Wall clock time and date at job start Mon Mar 30 2020 04:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46839 * 111.00234 * 2 1 4 4 C 1.53040 * 109.52859 * 185.83473 * 3 2 1 5 5 C 1.53128 * 109.30803 * 300.84508 * 4 3 2 6 6 C 1.53114 * 109.16134 * 57.59066 * 5 4 3 7 7 H 1.08994 * 109.50417 * 62.36317 * 6 5 4 8 8 C 1.53001 * 109.50358 * 182.44605 * 6 5 4 9 9 N 1.46898 * 109.46871 * 294.52396 * 8 6 5 10 10 C 1.47451 * 111.00015 * 284.39737 * 9 8 6 11 11 C 1.54314 * 107.36868 * 236.66318 * 10 9 8 12 12 C 1.55394 * 102.90062 * 337.89225 * 11 10 9 13 13 H 1.08998 * 110.90212 * 277.37685 * 12 11 10 14 14 C 1.50701 * 111.02597 * 153.63901 * 12 11 10 15 15 H 1.08004 * 119.99969 * 247.60376 * 14 12 11 16 16 C 1.37881 * 120.00360 * 67.60203 * 14 12 11 17 17 N 1.31513 * 119.99646 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99934 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47004 * 90.00582 * 18 16 14 20 20 H 1.48495 * 109.46926 * 209.99836 * 18 16 14 21 21 H 1.48491 * 109.47446 * 330.00202 * 18 16 14 22 22 C 1.47836 * 111.00034 * 163.55553 * 9 8 6 23 23 C 1.46857 * 110.99699 * 124.20729 * 2 1 3 24 24 H 1.08998 * 109.47624 * 295.79311 * 1 2 3 25 25 H 1.08999 * 109.46694 * 55.79543 * 1 2 3 26 26 H 1.08999 * 109.47305 * 175.78890 * 1 2 3 27 27 H 1.08997 * 109.46481 * 305.85150 * 3 2 1 28 28 H 1.09009 * 109.46440 * 65.82079 * 3 2 1 29 29 H 1.08995 * 109.49899 * 60.75905 * 4 3 2 30 30 H 1.08990 * 109.50692 * 180.83641 * 4 3 2 31 31 H 1.09004 * 109.48699 * 297.70194 * 5 4 3 32 32 H 1.08997 * 109.55040 * 177.51707 * 5 4 3 33 33 H 1.09002 * 109.47264 * 174.52423 * 8 6 5 34 34 H 1.08996 * 109.47158 * 54.51758 * 8 6 5 35 35 H 1.09001 * 109.88436 * 356.14402 * 10 9 8 36 36 H 1.08998 * 109.89002 * 117.17139 * 10 9 8 37 37 H 1.09004 * 110.70765 * 96.17595 * 11 10 9 38 38 H 1.09001 * 110.70650 * 219.40859 * 11 10 9 39 39 H 0.96996 * 119.99932 * 179.97438 * 17 16 14 40 40 H 1.09008 * 110.37568 * 265.18917 * 22 9 8 41 41 H 1.09005 * 110.37678 * 27.53022 * 22 9 8 42 42 H 1.08996 * 109.46113 * 54.14782 * 23 2 1 43 43 H 1.08999 * 109.46341 * 294.17601 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3342 -0.1466 5 6 4.1195 0.5366 1.0140 6 6 3.5181 -0.8715 1.0210 7 1 3.7813 -1.3843 0.0959 8 6 4.0679 -1.6558 2.2141 9 7 5.5120 -1.8620 2.0410 10 6 5.7797 -2.9110 1.0400 11 6 6.6442 -3.9908 1.7242 12 6 7.2896 -3.2193 2.9087 13 1 8.1690 -2.6660 2.5793 14 6 7.6358 -4.1546 4.0385 15 1 7.1038 -4.0889 4.9762 16 6 8.6316 -5.0941 3.8753 17 7 9.2797 -5.1738 2.7337 18 14 9.0601 -6.2538 5.2756 19 1 8.2291 -7.4804 5.1744 20 1 10.4966 -6.6210 5.1922 21 1 8.7954 -5.5822 6.5732 22 6 6.1477 -2.2552 3.3165 23 6 1.9952 -0.7708 1.1339 24 1 -0.3634 0.4471 0.9252 25 1 -0.3633 0.5777 -0.8499 26 1 -0.3634 -1.0249 -0.0755 27 1 1.5635 1.9256 -0.8330 28 1 1.7324 1.8608 0.9376 29 1 3.7814 0.8567 -1.0904 30 1 3.9098 2.3511 -0.1317 31 1 3.8900 1.0355 1.9556 32 1 5.2004 0.4705 0.8898 33 1 3.5676 -2.6223 2.2752 34 1 3.8884 -1.0951 3.1314 35 1 4.8406 -3.3481 0.7007 36 1 6.3185 -2.4865 0.1929 37 1 6.0222 -4.8077 2.0902 38 1 7.4080 -4.3628 1.0414 39 1 9.9805 -5.8345 2.6190 40 1 6.5533 -1.3799 3.8241 41 1 5.4292 -2.7672 3.9567 42 1 1.5634 -1.7715 1.1243 43 1 1.7324 -0.2708 2.0661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:38 Heat of formation + Delta-G solvation = -26.682793 kcal Electronic energy + Delta-G solvation = -19251.142192 eV Core-core repulsion = 16522.370835 eV Total energy + Delta-G solvation = -2728.771357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45016 -39.20691 -35.61986 -34.40142 -32.93057 -30.98955 -29.98068 -27.58423 -26.98297 -25.51794 -23.73196 -22.75366 -21.53223 -21.23006 -20.32537 -18.47399 -16.82092 -16.67920 -16.64154 -16.30408 -15.69132 -15.44747 -15.09893 -14.78286 -14.36200 -14.25960 -13.91893 -13.70879 -13.43979 -13.10962 -13.01610 -12.98165 -12.73077 -12.68698 -12.39007 -12.29512 -11.97537 -11.86108 -11.51051 -11.48157 -11.28411 -11.14707 -10.99697 -10.90132 -10.49762 -9.25790 -9.11548 -8.14714 -6.25143 1.40790 1.41417 1.51997 2.41758 2.91685 3.16325 3.29418 3.84994 3.96105 3.99493 4.12491 4.21818 4.33577 4.40920 4.50810 4.53584 4.55654 4.59505 4.65302 4.67742 4.70165 4.77334 4.85400 4.88851 4.94781 5.02677 5.03308 5.08011 5.18215 5.23969 5.27217 5.34526 5.52399 5.55831 5.57974 5.78377 5.90844 6.08123 6.12921 6.19308 6.37257 6.37848 6.84922 7.42736 8.95042 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050099 B = 0.004017 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.763488 B = 6968.781122 C = 7095.168584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.057 3.943 4 C -0.114 4.114 5 C -0.103 4.103 6 C -0.068 4.068 7 H 0.064 0.936 8 C 0.059 3.941 9 N -0.529 5.529 10 C 0.053 3.947 11 C -0.112 4.112 12 C 0.039 3.961 13 H 0.006 0.994 14 C -0.533 4.533 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.060 3.940 23 C 0.066 3.934 24 H 0.027 0.973 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 11.211 -4.853 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.283 5.283 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.141 4.141 6 C -0.087 4.087 7 H 0.082 0.918 8 C -0.070 4.070 9 N -0.253 5.253 10 C -0.075 4.075 11 C -0.152 4.152 12 C 0.019 3.981 13 H 0.024 0.976 14 C -0.572 4.572 15 H 0.073 0.927 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.782 3.218 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.067 4.067 23 C -0.062 4.062 24 H 0.046 0.954 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.697 11.379 -5.544 20.164 hybrid contribution 0.071 -1.319 1.627 2.095 sum -15.625 10.060 -3.917 18.992 Atomic orbital electron populations 1.22388 0.86156 1.02706 1.00969 1.61883 1.08603 1.14371 1.43434 1.22129 0.95559 0.88640 1.00712 1.21589 0.94473 1.00494 0.98667 1.21442 1.00263 0.94212 0.98145 1.21021 0.93640 0.96556 0.97527 0.91776 1.22278 0.87468 0.98465 0.98740 1.63529 1.11288 1.42779 1.07656 1.22754 0.98485 0.91079 0.95135 1.22565 0.97325 0.96848 0.98415 1.19728 0.92418 0.92548 0.93359 0.97609 1.21404 1.18943 1.17329 0.99505 0.92700 1.25782 0.95821 0.98976 0.98010 1.70092 1.24116 1.35857 1.25733 0.85580 0.77287 0.79109 0.79842 1.20139 1.20890 1.19072 1.22920 0.95928 0.97342 0.90533 1.22018 0.94438 0.98250 0.91501 0.95433 0.90317 0.91140 0.89715 0.94909 0.92081 0.90351 0.92729 0.92174 0.95201 0.91039 0.92686 0.91649 0.94730 0.93785 0.92998 0.91712 0.94828 0.90879 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 127.69 1.22 1.63 16 2 N -0.56 -11.42 4.91 -922.58 -4.53 -15.95 16 3 C 0.06 1.05 5.46 86.33 0.47 1.52 16 4 C -0.11 -2.31 6.09 30.65 0.19 -2.12 16 5 C -0.10 -2.52 5.15 30.68 0.16 -2.36 16 6 C -0.07 -1.75 2.39 -10.74 -0.03 -1.78 16 7 H 0.06 1.85 7.47 -2.39 -0.02 1.83 16 8 C 0.06 1.78 3.97 86.30 0.34 2.12 16 9 N -0.53 -19.54 4.64 -885.54 -4.11 -23.66 16 10 C 0.05 2.06 6.22 86.64 0.54 2.60 16 11 C -0.11 -5.40 5.91 31.86 0.19 -5.22 16 12 C 0.04 2.00 2.84 -10.06 -0.03 1.97 16 13 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 14 C -0.53 -29.83 8.50 25.60 0.22 -29.61 16 15 H 0.05 2.99 7.77 -2.91 -0.02 2.97 16 16 C 0.01 0.74 5.37 84.66 0.45 1.20 16 17 N -0.92 -54.25 12.61 21.45 0.27 -53.98 16 18 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.06 2.56 6.08 86.78 0.53 3.09 16 23 C 0.07 1.46 4.75 86.32 0.41 1.87 16 24 H 0.03 0.40 8.14 -2.39 -0.02 0.39 16 25 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.06 1.71 7.84 -2.39 -0.02 1.70 16 33 H 0.03 0.91 7.78 -2.39 -0.02 0.89 16 34 H 0.07 2.04 7.99 -2.39 -0.02 2.02 16 35 H 0.05 1.93 7.20 -2.39 -0.02 1.91 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.03 1.70 8.03 -2.39 -0.02 1.68 16 38 H 0.04 2.29 7.84 -2.39 -0.02 2.27 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.03 1.42 7.68 -2.38 -0.02 1.40 16 42 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -60.30 329.00 -0.75 -61.06 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.93 Total: 11.69 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.67 Total: -25.10 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -8.37 Total: -93.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -60.30 -0.75 -61.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.373 kcal (2) G-P(sol) polarization free energy of solvation -60.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds