0.169 -5.884 11.314 hybrid contribution 0.995 -1.008 0.900 1.678 sum -8.667 -0.839 -4.984 10.033 Atomic orbital electron populations 1.22368 0.85760 1.02622 1.01090 1.62103 1.09072 1.14189 1.43492 1.22079 0.93624 0.89201 1.00822 1.21887 0.94249 0.97548 0.92568 1.62620 1.09377 1.12804 1.40342 1.19147 0.82655 0.94352 0.91989 0.97212 1.21665 0.92028 1.33312 1.13561 0.94158 1.25104 0.97666 0.96286 0.95273 1.70183 1.04654 1.28139 1.47498 0.86476 0.78605 0.83943 0.78468 1.20286 1.20279 1.21420 1.21740 0.94646 0.97207 0.94787 1.22677 0.95635 1.01399 0.95160 1.22576 0.98043 0.99373 0.96373 1.22297 0.94798 0.98622 0.99498 1.22048 0.97253 0.99495 0.95353 1.21931 0.93768 0.90887 0.99618 1.22135 0.94060 0.98401 0.91499 0.95186 0.90660 0.90684 0.89604 0.94177 0.92126 0.96775 0.92801 0.94756 0.89330 0.96448 0.92094 0.92148 0.90535 0.92700 0.92610 0.92038 0.96593 0.91402 0.89688 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.60 127.69 1.23 1.87 16 2 N -0.56 -17.15 4.97 -921.96 -4.58 -21.73 16 3 C 0.07 2.22 5.62 86.31 0.49 2.70 16 4 C 0.07 2.66 5.36 86.31 0.46 3.12 16 5 N -0.53 -22.07 3.70 -874.85 -3.24 -25.31 16 6 C 0.23 10.92 1.29 44.17 0.06 10.98 16 7 H 0.01 0.55 7.80 -2.38 -0.02 0.53 16 8 C -0.57 -30.64 6.95 25.60 0.18 -30.47 16 9 H 0.04 2.31 5.98 -2.91 -0.02 2.29 16 10 C 0.06 3.25 3.85 84.66 0.33 3.57 16 11 N -0.87 -47.60 10.24 21.45 0.22 -47.38 16 12 Si 0.90 43.19 29.64 68.60 2.03 45.22 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 16 C -0.06 -2.82 1.99 -10.07 -0.02 -2.84 16 17 C -0.11 -4.96 4.41 31.67 0.14 -4.82 16 18 C -0.13 -4.47 6.91 31.88 0.22 -4.25 16 19 C -0.11 -3.74 6.83 31.67 0.22 -3.53 16 20 C -0.10 -3.79 6.14 31.32 0.19 -3.60 16 21 C 0.07 2.61 4.97 86.31 0.43 3.04 16 22 C 0.07 2.09 5.62 86.31 0.49 2.57 16 23 H 0.03 0.61 8.14 -2.38 -0.02 0.60 16 24 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 2.45 8.09 -2.38 -0.02 2.43 16 29 H 0.01 0.65 7.14 -2.39 -0.02 0.63 16 30 H 0.26 13.75 8.32 -92.71 -0.77 12.98 16 31 H 0.03 1.56 6.84 -2.39 -0.02 1.55 16 32 H 0.09 4.51 5.30 -2.39 -0.01 4.50 16 33 H 0.02 0.82 7.72 -2.39 -0.02 0.80 16 34 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.06 2.35 7.15 -2.39 -0.02 2.33 16 40 H 0.02 0.72 6.30 -2.39 -0.02 0.71 16 41 H 0.07 2.64 6.44 -2.38 -0.02 2.62 16 42 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 43 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -57.30 314.16 -0.22 -57.52 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.95 Total: 13.31 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.40 Total: -21.64 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -7.60 Total: -94.42 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -57.30 -0.22 -57.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.350 kcal (2) G-P(sol) polarization free energy of solvation -57.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds