Wall clock time and date at job start Mon Mar 30 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46853 * 110.99361 * 2 1 4 4 C 1.53037 * 109.51922 * 174.15978 * 3 2 1 5 5 C 1.53121 * 109.27962 * 59.17934 * 4 3 2 6 6 C 1.53117 * 109.15936 * 302.34404 * 5 4 3 7 7 H 1.08996 * 109.53607 * 297.69351 * 6 5 4 8 8 C 1.52997 * 109.50356 * 177.59455 * 6 5 4 9 9 N 1.46900 * 109.47463 * 175.19668 * 8 6 5 10 10 C 1.47843 * 110.99888 * 290.84466 * 9 8 6 11 11 C 1.54904 * 104.79405 * 213.63369 * 10 9 8 12 12 C 1.55139 * 101.65629 * 37.06983 * 11 10 9 13 13 H 1.09003 * 110.70684 * 82.72539 * 12 11 10 14 14 C 1.50703 * 110.85665 * 205.89368 * 12 11 10 15 15 H 1.08001 * 119.99957 * 113.68546 * 14 12 11 16 16 C 1.37878 * 120.00042 * 293.68310 * 14 12 11 17 17 N 1.31512 * 119.99693 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 119.99832 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47388 * 60.00196 * 18 16 14 20 20 H 1.48501 * 109.47040 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47045 * 299.99872 * 18 16 14 22 22 C 1.47446 * 111.00255 * 170.00015 * 9 8 6 23 23 C 1.46844 * 111.00122 * 235.79091 * 2 1 3 24 24 H 1.09001 * 109.46615 * 184.20792 * 1 2 3 25 25 H 1.08999 * 109.47410 * 304.20544 * 1 2 3 26 26 H 1.08995 * 109.47043 * 64.21212 * 1 2 3 27 27 H 1.08998 * 109.45956 * 294.17181 * 3 2 1 28 28 H 1.08993 * 109.46355 * 54.14669 * 3 2 1 29 29 H 1.08999 * 109.50240 * 179.11625 * 4 3 2 30 30 H 1.08998 * 109.50542 * 299.19738 * 4 3 2 31 31 H 1.09001 * 109.52494 * 182.43961 * 5 4 3 32 32 H 1.09002 * 109.52014 * 62.24903 * 5 4 3 33 33 H 1.08998 * 109.47085 * 55.19530 * 8 6 5 34 34 H 1.09000 * 109.47513 * 295.19474 * 8 6 5 35 35 H 1.08998 * 110.37465 * 332.46027 * 10 9 8 36 36 H 1.09003 * 110.37404 * 94.80784 * 10 9 8 37 37 H 1.09005 * 110.99350 * 278.97811 * 11 10 9 38 38 H 1.08998 * 110.99317 * 155.16278 * 11 10 9 39 39 H 0.97002 * 119.99955 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.88511 * 242.66682 * 22 9 8 41 41 H 1.08994 * 109.88544 * 3.85008 * 22 9 8 42 42 H 1.08995 * 109.46163 * 65.82169 * 23 2 1 43 43 H 1.08997 * 109.46078 * 305.85100 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3344 0.1468 5 6 4.1188 0.5372 -1.0143 6 6 3.5182 -0.8713 -1.0208 7 1 3.7814 -1.3840 -0.0956 8 6 4.0682 -1.6556 -2.2137 9 7 3.5822 -3.0407 -2.1552 10 6 4.1960 -3.7702 -1.0253 11 6 4.3425 -5.2279 -1.5284 12 6 4.7149 -5.0093 -3.0185 13 1 5.7821 -4.8139 -3.1244 14 6 4.3070 -6.1958 -3.8532 15 1 3.5314 -6.0914 -4.5975 16 6 4.9240 -7.4147 -3.6668 17 7 5.8681 -7.5419 -2.7602 18 14 4.4188 -8.8852 -4.7020 19 1 4.6489 -8.5825 -6.1375 20 1 5.2266 -10.0678 -4.3093 21 1 2.9791 -9.1745 -4.4816 22 6 3.8912 -3.7624 -3.4033 23 6 1.9953 -0.7707 -1.1337 24 1 -0.3632 -1.0249 0.0754 25 1 -0.3634 0.5777 0.8499 26 1 -0.3633 0.4471 -0.9253 27 1 1.7324 1.8608 -0.9376 28 1 1.5633 1.9258 0.8329 29 1 3.9098 2.3514 0.1310 30 1 3.7813 0.8576 1.0909 31 1 5.1998 0.4716 -0.8905 32 1 3.8887 1.0357 -1.9560 33 1 5.1576 -1.6511 -2.1804 34 1 3.7311 -1.1913 -3.1405 35 1 5.1737 -3.3504 -0.7888 36 1 3.5451 -3.7340 -0.1517 37 1 3.4008 -5.7692 -1.4368 38 1 5.1418 -5.7456 -0.9982 39 1 6.3020 -8.3994 -2.6287 40 1 2.9668 -4.0657 -3.8947 41 1 4.4738 -3.1232 -4.0666 42 1 1.7325 -0.2708 -2.0659 43 1 1.5635 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:35 Heat of formation + Delta-G solvation = -9.074910 kcal Electronic energy + Delta-G solvation = -19344.482126 eV Core-core repulsion = 16616.474305 eV Total energy + Delta-G solvation = -2728.007822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.30886 -37.72178 -34.21249 -32.90539 -31.62854 -29.29827 -28.19642 -26.77222 -25.34609 -23.85861 -22.73808 -21.49467 -20.07529 -19.45903 -19.19662 -16.48527 -15.76026 -15.29159 -15.11486 -14.58035 -14.51731 -14.42673 -13.89402 -13.36333 -12.93186 -12.86182 -12.47442 -12.35919 -12.19220 -11.94415 -11.65506 -11.41383 -11.13767 -10.99905 -10.93270 -10.71428 -10.60004 -10.36324 -10.31039 -10.20567 -9.99574 -9.59140 -9.22218 -8.84036 -8.36384 -8.30599 -7.52947 -6.00192 -4.02644 3.33648 3.38111 3.40862 3.94815 4.44724 4.58335 4.83767 4.88694 5.08012 5.10471 5.31089 5.33289 5.39263 5.48376 5.51381 5.63565 5.70484 5.79113 5.82204 5.85598 5.91803 5.97421 6.03506 6.05741 6.14372 6.22629 6.27930 6.41177 6.44046 6.56307 6.66892 6.91348 7.10871 7.13951 7.19610 7.24470 7.63103 7.66347 7.88161 7.93680 8.03163 8.44547 8.99015 9.61143 11.09935 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.004264 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.123849 B = 6565.164206 C = 6798.349818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.077 4.077 7 H 0.079 0.921 8 C 0.057 3.943 9 N -0.531 5.531 10 C 0.039 3.961 11 C -0.105 4.105 12 C 0.035 3.965 13 H 0.029 0.971 14 C -0.511 4.511 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.047 3.953 23 C 0.071 3.929 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.021 0.979 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.031 0.969 42 H 0.026 0.974 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 16.283 5.306 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.097 4.097 7 H 0.097 0.903 8 C -0.072 4.072 9 N -0.255 5.255 10 C -0.088 4.088 11 C -0.144 4.144 12 C 0.016 3.984 13 H 0.047 0.953 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.080 4.080 23 C -0.056 4.056 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.111 15.951 5.871 18.062 hybrid contribution 0.404 -0.450 -1.416 1.539 sum -5.707 15.501 4.455 17.109 Atomic orbital electron populations 1.22317 0.87571 1.02352 0.99875 1.61926 1.07323 1.13230 1.44585 1.22076 0.95728 0.89595 0.99866 1.21557 0.94425 0.99769 0.99526 1.21634 0.99955 0.95791 0.98198 1.21151 0.94455 0.94653 0.99395 0.90310 1.22265 0.96871 0.90584 0.97474 1.63588 1.56700 1.00779 1.04455 1.23122 0.95782 0.96318 0.93619 1.22627 1.00922 0.92015 0.98800 1.19798 0.94742 0.91588 0.92315 0.95305 1.21048 1.20285 0.94031 1.19550 0.92560 1.24975 0.94869 0.98767 0.95288 1.69952 1.24898 1.24798 1.33281 0.86674 0.78610 0.82117 0.80684 1.20327 1.21369 1.20231 1.22981 0.99515 0.95596 0.89865 1.22050 0.95087 0.98635 0.89838 0.91162 0.91828 0.96019 0.95334 0.91278 0.91855 0.91141 0.91885 0.92430 0.95035 0.91834 0.95096 0.92073 0.92563 0.91402 0.93028 0.91411 0.95060 0.95580 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.59 60.07 0.58 0.86 16 2 N -0.55 -6.75 4.91 -242.96 -1.19 -7.95 16 3 C 0.06 0.59 5.46 -3.83 -0.02 0.56 16 4 C -0.11 -1.17 6.09 -26.65 -0.16 -1.33 16 5 C -0.12 -1.34 5.29 -26.61 -0.14 -1.48 16 6 C -0.08 -1.06 2.35 -90.54 -0.21 -1.27 16 7 H 0.08 1.19 7.34 -51.93 -0.38 0.81 16 8 C 0.06 0.91 3.96 -3.83 -0.02 0.89 16 9 N -0.53 -10.02 4.63 -231.26 -1.07 -11.09 16 10 C 0.04 0.77 5.72 -2.30 -0.01 0.75 16 11 C -0.10 -2.48 5.95 -24.60 -0.15 -2.62 16 12 C 0.03 0.88 2.77 -89.95 -0.25 0.63 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.51 -14.09 8.48 -34.44 -0.29 -14.39 16 15 H 0.06 1.53 7.53 -52.49 -0.40 1.13 16 16 C 0.06 1.75 5.36 -17.82 -0.10 1.65 16 17 N -0.89 -25.74 12.49 55.43 0.69 -25.05 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.05 1.02 6.45 -2.84 -0.02 1.00 16 23 C 0.07 0.97 4.62 -3.83 -0.02 0.96 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.03 0.51 7.85 -51.93 -0.41 0.11 16 34 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 35 H 0.03 0.59 7.62 -51.93 -0.40 0.20 16 36 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 37 H 0.06 1.38 8.05 -51.93 -0.42 0.97 16 38 H 0.07 1.71 7.76 -51.93 -0.40 1.31 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.07 1.49 7.63 -51.93 -0.40 1.10 16 41 H 0.03 0.63 7.55 -51.93 -0.39 0.24 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 1.40 7.76 -51.93 -0.40 0.99 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -28.13 327.99 -10.67 -38.80 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -8.21 Total: -2.23 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.81 Total: -13.80 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -1.57 Total: -44.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.13 -10.67 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.727 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds