Wall clock time and date at job start Mon Mar 30 2020 05:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00396 * 2 1 4 4 C 1.46904 * 111.00021 * 123.95567 * 2 1 3 5 5 H 1.09005 * 110.87264 * 300.47715 * 4 2 1 6 6 C 1.55145 * 110.98913 * 176.63642 * 4 2 1 7 7 C 1.54315 * 103.01617 * 206.21228 * 6 4 2 8 8 N 1.47442 * 107.23632 * 22.28816 * 7 6 4 9 9 C 1.46892 * 111.00559 * 123.25410 * 8 7 6 10 10 H 1.09008 * 110.01838 * 300.65711 * 9 8 7 11 11 C 1.54263 * 110.03326 * 62.04189 * 9 8 7 12 12 C 1.54892 * 104.19822 * 142.89649 * 11 9 8 13 13 C 1.54895 * 102.74724 * 322.06066 * 12 11 9 14 14 H 1.08998 * 110.48539 * 279.26282 * 13 12 11 15 15 C 1.50695 * 110.48640 * 156.74871 * 13 12 11 16 16 H 1.07996 * 120.00523 * 241.45664 * 15 13 12 17 17 C 1.37882 * 119.99706 * 61.45450 * 15 13 12 18 18 N 1.31516 * 120.00238 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 119.99982 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46776 * 90.00320 * 19 17 15 21 21 H 1.48496 * 109.47024 * 210.00153 * 19 17 15 22 22 H 1.48499 * 109.46760 * 330.00359 * 19 17 15 23 23 C 1.53878 * 110.03644 * 179.21135 * 9 8 7 24 24 C 1.47850 * 108.56462 * 0.98308 * 8 7 6 25 25 H 1.08998 * 109.46734 * 296.04805 * 1 2 3 26 26 H 1.09000 * 109.46921 * 56.04475 * 1 2 3 27 27 H 1.09003 * 109.46747 * 176.04923 * 1 2 3 28 28 H 1.09001 * 109.47383 * 188.88408 * 3 2 1 29 29 H 1.09003 * 109.46584 * 308.88229 * 3 2 1 30 30 H 1.08994 * 109.47198 * 68.87851 * 3 2 1 31 31 H 1.09005 * 110.70437 * 87.83532 * 6 4 2 32 32 H 1.08993 * 110.70977 * 324.59773 * 6 4 2 33 33 H 1.09000 * 109.89376 * 262.87424 * 7 6 4 34 34 H 1.09001 * 110.02520 * 141.77029 * 7 6 4 35 35 H 1.09000 * 110.49395 * 261.57740 * 11 9 8 36 36 H 1.09004 * 110.48228 * 24.08736 * 11 9 8 37 37 H 1.08997 * 110.75204 * 80.37322 * 12 11 9 38 38 H 1.09000 * 110.75774 * 203.74842 * 12 11 9 39 39 H 0.97000 * 120.00157 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.02593 * 0.02562 * 23 9 8 41 41 H 1.09007 * 110.02930 * 121.42997 * 23 9 8 42 42 H 1.09004 * 110.36946 * 94.73633 * 24 8 7 43 43 H 1.08996 * 110.37566 * 217.07469 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6523 -0.3439 2.0822 6 6 3.5446 -0.8369 1.0906 7 6 3.8563 -2.1402 1.8558 8 7 2.6436 -2.9773 1.8051 9 6 2.9343 -4.2901 1.2137 10 1 3.3213 -4.1662 0.2022 11 6 3.9605 -5.0457 2.0830 12 6 3.4993 -6.5229 2.0175 13 6 1.9554 -6.4005 2.0453 14 1 1.6026 -6.2558 3.0664 15 6 1.3184 -7.6231 1.4368 16 1 0.7004 -7.5284 0.5562 17 6 1.5245 -8.8627 2.0043 18 7 2.2767 -8.9780 3.0769 19 14 0.7343 -10.3782 1.2503 20 1 1.6513 -10.9637 0.2397 21 1 0.4672 -11.3786 2.3148 22 1 -0.5438 -9.9969 0.5972 23 6 1.6595 -5.1515 1.1897 24 6 1.6103 -2.2622 1.0260 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0736 1.3467 -0.1587 29 1 1.5234 1.9417 -0.8000 30 1 1.7801 1.8433 0.9586 31 1 3.9851 0.0221 1.5969 32 1 3.8964 -0.9009 0.0610 33 1 4.1059 -1.9113 2.8919 34 1 4.6872 -2.6621 1.3812 35 1 4.9630 -4.9404 1.6683 36 1 3.9330 -4.6805 3.1097 37 1 3.8330 -6.9910 1.0915 38 1 3.8583 -7.0785 2.8838 39 1 2.4221 -9.8501 3.4759 40 1 0.8250 -4.5951 1.6165 41 1 1.4273 -5.4464 0.1663 42 1 1.6310 -2.5828 -0.0156 43 1 0.6239 -2.4333 1.4570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:04 Heat of formation + Delta-G solvation = 1.578660 kcal Electronic energy + Delta-G solvation = -19423.675449 eV Core-core repulsion = 16696.129601 eV Total energy + Delta-G solvation = -2727.545848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55988 -37.30553 -35.26973 -32.38473 -30.22964 -29.18445 -27.88698 -27.29863 -26.06983 -24.05422 -23.08750 -21.16580 -20.22432 -18.99533 -18.61452 -16.53035 -16.22218 -16.04428 -14.75177 -14.66072 -14.48989 -14.25222 -13.70241 -13.43118 -13.18523 -12.56829 -12.46255 -12.31137 -12.21054 -12.09297 -11.82171 -11.31938 -11.16554 -10.96597 -10.86332 -10.75836 -10.63561 -10.44012 -10.16064 -9.92265 -9.73905 -9.43514 -9.05786 -8.66480 -8.51353 -8.27429 -7.88076 -5.91946 -3.94400 3.35271 3.41890 3.45220 3.69499 4.42938 4.50892 4.59428 4.78220 5.00816 5.11975 5.19129 5.33876 5.36658 5.39829 5.41791 5.60360 5.66595 5.68197 5.74305 5.78848 5.80728 5.88122 6.05230 6.07468 6.10278 6.23625 6.41915 6.63391 6.65700 6.80271 6.86243 6.92964 6.96217 7.16052 7.29776 7.39107 7.46104 7.69832 7.82592 8.00497 8.16117 8.56216 9.08431 9.68946 11.17148 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037547 B = 0.004585 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.546650 B = 6105.663287 C = 6670.573127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.070 3.930 5 H 0.055 0.945 6 C -0.132 4.132 7 C 0.044 3.956 8 N -0.520 5.520 9 C 0.080 3.920 10 H 0.030 0.970 11 C -0.120 4.120 12 C -0.097 4.097 13 C 0.052 3.948 14 H 0.029 0.971 15 C -0.512 4.512 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.108 4.108 24 C 0.056 3.944 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.258 0.742 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 18.021 -4.138 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.039 4.039 5 H 0.073 0.927 6 C -0.171 4.171 7 C -0.085 4.085 8 N -0.245 5.245 9 C -0.028 4.028 10 H 0.048 0.952 11 C -0.158 4.158 12 C -0.135 4.135 13 C 0.033 3.967 14 H 0.047 0.953 15 C -0.551 4.551 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.146 4.146 24 C -0.072 4.072 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.332 17.556 -3.940 18.042 hybrid contribution -0.352 -0.311 -0.481 0.672 sum 0.980 17.245 -4.421 17.830 Atomic orbital electron populations 1.22408 0.87155 1.02753 1.00229 1.62015 1.08054 1.13552 1.42785 1.22369 1.01029 0.88839 1.00067 1.22861 0.95052 0.94527 0.91433 0.92705 1.22823 0.94710 0.98348 1.01208 1.22748 0.93373 0.92205 1.00153 1.63767 1.07302 1.02852 1.50603 1.22608 0.97776 0.87694 0.94728 0.95161 1.22546 0.95601 0.98534 0.99086 1.22383 0.99036 0.91198 1.00931 1.19381 0.91864 0.90570 0.94845 0.95273 1.21234 1.29963 0.91785 1.12068 0.92854 1.24972 0.95270 0.98791 0.94906 1.69966 1.38458 1.23698 1.20739 0.86677 0.79782 0.83155 0.78859 1.20815 1.21336 1.20012 1.22331 0.94647 0.97127 1.00491 1.22935 0.96562 0.90461 0.97239 0.95652 0.91516 0.90852 0.91316 0.91596 0.95763 0.91435 0.90724 0.90974 0.92481 0.94098 0.91759 0.93662 0.91238 0.93213 0.93053 0.93096 0.92631 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.39 60.06 0.56 0.79 16 2 N -0.54 -6.10 4.92 -240.59 -1.18 -7.28 16 3 C 0.03 0.23 9.28 60.06 0.56 0.79 16 4 C 0.07 0.87 2.70 -65.57 -0.18 0.69 16 5 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 6 C -0.13 -1.55 5.30 -24.91 -0.13 -1.68 16 7 C 0.04 0.60 6.34 -2.84 -0.02 0.58 16 8 N -0.52 -8.59 4.93 -221.96 -1.09 -9.68 16 9 C 0.08 1.50 2.22 -66.60 -0.15 1.35 16 10 H 0.03 0.57 8.13 -51.92 -0.42 0.15 16 11 C -0.12 -2.35 5.43 -25.07 -0.14 -2.49 16 12 C -0.10 -2.32 5.61 -24.73 -0.14 -2.46 16 13 C 0.05 1.33 2.78 -90.11 -0.25 1.08 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.51 -14.35 8.49 -34.44 -0.29 -14.64 16 16 H 0.05 1.48 7.58 -52.49 -0.40 1.08 16 17 C 0.06 1.74 5.33 -17.82 -0.09 1.65 16 18 N -0.89 -25.95 12.00 55.43 0.67 -25.29 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.11 -2.33 5.63 -25.61 -0.14 -2.47 16 24 C 0.06 0.83 4.19 -2.30 -0.01 0.82 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 27 H 0.07 0.78 7.22 -51.93 -0.37 0.40 16 28 H 0.07 0.60 7.34 -51.93 -0.38 0.21 16 29 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 30 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.80 7.07 -51.93 -0.37 0.43 16 35 H 0.04 0.72 8.03 -51.93 -0.42 0.31 16 36 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 37 H 0.04 1.11 8.05 -51.93 -0.42 0.69 16 38 H 0.07 1.80 7.36 -51.93 -0.38 1.42 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 1.08 6.91 -51.93 -0.36 0.72 16 41 H 0.05 1.11 7.69 -51.93 -0.40 0.71 16 42 H 0.06 0.88 7.80 -51.93 -0.40 0.47 16 43 H 0.08 1.13 7.59 -51.93 -0.39 0.74 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -28.88 325.59 -10.21 -39.09 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.06 Total: -2.35 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.42 Total: -15.98 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -1.61 Total: -42.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.88 -10.21 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.669 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds