Wall clock time and date at job start Mon Mar 30 2020 04:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46839 * 111.00234 * 2 1 4 4 C 1.53040 * 109.52859 * 185.83473 * 3 2 1 5 5 C 1.53128 * 109.30803 * 300.84508 * 4 3 2 6 6 C 1.53114 * 109.16134 * 57.59066 * 5 4 3 7 7 H 1.08994 * 109.50417 * 62.36317 * 6 5 4 8 8 C 1.53001 * 109.50358 * 182.44605 * 6 5 4 9 9 N 1.46898 * 109.46871 * 294.52396 * 8 6 5 10 10 C 1.47451 * 111.00015 * 284.39737 * 9 8 6 11 11 C 1.54314 * 107.36868 * 236.66318 * 10 9 8 12 12 C 1.55394 * 102.90062 * 337.89225 * 11 10 9 13 13 H 1.08998 * 110.90212 * 277.37685 * 12 11 10 14 14 C 1.50701 * 111.02597 * 153.63901 * 12 11 10 15 15 H 1.08004 * 119.99969 * 247.60376 * 14 12 11 16 16 C 1.37881 * 120.00360 * 67.60203 * 14 12 11 17 17 N 1.31513 * 119.99646 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99934 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47004 * 90.00582 * 18 16 14 20 20 H 1.48495 * 109.46926 * 209.99836 * 18 16 14 21 21 H 1.48491 * 109.47446 * 330.00202 * 18 16 14 22 22 C 1.47836 * 111.00034 * 163.55553 * 9 8 6 23 23 C 1.46857 * 110.99699 * 124.20729 * 2 1 3 24 24 H 1.08998 * 109.47624 * 295.79311 * 1 2 3 25 25 H 1.08999 * 109.46694 * 55.79543 * 1 2 3 26 26 H 1.08999 * 109.47305 * 175.78890 * 1 2 3 27 27 H 1.08997 * 109.46481 * 305.85150 * 3 2 1 28 28 H 1.09009 * 109.46440 * 65.82079 * 3 2 1 29 29 H 1.08995 * 109.49899 * 60.75905 * 4 3 2 30 30 H 1.08990 * 109.50692 * 180.83641 * 4 3 2 31 31 H 1.09004 * 109.48699 * 297.70194 * 5 4 3 32 32 H 1.08997 * 109.55040 * 177.51707 * 5 4 3 33 33 H 1.09002 * 109.47264 * 174.52423 * 8 6 5 34 34 H 1.08996 * 109.47158 * 54.51758 * 8 6 5 35 35 H 1.09001 * 109.88436 * 356.14402 * 10 9 8 36 36 H 1.08998 * 109.89002 * 117.17139 * 10 9 8 37 37 H 1.09004 * 110.70765 * 96.17595 * 11 10 9 38 38 H 1.09001 * 110.70650 * 219.40859 * 11 10 9 39 39 H 0.96996 * 119.99932 * 179.97438 * 17 16 14 40 40 H 1.09008 * 110.37568 * 265.18917 * 22 9 8 41 41 H 1.09005 * 110.37678 * 27.53022 * 22 9 8 42 42 H 1.08996 * 109.46113 * 54.14782 * 23 2 1 43 43 H 1.08999 * 109.46341 * 294.17601 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3342 -0.1466 5 6 4.1195 0.5366 1.0140 6 6 3.5181 -0.8715 1.0210 7 1 3.7813 -1.3843 0.0959 8 6 4.0679 -1.6558 2.2141 9 7 5.5120 -1.8620 2.0410 10 6 5.7797 -2.9110 1.0400 11 6 6.6442 -3.9908 1.7242 12 6 7.2896 -3.2193 2.9087 13 1 8.1690 -2.6660 2.5793 14 6 7.6358 -4.1546 4.0385 15 1 7.1038 -4.0889 4.9762 16 6 8.6316 -5.0941 3.8753 17 7 9.2797 -5.1738 2.7337 18 14 9.0601 -6.2538 5.2756 19 1 8.2291 -7.4804 5.1744 20 1 10.4966 -6.6210 5.1922 21 1 8.7954 -5.5822 6.5732 22 6 6.1477 -2.2552 3.3165 23 6 1.9952 -0.7708 1.1339 24 1 -0.3634 0.4471 0.9252 25 1 -0.3633 0.5777 -0.8499 26 1 -0.3634 -1.0249 -0.0755 27 1 1.5635 1.9256 -0.8330 28 1 1.7324 1.8608 0.9376 29 1 3.7814 0.8567 -1.0904 30 1 3.9098 2.3511 -0.1317 31 1 3.8900 1.0355 1.9556 32 1 5.2004 0.4705 0.8898 33 1 3.5676 -2.6223 2.2752 34 1 3.8884 -1.0951 3.1314 35 1 4.8406 -3.3481 0.7007 36 1 6.3185 -2.4865 0.1929 37 1 6.0222 -4.8077 2.0902 38 1 7.4080 -4.3628 1.0414 39 1 9.9805 -5.8345 2.6190 40 1 6.5533 -1.3799 3.8241 41 1 5.4292 -2.7672 3.9567 42 1 1.5634 -1.7715 1.1243 43 1 1.7324 -0.2708 2.0661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:38 Heat of formation + Delta-G solvation = -9.438718 kcal Electronic energy + Delta-G solvation = -19250.394433 eV Core-core repulsion = 16522.370835 eV Total energy + Delta-G solvation = -2728.023598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31683 -37.75135 -34.21379 -32.79790 -31.68969 -29.43920 -28.17819 -26.74655 -25.40505 -23.83151 -22.83376 -21.52580 -19.95932 -19.63898 -19.04351 -16.44377 -15.77090 -15.33352 -15.13320 -14.66788 -14.63287 -14.32516 -13.77019 -13.63986 -13.06524 -12.71321 -12.47519 -12.36940 -12.13383 -12.02672 -11.77310 -11.52119 -11.12772 -11.01721 -10.84635 -10.78702 -10.53104 -10.34400 -10.31814 -10.13433 -9.97091 -9.59818 -9.18644 -8.83676 -8.42975 -8.37749 -7.54884 -6.01479 -4.04513 3.30351 3.37273 3.40321 3.80806 4.42445 4.65243 4.83497 4.94310 4.98568 5.15453 5.29720 5.30640 5.33198 5.44221 5.51044 5.56580 5.67806 5.70547 5.76194 5.81514 5.84990 5.96729 6.07802 6.11466 6.22509 6.25064 6.33650 6.52743 6.54974 6.61577 6.62231 6.87001 6.98694 6.99672 7.17019 7.20028 7.63467 7.74424 7.80169 7.92473 8.03810 8.44429 8.98202 9.59595 11.08576 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050099 B = 0.004017 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.763488 B = 6968.781122 C = 7095.168584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.105 4.105 6 C -0.076 4.076 7 H 0.078 0.922 8 C 0.058 3.942 9 N -0.530 5.530 10 C 0.041 3.959 11 C -0.120 4.120 12 C 0.049 3.951 13 H 0.040 0.960 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.047 3.953 23 C 0.061 3.939 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.405 10.520 -5.138 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.143 4.143 6 C -0.095 4.095 7 H 0.096 0.904 8 C -0.071 4.071 9 N -0.254 5.254 10 C -0.087 4.087 11 C -0.159 4.159 12 C 0.030 3.970 13 H 0.058 0.942 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.080 4.080 23 C -0.067 4.067 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.904 10.674 -5.828 18.472 hybrid contribution -0.480 -1.132 1.738 2.129 sum -14.384 9.542 -4.090 17.739 Atomic orbital electron populations 1.22340 0.87639 1.02136 1.00150 1.61884 1.07167 1.13892 1.43849 1.22105 0.96268 0.88889 0.99894 1.21625 0.93784 1.00137 1.00100 1.21495 1.01480 0.94234 0.97096 1.21134 0.92266 0.96727 0.99416 0.90383 1.22193 0.89701 0.97997 0.97207 1.63528 1.09059 1.43669 1.09156 1.22896 0.98401 0.92132 0.95285 1.22765 0.97694 0.96272 0.99215 1.19774 0.92189 0.91981 0.93080 0.94169 1.21053 1.18649 1.16739 0.98880 0.92691 1.24972 0.95896 0.97364 0.95580 1.69963 1.23643 1.35113 1.23876 0.86626 0.77557 0.81244 0.82759 1.20768 1.21218 1.19909 1.23155 0.97179 0.98206 0.89473 1.22134 0.95934 0.97782 0.90896 0.95937 0.91575 0.91430 0.91251 0.95234 0.91256 0.91819 0.92995 0.90148 0.95139 0.91887 0.94601 0.92044 0.93535 0.91283 0.93034 0.92151 0.94850 0.91045 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.59 60.06 0.58 0.81 16 2 N -0.54 -6.23 4.91 -242.96 -1.19 -7.42 16 3 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 4 C -0.12 -1.31 6.09 -26.64 -0.16 -1.48 16 5 C -0.11 -1.37 5.15 -26.61 -0.14 -1.50 16 6 C -0.08 -1.04 2.39 -90.54 -0.22 -1.26 16 7 H 0.08 1.18 7.47 -51.93 -0.39 0.79 16 8 C 0.06 0.92 3.97 -3.82 -0.02 0.90 16 9 N -0.53 -9.97 4.64 -231.25 -1.07 -11.04 16 10 C 0.04 0.79 6.22 -2.83 -0.02 0.77 16 11 C -0.12 -2.83 5.91 -24.77 -0.15 -2.98 16 12 C 0.05 1.23 2.84 -89.49 -0.25 0.98 16 13 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.51 -14.18 8.50 -34.44 -0.29 -14.48 16 15 H 0.05 1.49 7.77 -52.48 -0.41 1.09 16 16 C 0.06 1.78 5.37 -17.82 -0.10 1.68 16 17 N -0.89 -25.64 12.61 55.43 0.70 -24.94 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.05 1.00 6.08 -2.30 -0.01 0.99 16 23 C 0.06 0.74 4.75 -3.83 -0.02 0.72 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 33 H 0.03 0.49 7.78 -51.93 -0.40 0.09 16 34 H 0.06 0.96 7.99 -51.93 -0.42 0.55 16 35 H 0.04 0.65 7.20 -51.93 -0.37 0.27 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.13 8.03 -51.93 -0.42 0.71 16 38 H 0.07 1.74 7.84 -51.93 -0.41 1.33 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 41 H 0.03 0.72 7.68 -51.93 -0.40 0.32 16 42 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -28.12 329.00 -10.69 -38.81 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -8.24 Total: -2.40 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.82 Total: -14.27 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -1.57 Total: -43.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.12 -10.69 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.375 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds