Wall clock time and date at job start Mon Mar 30 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46845 * 111.00094 * 2 1 4 4 C 1.53040 * 109.51491 * 185.83662 * 3 2 1 5 5 C 1.53125 * 109.27365 * 300.81891 * 4 3 2 6 6 C 1.53118 * 109.15944 * 57.65743 * 5 4 3 7 7 H 1.09000 * 109.50458 * 62.28455 * 6 5 4 8 8 C 1.53001 * 109.50386 * 182.36501 * 6 5 4 9 9 N 1.46904 * 109.46899 * 294.68620 * 8 6 5 10 10 C 1.47850 * 111.00001 * 285.29190 * 9 8 6 11 11 C 1.54898 * 104.79694 * 213.63715 * 10 9 8 12 12 C 1.55134 * 101.65520 * 37.07264 * 11 10 9 13 13 H 1.09000 * 110.85909 * 82.79455 * 12 11 10 14 14 C 1.50706 * 110.70925 * 205.96502 * 12 11 10 15 15 H 1.08001 * 120.00285 * 113.59238 * 14 12 11 16 16 C 1.37874 * 119.99719 * 293.59533 * 14 12 11 17 17 N 1.31512 * 119.99910 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 119.99995 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47286 * 89.99921 * 18 16 14 20 20 H 1.48501 * 109.46823 * 209.99771 * 18 16 14 21 21 H 1.48500 * 109.46933 * 329.99949 * 18 16 14 22 22 C 1.47436 * 111.00060 * 164.45424 * 9 8 6 23 23 C 1.46830 * 110.98364 * 124.21002 * 2 1 3 24 24 H 1.08999 * 109.46927 * 56.04948 * 1 2 3 25 25 H 1.09000 * 109.47274 * 176.05059 * 1 2 3 26 26 H 1.09000 * 109.47336 * 296.05576 * 1 2 3 27 27 H 1.08992 * 109.46665 * 65.82178 * 3 2 1 28 28 H 1.09006 * 109.46089 * 305.84098 * 3 2 1 29 29 H 1.08999 * 109.50889 * 60.75876 * 4 3 2 30 30 H 1.08998 * 109.50238 * 180.88363 * 4 3 2 31 31 H 1.09006 * 109.51991 * 177.56052 * 5 4 3 32 32 H 1.09002 * 109.52390 * 297.68749 * 5 4 3 33 33 H 1.08994 * 109.47388 * 54.68078 * 8 6 5 34 34 H 1.08994 * 109.47313 * 174.68849 * 8 6 5 35 35 H 1.09002 * 110.37112 * 332.47430 * 10 9 8 36 36 H 1.09001 * 110.37032 * 94.80642 * 10 9 8 37 37 H 1.09001 * 110.99066 * 278.97648 * 11 10 9 38 38 H 1.09007 * 110.99114 * 155.16078 * 11 10 9 39 39 H 0.97006 * 120.00093 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.88839 * 242.66010 * 22 9 8 41 41 H 1.09003 * 109.89092 * 3.68192 * 22 9 8 42 42 H 1.09000 * 109.46377 * 54.13924 * 23 2 1 43 43 H 1.09001 * 109.45451 * 294.16632 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3339 -0.1467 5 6 4.1185 0.5366 1.0146 6 6 3.5176 -0.8717 1.0210 7 1 3.7808 -1.3839 0.0956 8 6 4.0680 -1.6565 2.2136 9 7 5.5129 -1.8587 2.0419 10 6 5.7855 -2.8933 1.0215 11 6 7.0721 -3.6030 1.5117 12 6 6.8577 -3.6144 3.0481 13 1 6.2262 -4.4515 3.3457 14 6 8.1796 -3.6634 3.7703 15 1 8.5002 -2.8226 4.3676 16 6 8.9797 -4.7816 3.6684 17 7 10.1334 -4.8242 4.2981 18 14 8.4255 -6.2355 2.6346 19 1 8.9113 -6.0662 1.2416 20 1 8.9826 -7.4887 3.2042 21 1 6.9423 -6.3074 2.6364 22 6 6.1428 -2.2719 3.3092 23 6 1.9948 -0.7708 1.1337 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3634 -1.0252 -0.0708 26 1 -0.3634 0.4514 0.9232 27 1 1.7325 1.8608 0.9375 28 1 1.5635 1.9256 -0.8332 29 1 3.7814 0.8564 -1.0905 30 1 3.9100 2.3509 -0.1309 31 1 5.1995 0.4709 0.8908 32 1 3.8894 1.0358 1.9561 33 1 3.8859 -1.0977 3.1315 34 1 3.5702 -2.6243 2.2726 35 1 4.9583 -3.6011 0.9682 36 1 5.9541 -2.4315 0.0486 37 1 7.9600 -3.0296 1.2455 38 1 7.1322 -4.6179 1.1184 39 1 10.6965 -5.6108 4.2262 40 1 6.8673 -1.5213 3.6252 41 1 5.3808 -2.3982 4.0783 42 1 1.5627 -1.7714 1.1242 43 1 1.7319 -0.2706 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:32 Heat of formation + Delta-G solvation = -22.834172 kcal Electronic energy + Delta-G solvation = -19340.325330 eV Core-core repulsion = 16611.720862 eV Total energy + Delta-G solvation = -2728.604468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.50449 -39.31849 -35.64944 -34.45217 -33.09419 -31.36888 -30.11709 -27.61233 -27.03889 -25.34082 -23.72789 -22.82096 -21.67234 -21.14849 -20.41818 -19.00445 -17.07027 -16.78499 -16.40149 -15.99885 -15.74856 -15.48963 -15.20108 -14.87483 -14.74140 -14.23706 -14.10682 -13.84726 -13.62360 -13.21034 -13.12537 -12.90971 -12.73604 -12.67023 -12.41261 -12.07541 -11.89852 -11.87912 -11.61654 -11.49777 -11.36011 -11.15803 -11.12061 -11.05665 -10.71903 -9.26503 -9.13206 -8.29954 -6.33589 1.32127 1.34454 1.44710 2.33211 2.89015 3.04774 3.23298 3.83450 3.93871 3.95632 4.06762 4.13890 4.25113 4.33237 4.42323 4.48448 4.51137 4.56476 4.63538 4.65210 4.68201 4.72800 4.78137 4.85944 4.88710 4.94937 5.02680 5.03604 5.07233 5.16524 5.21967 5.28370 5.34053 5.49193 5.51994 5.56426 5.71555 6.11782 6.12504 6.18475 6.27829 6.35967 6.72207 7.31404 8.86979 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.045928 B = 0.004387 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.510112 B = 6381.064689 C = 6576.495946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.057 3.943 4 C -0.114 4.114 5 C -0.104 4.104 6 C -0.068 4.068 7 H 0.069 0.931 8 C 0.058 3.942 9 N -0.530 5.530 10 C 0.054 3.946 11 C -0.133 4.133 12 C -0.009 4.009 13 H 0.030 0.970 14 C -0.512 4.512 15 H 0.033 0.967 16 C 0.013 3.987 17 N -0.951 5.951 18 Si 0.944 3.056 19 H -0.263 1.263 20 H -0.293 1.293 21 H -0.248 1.248 22 C 0.068 3.932 23 C 0.066 3.934 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.266 0.734 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.119 9.482 -10.376 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.071 4.071 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.088 4.088 7 H 0.087 0.913 8 C -0.071 4.071 9 N -0.254 5.254 10 C -0.074 4.074 11 C -0.171 4.171 12 C -0.028 4.028 13 H 0.048 0.952 14 C -0.550 4.550 15 H 0.052 0.948 16 C -0.184 4.184 17 N -0.591 5.591 18 Si 0.769 3.231 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.172 1.172 22 C -0.060 4.060 23 C -0.063 4.063 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.633 9.652 -10.928 24.454 hybrid contribution -0.041 -1.160 1.111 1.606 sum -19.673 8.493 -9.817 23.570 Atomic orbital electron populations 1.22390 0.86214 1.02728 1.00918 1.61886 1.08550 1.14283 1.43429 1.22131 0.95638 0.88716 1.00624 1.21587 0.94391 1.00462 0.98757 1.21452 1.00336 0.94368 0.98013 1.21018 0.93570 0.96443 0.97737 0.91293 1.22346 0.87225 0.98764 0.98775 1.63516 1.11421 1.43598 1.06848 1.23002 0.96030 0.92257 0.96079 1.22966 0.97955 0.98907 0.97268 1.20300 0.94726 0.94864 0.92935 0.95233 1.21237 1.02845 1.01757 1.29143 0.94839 1.25864 0.94579 1.01375 0.96599 1.70053 1.12865 1.30868 1.45359 0.85859 0.79888 0.78082 0.79279 1.18850 1.21974 1.17189 1.22584 0.96771 0.95981 0.90643 1.22024 0.94523 0.98307 0.91414 0.90397 0.91022 0.95537 0.95068 0.89794 0.91871 0.90571 0.92076 0.92982 0.91120 0.94631 0.93225 0.89694 0.92405 0.92825 0.92546 0.92738 0.93245 0.90652 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.59 127.69 1.22 1.59 16 2 N -0.56 -10.55 4.91 -922.65 -4.53 -15.08 16 3 C 0.06 0.98 5.46 86.33 0.47 1.45 16 4 C -0.11 -2.16 6.09 30.65 0.19 -1.97 16 5 C -0.10 -2.38 5.15 30.68 0.16 -2.23 16 6 C -0.07 -1.59 2.40 -10.74 -0.03 -1.62 16 7 H 0.07 1.76 7.57 -2.39 -0.02 1.74 16 8 C 0.06 1.55 4.07 86.30 0.35 1.91 16 9 N -0.53 -17.85 4.64 -885.55 -4.11 -21.96 16 10 C 0.05 1.79 5.99 86.77 0.52 2.31 16 11 C -0.13 -5.50 5.44 31.97 0.17 -5.33 16 12 C -0.01 -0.40 2.32 -10.36 -0.02 -0.42 16 13 H 0.03 1.39 7.03 -2.39 -0.02 1.37 16 14 C -0.51 -29.49 9.05 25.60 0.23 -29.26 16 15 H 0.03 2.14 7.78 -2.91 -0.02 2.12 16 16 C 0.01 0.75 5.46 84.65 0.46 1.21 16 17 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 18 Si 0.94 44.69 24.80 68.60 1.70 46.39 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.25 -10.89 6.46 99.48 0.64 -10.25 16 22 C 0.07 2.73 6.43 86.65 0.56 3.29 16 23 C 0.07 1.32 4.75 86.33 0.41 1.73 16 24 H 0.08 0.94 8.10 -2.39 -0.02 0.93 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.64 7.84 -2.38 -0.02 1.62 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.86 7.86 -2.39 -0.02 1.84 16 34 H 0.04 0.95 7.69 -2.39 -0.02 0.93 16 35 H 0.05 1.52 7.53 -2.39 -0.02 1.50 16 36 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 38 H 0.05 2.17 5.59 -2.38 -0.01 2.15 16 39 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 40 H 0.05 2.41 7.63 -2.39 -0.02 2.39 16 41 H 0.05 1.84 7.47 -2.39 -0.02 1.82 16 42 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 43 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -63.97 320.96 -1.07 -65.04 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.87 Total: 12.70 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 4.70 Total: -27.34 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -8.34 Total: -96.79 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.70 Total: 46.39 kcal Total: -63.97 -1.07 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.208 kcal (2) G-P(sol) polarization free energy of solvation -63.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds