Wall clock time and date at job start Mon Mar 30 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00396 * 2 1 4 4 C 1.46904 * 111.00021 * 123.95567 * 2 1 3 5 5 H 1.09005 * 110.87264 * 300.47715 * 4 2 1 6 6 C 1.55145 * 110.98913 * 176.63642 * 4 2 1 7 7 C 1.54315 * 103.01617 * 206.21228 * 6 4 2 8 8 N 1.47442 * 107.23632 * 22.28816 * 7 6 4 9 9 C 1.46892 * 111.00559 * 123.25410 * 8 7 6 10 10 H 1.09008 * 110.01838 * 300.65711 * 9 8 7 11 11 C 1.54263 * 110.03326 * 62.04189 * 9 8 7 12 12 C 1.54892 * 104.19822 * 142.89649 * 11 9 8 13 13 C 1.54895 * 102.74724 * 322.06066 * 12 11 9 14 14 H 1.08998 * 110.48539 * 279.26282 * 13 12 11 15 15 C 1.50695 * 110.48640 * 156.74871 * 13 12 11 16 16 H 1.07996 * 120.00523 * 241.45664 * 15 13 12 17 17 C 1.37882 * 119.99706 * 61.45450 * 15 13 12 18 18 N 1.31516 * 120.00238 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 119.99982 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46776 * 90.00320 * 19 17 15 21 21 H 1.48496 * 109.47024 * 210.00153 * 19 17 15 22 22 H 1.48499 * 109.46760 * 330.00359 * 19 17 15 23 23 C 1.53878 * 110.03644 * 179.21135 * 9 8 7 24 24 C 1.47850 * 108.56462 * 0.98308 * 8 7 6 25 25 H 1.08998 * 109.46734 * 296.04805 * 1 2 3 26 26 H 1.09000 * 109.46921 * 56.04475 * 1 2 3 27 27 H 1.09003 * 109.46747 * 176.04923 * 1 2 3 28 28 H 1.09001 * 109.47383 * 188.88408 * 3 2 1 29 29 H 1.09003 * 109.46584 * 308.88229 * 3 2 1 30 30 H 1.08994 * 109.47198 * 68.87851 * 3 2 1 31 31 H 1.09005 * 110.70437 * 87.83532 * 6 4 2 32 32 H 1.08993 * 110.70977 * 324.59773 * 6 4 2 33 33 H 1.09000 * 109.89376 * 262.87424 * 7 6 4 34 34 H 1.09001 * 110.02520 * 141.77029 * 7 6 4 35 35 H 1.09000 * 110.49395 * 261.57740 * 11 9 8 36 36 H 1.09004 * 110.48228 * 24.08736 * 11 9 8 37 37 H 1.08997 * 110.75204 * 80.37322 * 12 11 9 38 38 H 1.09000 * 110.75774 * 203.74842 * 12 11 9 39 39 H 0.97000 * 120.00157 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.02593 * 0.02562 * 23 9 8 41 41 H 1.09007 * 110.02930 * 121.42997 * 23 9 8 42 42 H 1.09004 * 110.36946 * 94.73633 * 24 8 7 43 43 H 1.08996 * 110.37566 * 217.07469 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6523 -0.3439 2.0822 6 6 3.5446 -0.8369 1.0906 7 6 3.8563 -2.1402 1.8558 8 7 2.6436 -2.9773 1.8051 9 6 2.9343 -4.2901 1.2137 10 1 3.3213 -4.1662 0.2022 11 6 3.9605 -5.0457 2.0830 12 6 3.4993 -6.5229 2.0175 13 6 1.9554 -6.4005 2.0453 14 1 1.6026 -6.2558 3.0664 15 6 1.3184 -7.6231 1.4368 16 1 0.7004 -7.5284 0.5562 17 6 1.5245 -8.8627 2.0043 18 7 2.2767 -8.9780 3.0769 19 14 0.7343 -10.3782 1.2503 20 1 1.6513 -10.9637 0.2397 21 1 0.4672 -11.3786 2.3148 22 1 -0.5438 -9.9969 0.5972 23 6 1.6595 -5.1515 1.1897 24 6 1.6103 -2.2622 1.0260 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0736 1.3467 -0.1587 29 1 1.5234 1.9417 -0.8000 30 1 1.7801 1.8433 0.9586 31 1 3.9851 0.0221 1.5969 32 1 3.8964 -0.9009 0.0610 33 1 4.1059 -1.9113 2.8919 34 1 4.6872 -2.6621 1.3812 35 1 4.9630 -4.9404 1.6683 36 1 3.9330 -4.6805 3.1097 37 1 3.8330 -6.9910 1.0915 38 1 3.8583 -7.0785 2.8838 39 1 2.4221 -9.8501 3.4759 40 1 0.8250 -4.5951 1.6165 41 1 1.4273 -5.4464 0.1663 42 1 1.6310 -2.5828 -0.0156 43 1 0.6239 -2.4333 1.4570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:03 Heat of formation + Delta-G solvation = -16.892799 kcal Electronic energy + Delta-G solvation = -19424.476432 eV Core-core repulsion = 16696.129601 eV Total energy + Delta-G solvation = -2728.346831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76254 -38.66050 -36.60147 -34.36647 -31.56688 -30.56947 -29.26725 -28.39476 -27.60323 -25.73243 -24.26872 -22.40671 -21.44377 -20.60450 -20.20169 -18.53329 -17.42389 -17.18326 -16.54921 -15.84265 -15.62101 -15.50807 -15.11250 -14.74656 -14.31607 -14.14336 -13.96751 -13.77839 -13.21509 -13.12832 -12.98168 -12.91321 -12.67300 -12.59325 -12.31350 -12.09393 -11.87656 -11.80314 -11.70642 -11.57339 -11.44602 -11.35710 -10.98850 -10.76871 -10.42496 -9.34412 -9.16944 -8.08796 -6.19125 1.41714 1.41977 1.52576 2.44976 2.75011 3.20684 3.30983 3.56064 3.73555 4.00636 4.05825 4.19069 4.26095 4.37491 4.40976 4.48245 4.52258 4.65309 4.66602 4.75482 4.80508 4.85131 4.91373 4.95518 4.97916 5.00045 5.02762 5.03870 5.08473 5.22137 5.24252 5.32896 5.44420 5.51140 5.66723 5.96062 5.99142 6.05163 6.07735 6.20944 6.27356 6.43060 6.91701 7.47943 8.99552 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037547 B = 0.004585 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.546650 B = 6105.663287 C = 6670.573127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.552 5.552 3 C 0.025 3.975 4 C 0.078 3.922 5 H 0.054 0.946 6 C -0.121 4.121 7 C 0.040 3.960 8 N -0.535 5.535 9 C 0.093 3.907 10 H 0.037 0.963 11 C -0.106 4.106 12 C -0.090 4.090 13 C 0.043 3.957 14 H -0.007 1.007 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.098 4.098 24 C 0.057 3.943 25 H 0.029 0.971 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.260 0.740 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 19.615 -5.130 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.277 5.277 3 C -0.123 4.123 4 C -0.031 4.031 5 H 0.072 0.928 6 C -0.159 4.159 7 C -0.087 4.087 8 N -0.260 5.260 9 C -0.016 4.016 10 H 0.055 0.945 11 C -0.143 4.143 12 C -0.129 4.129 13 C 0.025 3.975 14 H 0.011 0.989 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.136 4.136 24 C -0.071 4.071 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.693 19.173 -4.939 19.871 hybrid contribution -0.499 -0.790 -0.145 0.945 sum 1.195 18.383 -5.084 19.110 Atomic orbital electron populations 1.22427 0.86667 1.02365 1.01108 1.62015 1.08683 1.14892 1.42109 1.22427 1.01408 0.87588 1.00831 1.22720 0.95585 0.92855 0.91915 0.92832 1.22754 0.94083 0.97983 1.01106 1.22836 0.92089 0.92767 1.01049 1.63670 1.09029 1.02512 1.50742 1.22327 0.95634 0.88628 0.94998 0.94461 1.22394 0.97122 0.95255 0.99572 1.22167 0.97913 0.93886 0.98941 1.19360 0.92900 0.91857 0.93407 0.98865 1.21590 1.30295 0.93126 1.12216 0.93122 1.25764 0.95758 1.01804 0.95321 1.70099 1.39431 1.24405 1.21843 0.85636 0.79050 0.79321 0.78137 1.20026 1.20897 1.19346 1.22150 0.96362 0.95926 0.99142 1.22888 0.95727 0.92301 0.96146 0.95279 0.90008 0.92032 0.90770 0.90352 0.95298 0.89113 0.90755 0.90255 0.92343 0.91500 0.91854 0.94832 0.94006 0.93147 0.93033 0.93576 0.93670 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.39 127.69 1.20 1.61 16 2 N -0.55 -11.25 4.92 -915.09 -4.50 -15.75 16 3 C 0.03 0.38 9.28 127.69 1.18 1.57 16 4 C 0.08 1.78 2.70 46.30 0.12 1.91 16 5 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 6 C -0.12 -2.47 5.30 31.78 0.17 -2.30 16 7 C 0.04 1.02 6.34 86.65 0.55 1.57 16 8 N -0.53 -17.00 4.93 -856.16 -4.22 -21.22 16 9 C 0.09 3.41 2.22 45.64 0.10 3.51 16 10 H 0.04 1.34 8.13 -2.38 -0.02 1.32 16 11 C -0.11 -4.08 5.43 31.67 0.17 -3.90 16 12 C -0.09 -4.43 5.61 31.89 0.18 -4.25 16 13 C 0.04 2.29 2.78 -10.47 -0.03 2.26 16 14 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 15 C -0.53 -30.63 8.49 25.60 0.22 -30.41 16 16 H 0.05 2.85 7.58 -2.91 -0.02 2.83 16 17 C 0.01 0.70 5.33 84.66 0.45 1.15 16 18 N -0.92 -54.84 12.00 21.45 0.26 -54.58 16 19 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.10 -4.27 5.63 31.32 0.18 -4.09 16 24 C 0.06 1.64 4.19 86.77 0.36 2.01 16 25 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 1.23 8.07 -2.39 -0.02 1.22 16 27 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 28 H 0.07 1.04 7.34 -2.39 -0.02 1.03 16 29 H 0.08 0.99 8.04 -2.39 -0.02 0.98 16 30 H 0.03 0.42 8.13 -2.39 -0.02 0.40 16 31 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.47 7.07 -2.39 -0.02 1.45 16 35 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 36 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 37 H 0.03 1.67 8.05 -2.39 -0.02 1.66 16 38 H 0.04 2.24 7.36 -2.39 -0.02 2.22 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.05 2.20 6.91 -2.39 -0.02 2.19 16 41 H 0.05 2.02 7.69 -2.38 -0.02 2.00 16 42 H 0.04 1.39 7.80 -2.38 -0.02 1.37 16 43 H 0.07 1.97 7.59 -2.39 -0.02 1.96 16 Total: -1.00 -62.59 325.59 -0.64 -63.24 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.94 Total: 10.96 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.86 Total: -29.39 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -8.46 Total: -91.55 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.59 -0.64 -63.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.345 kcal (2) G-P(sol) polarization free energy of solvation -62.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds