Wall clock time and date at job start Mon Mar 30 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46893 * 110.99912 * 2 1 4 4 C 1.46901 * 111.00090 * 123.95960 * 2 1 3 5 5 H 1.09007 * 110.87137 * 298.78772 * 4 2 1 6 6 C 1.55139 * 110.98949 * 174.94704 * 4 2 1 7 7 C 1.54319 * 103.01696 * 206.21161 * 6 4 2 8 8 N 1.47443 * 107.23399 * 22.28462 * 7 6 4 9 9 C 1.46896 * 111.00154 * 123.25267 * 8 7 6 10 10 H 1.09003 * 110.54345 * 301.03528 * 9 8 7 11 11 C 1.54264 * 110.48853 * 178.42059 * 9 8 7 12 12 C 1.53882 * 106.60280 * 217.71363 * 11 9 8 13 13 C 1.54265 * 106.59368 * 0.02562 * 12 11 9 14 14 H 1.08997 * 110.48819 * 264.79506 * 13 12 11 15 15 C 1.50700 * 110.48580 * 142.28712 * 13 12 11 16 16 H 1.07997 * 120.00561 * 241.45323 * 15 13 12 17 17 C 1.37888 * 119.99903 * 61.45277 * 15 13 12 18 18 N 1.31508 * 119.99660 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99919 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47107 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47006 * 120.00032 * 19 17 15 22 22 H 1.48503 * 109.46923 * 240.00139 * 19 17 15 23 23 C 1.54892 * 104.20036 * 23.60959 * 13 12 11 24 24 C 1.47845 * 108.56839 * 0.98996 * 8 7 6 25 25 H 1.08995 * 109.46655 * 296.04037 * 1 2 3 26 26 H 1.09003 * 109.47055 * 56.04667 * 1 2 3 27 27 H 1.09001 * 109.47174 * 176.04300 * 1 2 3 28 28 H 1.08999 * 109.47208 * 189.38770 * 3 2 1 29 29 H 1.08997 * 109.47406 * 309.38538 * 3 2 1 30 30 H 1.09001 * 109.47359 * 69.39180 * 3 2 1 31 31 H 1.09001 * 110.70510 * 87.83554 * 6 4 2 32 32 H 1.08992 * 110.85466 * 324.66361 * 6 4 2 33 33 H 1.08996 * 109.89264 * 262.87833 * 7 6 4 34 34 H 1.08995 * 110.02146 * 141.76115 * 7 6 4 35 35 H 1.09001 * 110.03477 * 337.00162 * 11 9 8 36 36 H 1.09004 * 110.03549 * 98.38306 * 11 9 8 37 37 H 1.08999 * 110.03134 * 119.28319 * 12 11 9 38 38 H 1.08999 * 110.03044 * 240.66784 * 12 11 9 39 39 H 0.97003 * 119.99926 * 179.97438 * 18 17 15 40 40 H 1.09001 * 110.75735 * 203.74331 * 23 13 12 41 41 H 1.09002 * 110.75365 * 80.36997 * 23 13 12 42 42 H 1.08996 * 110.38105 * 94.72968 * 24 8 7 43 43 H 1.08995 * 110.37496 * 217.07734 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.6768 -0.3264 2.0827 6 6 3.5417 -0.8729 1.0677 7 6 3.8355 -2.1750 1.8419 8 7 2.6034 -2.9845 1.8187 9 6 2.8550 -4.3097 1.2369 10 1 3.2357 -4.2149 0.2200 11 6 1.5682 -5.1603 1.2545 12 6 1.9985 -6.6021 1.5769 13 6 3.5318 -6.5771 1.7447 14 1 4.0223 -6.8507 0.8105 15 6 3.9563 -7.5056 2.8532 16 1 4.4664 -7.1134 3.7206 17 6 3.6934 -8.8559 2.7601 18 7 3.0718 -9.3335 1.7042 19 14 4.2189 -10.0067 4.1346 20 1 4.8944 -9.2264 5.2023 21 1 3.0233 -10.6844 4.6970 22 1 5.1574 -11.0241 3.5966 23 6 3.8494 -5.1076 2.1170 24 6 1.5747 -2.2542 1.0478 25 1 -0.3632 0.4511 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0722 1.3473 -0.1676 29 1 1.5169 1.9443 -0.7942 30 1 1.7880 1.8402 0.9619 31 1 4.0095 -0.0191 1.5580 32 1 3.8787 -0.9545 0.0344 33 1 4.1062 -1.9412 2.8715 34 1 4.6467 -2.7207 1.3601 35 1 0.8882 -4.7929 2.0231 36 1 1.0832 -5.1240 0.2790 37 1 1.5274 -6.9343 2.5020 38 1 1.7221 -7.2662 0.7580 39 1 2.8871 -10.2835 1.6385 40 1 4.8788 -4.8578 1.8599 41 1 3.6598 -4.9276 3.1752 42 1 1.5719 -2.5858 0.0095 43 1 0.5915 -2.3982 1.4957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:07 Heat of formation + Delta-G solvation = -0.376481 kcal Electronic energy + Delta-G solvation = -19363.697434 eV Core-core repulsion = 16636.066804 eV Total energy + Delta-G solvation = -2727.630630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.53796 -37.30600 -35.32258 -32.41039 -30.24569 -29.10620 -28.03344 -27.20308 -26.20206 -23.71945 -23.44889 -21.08548 -20.20735 -18.99740 -18.75624 -16.56427 -16.19096 -15.74729 -14.95085 -14.72580 -14.52789 -14.18547 -13.97831 -13.30797 -13.16403 -12.56510 -12.53722 -12.30054 -12.21402 -12.08970 -11.86941 -11.36929 -11.15988 -10.99390 -10.86441 -10.78511 -10.71774 -10.41853 -10.01401 -9.99140 -9.85691 -9.41002 -9.02297 -8.62552 -8.53976 -8.30927 -7.92306 -5.93529 -3.95477 3.34308 3.42232 3.46578 3.67232 4.40404 4.49947 4.59233 4.78080 4.98480 5.11548 5.16605 5.31311 5.34508 5.38566 5.40916 5.58074 5.63996 5.70846 5.71694 5.75440 5.80687 5.87635 6.03358 6.04230 6.06976 6.24675 6.39121 6.60063 6.67167 6.82396 6.88210 6.90983 6.93130 7.09568 7.29228 7.35069 7.47647 7.65532 7.82157 8.00419 8.11355 8.55542 9.07588 9.68026 11.16239 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051137 B = 0.004245 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.416914 B = 6594.257321 C = 6917.026363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.070 3.930 5 H 0.055 0.945 6 C -0.132 4.132 7 C 0.044 3.956 8 N -0.521 5.521 9 C 0.074 3.926 10 H 0.037 0.963 11 C -0.117 4.117 12 C -0.092 4.092 13 C 0.048 3.952 14 H 0.025 0.975 15 C -0.509 4.509 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.103 4.103 24 C 0.055 3.945 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.258 0.742 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 18.562 -3.098 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.038 4.038 5 H 0.073 0.927 6 C -0.171 4.171 7 C -0.084 4.084 8 N -0.245 5.245 9 C -0.034 4.034 10 H 0.055 0.945 11 C -0.155 4.155 12 C -0.131 4.131 13 C 0.029 3.971 14 H 0.044 0.956 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.141 4.141 24 C -0.073 4.073 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.311 18.073 -3.096 18.633 hybrid contribution 0.181 -0.175 0.580 0.633 sum -3.130 17.898 -2.516 18.343 Atomic orbital electron populations 1.22405 0.87249 1.02639 1.00230 1.62017 1.07974 1.13617 1.42811 1.22368 1.01095 0.88778 1.00059 1.22858 0.95172 0.94429 0.91387 0.92728 1.22821 0.94588 0.98384 1.01286 1.22744 0.93097 0.92346 1.00211 1.63722 1.07024 1.02754 1.50990 1.22825 0.97697 0.87169 0.95663 0.94540 1.22292 0.95945 0.97839 0.99438 1.22010 0.99168 0.91309 1.00581 1.19420 0.91907 0.89245 0.96479 0.95641 1.21209 1.37203 0.91897 1.04466 0.92634 1.24984 0.95239 0.98233 0.95610 1.69989 1.41597 1.13257 1.28094 0.86605 0.78279 0.80997 0.82529 1.19812 1.21132 1.21179 1.22629 0.95247 0.97273 0.98955 1.22941 0.96446 0.90673 0.97264 0.95678 0.91514 0.90958 0.91270 0.91589 0.95743 0.91420 0.90682 0.90860 0.92199 0.92377 0.94049 0.92978 0.92859 0.93267 0.94031 0.91577 0.92732 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.37 60.07 0.56 0.78 16 2 N -0.54 -5.93 4.92 -240.59 -1.18 -7.11 16 3 C 0.03 0.22 9.30 60.06 0.56 0.78 16 4 C 0.07 0.85 2.69 -65.57 -0.18 0.67 16 5 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 6 C -0.13 -1.56 5.39 -24.91 -0.13 -1.69 16 7 C 0.04 0.63 6.39 -2.84 -0.02 0.61 16 8 N -0.52 -8.45 4.99 -221.30 -1.10 -9.56 16 9 C 0.07 1.39 2.11 -66.04 -0.14 1.25 16 10 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.12 -2.31 5.72 -25.61 -0.15 -2.45 16 12 C -0.09 -2.21 5.40 -25.61 -0.14 -2.35 16 13 C 0.05 1.23 2.79 -90.11 -0.25 0.98 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.51 -14.24 8.40 -34.44 -0.29 -14.53 16 16 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 17 C 0.06 1.71 5.33 -17.82 -0.09 1.61 16 18 N -0.89 -25.99 12.35 55.43 0.68 -25.31 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.10 -2.20 5.13 -24.72 -0.13 -2.32 16 24 C 0.05 0.78 4.41 -2.30 -0.01 0.77 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.54 8.06 -51.93 -0.42 0.13 16 27 H 0.07 0.71 7.16 -51.93 -0.37 0.34 16 28 H 0.07 0.59 7.40 -51.93 -0.38 0.21 16 29 H 0.07 0.50 8.03 -51.93 -0.42 0.09 16 30 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 35 H 0.06 1.12 7.99 -51.93 -0.41 0.70 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 1.34 7.83 -51.93 -0.41 0.93 16 38 H 0.05 1.35 7.94 -51.93 -0.41 0.94 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.04 0.84 7.69 -51.93 -0.40 0.44 16 41 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 42 H 0.05 0.82 7.81 -51.93 -0.41 0.42 16 43 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -28.86 327.76 -10.26 -39.12 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -8.17 Total: -2.79 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -0.40 Total: -15.89 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -1.60 Total: -41.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.86 -10.26 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.744 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds