Wall clock time and date at job start Mon Mar 30 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46845 * 111.00094 * 2 1 4 4 C 1.53040 * 109.51491 * 185.83662 * 3 2 1 5 5 C 1.53125 * 109.27365 * 300.81891 * 4 3 2 6 6 C 1.53118 * 109.15944 * 57.65743 * 5 4 3 7 7 H 1.09000 * 109.50458 * 62.28455 * 6 5 4 8 8 C 1.53001 * 109.50386 * 182.36501 * 6 5 4 9 9 N 1.46904 * 109.46899 * 294.68620 * 8 6 5 10 10 C 1.47850 * 111.00001 * 285.29190 * 9 8 6 11 11 C 1.54898 * 104.79694 * 213.63715 * 10 9 8 12 12 C 1.55134 * 101.65520 * 37.07264 * 11 10 9 13 13 H 1.09000 * 110.85909 * 82.79455 * 12 11 10 14 14 C 1.50706 * 110.70925 * 205.96502 * 12 11 10 15 15 H 1.08001 * 120.00285 * 113.59238 * 14 12 11 16 16 C 1.37874 * 119.99719 * 293.59533 * 14 12 11 17 17 N 1.31512 * 119.99910 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 119.99995 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47286 * 89.99921 * 18 16 14 20 20 H 1.48501 * 109.46823 * 209.99771 * 18 16 14 21 21 H 1.48500 * 109.46933 * 329.99949 * 18 16 14 22 22 C 1.47436 * 111.00060 * 164.45424 * 9 8 6 23 23 C 1.46830 * 110.98364 * 124.21002 * 2 1 3 24 24 H 1.08999 * 109.46927 * 56.04948 * 1 2 3 25 25 H 1.09000 * 109.47274 * 176.05059 * 1 2 3 26 26 H 1.09000 * 109.47336 * 296.05576 * 1 2 3 27 27 H 1.08992 * 109.46665 * 65.82178 * 3 2 1 28 28 H 1.09006 * 109.46089 * 305.84098 * 3 2 1 29 29 H 1.08999 * 109.50889 * 60.75876 * 4 3 2 30 30 H 1.08998 * 109.50238 * 180.88363 * 4 3 2 31 31 H 1.09006 * 109.51991 * 177.56052 * 5 4 3 32 32 H 1.09002 * 109.52390 * 297.68749 * 5 4 3 33 33 H 1.08994 * 109.47388 * 54.68078 * 8 6 5 34 34 H 1.08994 * 109.47313 * 174.68849 * 8 6 5 35 35 H 1.09002 * 110.37112 * 332.47430 * 10 9 8 36 36 H 1.09001 * 110.37032 * 94.80642 * 10 9 8 37 37 H 1.09001 * 110.99066 * 278.97648 * 11 10 9 38 38 H 1.09007 * 110.99114 * 155.16078 * 11 10 9 39 39 H 0.97006 * 120.00093 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.88839 * 242.66010 * 22 9 8 41 41 H 1.09003 * 109.89092 * 3.68192 * 22 9 8 42 42 H 1.09000 * 109.46377 * 54.13924 * 23 2 1 43 43 H 1.09001 * 109.45451 * 294.16632 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3339 -0.1467 5 6 4.1185 0.5366 1.0146 6 6 3.5176 -0.8717 1.0210 7 1 3.7808 -1.3839 0.0956 8 6 4.0680 -1.6565 2.2136 9 7 5.5129 -1.8587 2.0419 10 6 5.7855 -2.8933 1.0215 11 6 7.0721 -3.6030 1.5117 12 6 6.8577 -3.6144 3.0481 13 1 6.2262 -4.4515 3.3457 14 6 8.1796 -3.6634 3.7703 15 1 8.5002 -2.8226 4.3676 16 6 8.9797 -4.7816 3.6684 17 7 10.1334 -4.8242 4.2981 18 14 8.4255 -6.2355 2.6346 19 1 8.9113 -6.0662 1.2416 20 1 8.9826 -7.4887 3.2042 21 1 6.9423 -6.3074 2.6364 22 6 6.1428 -2.2719 3.3092 23 6 1.9948 -0.7708 1.1337 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3634 -1.0252 -0.0708 26 1 -0.3634 0.4514 0.9232 27 1 1.7325 1.8608 0.9375 28 1 1.5635 1.9256 -0.8332 29 1 3.7814 0.8564 -1.0905 30 1 3.9100 2.3509 -0.1309 31 1 5.1995 0.4709 0.8908 32 1 3.8894 1.0358 1.9561 33 1 3.8859 -1.0977 3.1315 34 1 3.5702 -2.6243 2.2726 35 1 4.9583 -3.6011 0.9682 36 1 5.9541 -2.4315 0.0486 37 1 7.9600 -3.0296 1.2455 38 1 7.1322 -4.6179 1.1184 39 1 10.6965 -5.6108 4.2262 40 1 6.8673 -1.5213 3.6252 41 1 5.3808 -2.3982 4.0783 42 1 1.5627 -1.7714 1.1242 43 1 1.7319 -0.2706 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:32 Heat of formation + Delta-G solvation = -2.937474 kcal Electronic energy + Delta-G solvation = -19339.462545 eV Core-core repulsion = 16611.720862 eV Total energy + Delta-G solvation = -2727.741682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.41693 -37.99489 -34.33496 -32.79512 -31.82311 -29.93963 -28.45823 -26.81433 -25.60408 -23.66473 -22.88503 -21.64512 -20.30524 -19.52082 -19.30504 -16.90554 -15.88668 -15.64186 -15.00743 -14.84279 -14.58037 -14.27428 -14.02532 -13.56705 -13.13107 -12.94920 -12.59691 -12.50272 -12.43897 -12.27046 -11.85318 -11.72806 -11.44927 -11.13496 -10.95487 -10.71813 -10.57963 -10.42563 -10.27491 -10.13378 -9.99160 -9.80128 -9.44147 -9.04566 -8.54346 -8.48511 -7.70186 -6.06807 -4.05524 3.28603 3.37171 3.38426 3.74773 4.42207 4.49010 4.77520 4.85411 4.92246 5.07538 5.22051 5.24832 5.25798 5.36660 5.43031 5.49857 5.59926 5.63369 5.64182 5.69691 5.73465 5.85804 5.89800 5.97871 6.01886 6.10348 6.16624 6.20608 6.30248 6.52069 6.52945 6.63102 6.78985 6.86229 6.92878 6.94287 7.08643 7.33532 7.65312 7.72717 7.78298 8.52880 8.96900 9.55849 11.06429 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.045928 B = 0.004387 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.510112 B = 6381.064689 C = 6576.495946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.077 4.077 7 H 0.078 0.922 8 C 0.057 3.943 9 N -0.528 5.528 10 C 0.044 3.956 11 C -0.134 4.134 12 C -0.003 4.003 13 H 0.030 0.970 14 C -0.506 4.506 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.267 1.267 22 C 0.059 3.941 23 C 0.061 3.939 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.446 9.586 -8.561 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.144 4.144 6 C -0.096 4.096 7 H 0.096 0.904 8 C -0.073 4.073 9 N -0.252 5.252 10 C -0.084 4.084 11 C -0.172 4.172 12 C -0.023 4.023 13 H 0.048 0.952 14 C -0.544 4.544 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.192 1.192 22 C -0.068 4.068 23 C -0.067 4.067 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.929 9.736 -9.101 21.546 hybrid contribution -0.892 -1.289 0.483 1.640 sum -17.821 8.447 -8.618 21.522 Atomic orbital electron populations 1.22342 0.87594 1.02126 1.00215 1.61878 1.07210 1.13929 1.43785 1.22112 0.96262 0.88861 0.99964 1.21626 0.93789 1.00196 1.00024 1.21503 1.01499 0.94157 0.97211 1.21124 0.92406 0.96784 0.99274 0.90404 1.22275 0.89317 0.98124 0.97544 1.63545 1.09325 1.43921 1.08383 1.23045 0.97607 0.92194 0.95552 1.23091 0.96638 0.98399 0.99061 1.20338 0.96991 0.93185 0.91785 0.95190 1.20959 1.00772 1.03098 1.29552 0.90672 1.24984 0.94670 0.98163 0.95222 1.69901 1.11228 1.29681 1.43193 0.86895 0.79286 0.82243 0.80725 1.20236 1.22011 1.19225 1.22822 0.96878 0.98290 0.88827 1.22122 0.95825 0.97803 0.90998 0.91543 0.91441 0.95897 0.95170 0.91213 0.91273 0.91756 0.90114 0.92877 0.91533 0.95120 0.94801 0.91519 0.90622 0.93225 0.92687 0.90569 0.94502 0.91067 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.59 60.06 0.58 0.80 16 2 N -0.54 -5.91 4.91 -242.98 -1.19 -7.10 16 3 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 4 C -0.12 -1.25 6.09 -26.65 -0.16 -1.41 16 5 C -0.11 -1.30 5.15 -26.61 -0.14 -1.44 16 6 C -0.08 -0.98 2.40 -90.54 -0.22 -1.20 16 7 H 0.08 1.09 7.57 -51.93 -0.39 0.70 16 8 C 0.06 0.83 4.07 -3.82 -0.02 0.81 16 9 N -0.53 -9.30 4.64 -231.25 -1.07 -10.37 16 10 C 0.04 0.78 5.99 -2.30 -0.01 0.77 16 11 C -0.13 -2.87 5.44 -24.60 -0.13 -3.00 16 12 C 0.00 -0.08 2.32 -89.95 -0.21 -0.29 16 13 H 0.03 0.73 7.03 -51.93 -0.37 0.36 16 14 C -0.51 -14.16 9.05 -34.44 -0.31 -14.47 16 15 H 0.08 2.27 7.78 -52.49 -0.41 1.86 16 16 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 17 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 18 Si 0.88 21.81 24.80 -169.99 -4.22 17.60 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.27 -6.38 6.46 56.52 0.37 -6.02 16 22 C 0.06 1.19 6.43 -2.84 -0.02 1.18 16 23 C 0.06 0.69 4.75 -3.84 -0.02 0.67 16 24 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.12 7.84 -51.93 -0.41 0.72 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 34 H 0.03 0.46 7.69 -51.93 -0.40 0.06 16 35 H 0.03 0.58 7.53 -51.93 -0.39 0.19 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.70 8.04 -51.93 -0.42 1.28 16 38 H 0.05 1.07 5.59 -51.93 -0.29 0.78 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 1.64 7.63 -51.93 -0.40 1.24 16 41 H 0.04 0.70 7.47 -51.93 -0.39 0.31 16 42 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -29.36 320.96 -9.73 -39.10 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -8.08 Total: -2.11 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.78 Total: -15.09 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -1.49 Total: -44.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.22 Total: 17.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.36 -9.73 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.158 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds