Wall clock time and date at job start Mon Mar 30 2020 05:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46893 * 110.99912 * 2 1 4 4 C 1.46901 * 111.00090 * 123.95960 * 2 1 3 5 5 H 1.09007 * 110.87137 * 298.78772 * 4 2 1 6 6 C 1.55139 * 110.98949 * 174.94704 * 4 2 1 7 7 C 1.54319 * 103.01696 * 206.21161 * 6 4 2 8 8 N 1.47443 * 107.23399 * 22.28462 * 7 6 4 9 9 C 1.46896 * 111.00154 * 123.25267 * 8 7 6 10 10 H 1.09003 * 110.54345 * 301.03528 * 9 8 7 11 11 C 1.54264 * 110.48853 * 178.42059 * 9 8 7 12 12 C 1.53882 * 106.60280 * 217.71363 * 11 9 8 13 13 C 1.54265 * 106.59368 * 0.02562 * 12 11 9 14 14 H 1.08997 * 110.48819 * 264.79506 * 13 12 11 15 15 C 1.50700 * 110.48580 * 142.28712 * 13 12 11 16 16 H 1.07997 * 120.00561 * 241.45323 * 15 13 12 17 17 C 1.37888 * 119.99903 * 61.45277 * 15 13 12 18 18 N 1.31508 * 119.99660 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99919 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47107 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47006 * 120.00032 * 19 17 15 22 22 H 1.48503 * 109.46923 * 240.00139 * 19 17 15 23 23 C 1.54892 * 104.20036 * 23.60959 * 13 12 11 24 24 C 1.47845 * 108.56839 * 0.98996 * 8 7 6 25 25 H 1.08995 * 109.46655 * 296.04037 * 1 2 3 26 26 H 1.09003 * 109.47055 * 56.04667 * 1 2 3 27 27 H 1.09001 * 109.47174 * 176.04300 * 1 2 3 28 28 H 1.08999 * 109.47208 * 189.38770 * 3 2 1 29 29 H 1.08997 * 109.47406 * 309.38538 * 3 2 1 30 30 H 1.09001 * 109.47359 * 69.39180 * 3 2 1 31 31 H 1.09001 * 110.70510 * 87.83554 * 6 4 2 32 32 H 1.08992 * 110.85466 * 324.66361 * 6 4 2 33 33 H 1.08996 * 109.89264 * 262.87833 * 7 6 4 34 34 H 1.08995 * 110.02146 * 141.76115 * 7 6 4 35 35 H 1.09001 * 110.03477 * 337.00162 * 11 9 8 36 36 H 1.09004 * 110.03549 * 98.38306 * 11 9 8 37 37 H 1.08999 * 110.03134 * 119.28319 * 12 11 9 38 38 H 1.08999 * 110.03044 * 240.66784 * 12 11 9 39 39 H 0.97003 * 119.99926 * 179.97438 * 18 17 15 40 40 H 1.09001 * 110.75735 * 203.74331 * 23 13 12 41 41 H 1.09002 * 110.75365 * 80.36997 * 23 13 12 42 42 H 1.08996 * 110.38105 * 94.72968 * 24 8 7 43 43 H 1.08995 * 110.37496 * 217.07734 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.6768 -0.3264 2.0827 6 6 3.5417 -0.8729 1.0677 7 6 3.8355 -2.1750 1.8419 8 7 2.6034 -2.9845 1.8187 9 6 2.8550 -4.3097 1.2369 10 1 3.2357 -4.2149 0.2200 11 6 1.5682 -5.1603 1.2545 12 6 1.9985 -6.6021 1.5769 13 6 3.5318 -6.5771 1.7447 14 1 4.0223 -6.8507 0.8105 15 6 3.9563 -7.5056 2.8532 16 1 4.4664 -7.1134 3.7206 17 6 3.6934 -8.8559 2.7601 18 7 3.0718 -9.3335 1.7042 19 14 4.2189 -10.0067 4.1346 20 1 4.8944 -9.2264 5.2023 21 1 3.0233 -10.6844 4.6970 22 1 5.1574 -11.0241 3.5966 23 6 3.8494 -5.1076 2.1170 24 6 1.5747 -2.2542 1.0478 25 1 -0.3632 0.4511 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0722 1.3473 -0.1676 29 1 1.5169 1.9443 -0.7942 30 1 1.7880 1.8402 0.9619 31 1 4.0095 -0.0191 1.5580 32 1 3.8787 -0.9545 0.0344 33 1 4.1062 -1.9412 2.8715 34 1 4.6467 -2.7207 1.3601 35 1 0.8882 -4.7929 2.0231 36 1 1.0832 -5.1240 0.2790 37 1 1.5274 -6.9343 2.5020 38 1 1.7221 -7.2662 0.7580 39 1 2.8871 -10.2835 1.6385 40 1 4.8788 -4.8578 1.8599 41 1 3.6598 -4.9276 3.1752 42 1 1.5719 -2.5858 0.0095 43 1 0.5915 -2.3982 1.4957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:06 Heat of formation + Delta-G solvation = -18.755392 kcal Electronic energy + Delta-G solvation = -19364.494403 eV Core-core repulsion = 16636.066804 eV Total energy + Delta-G solvation = -2728.427599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71987 -38.66937 -36.62721 -34.38924 -31.61240 -30.34995 -29.55116 -28.13523 -27.80594 -25.60523 -24.38941 -22.35449 -21.34715 -20.57568 -20.44758 -18.36720 -17.31522 -17.14635 -16.50750 -16.30255 -15.53175 -15.38197 -15.24885 -14.64787 -14.25114 -14.14335 -14.03373 -13.78403 -13.22476 -13.12635 -13.06029 -12.93112 -12.70398 -12.56540 -12.29605 -12.08425 -11.88058 -11.80750 -11.67771 -11.61498 -11.54398 -11.31697 -10.93540 -10.72170 -10.46696 -9.33388 -9.20490 -8.10311 -6.19758 1.40729 1.42250 1.54157 2.44790 2.75467 3.20369 3.29009 3.56486 3.73742 4.00557 4.05951 4.18899 4.26160 4.33554 4.38588 4.49187 4.52663 4.63105 4.66536 4.76198 4.78437 4.88910 4.91828 4.95450 4.97483 4.99920 5.03478 5.05061 5.09644 5.17406 5.20571 5.28366 5.45144 5.52196 5.68626 5.91478 6.00069 6.01775 6.08119 6.19346 6.27288 6.42799 6.91130 7.47411 8.99028 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051137 B = 0.004245 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.416914 B = 6594.257321 C = 6917.026363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.553 5.553 3 C 0.025 3.975 4 C 0.079 3.921 5 H 0.056 0.944 6 C -0.121 4.121 7 C 0.040 3.960 8 N -0.530 5.530 9 C 0.089 3.911 10 H 0.036 0.964 11 C -0.105 4.105 12 C -0.082 4.082 13 C 0.038 3.962 14 H -0.004 1.004 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.920 5.920 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.090 4.090 24 C 0.056 3.944 25 H 0.029 0.971 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 20.442 -2.682 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.278 5.278 3 C -0.123 4.123 4 C -0.030 4.030 5 H 0.074 0.926 6 C -0.160 4.160 7 C -0.088 4.088 8 N -0.254 5.254 9 C -0.019 4.019 10 H 0.054 0.946 11 C -0.143 4.143 12 C -0.121 4.121 13 C 0.019 3.981 14 H 0.014 0.986 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.128 4.128 24 C -0.072 4.072 25 H 0.048 0.952 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.333 19.977 -2.680 20.429 hybrid contribution 0.188 -0.749 0.425 0.881 sum -3.145 19.228 -2.254 19.613 Atomic orbital electron populations 1.22434 0.86507 1.02510 1.01104 1.62015 1.08809 1.14821 1.42137 1.22419 1.01333 0.87688 1.00832 1.22718 0.95201 0.93106 0.91991 0.92618 1.22744 0.94560 0.97779 1.00915 1.22817 0.91889 0.93114 1.00953 1.63649 1.08540 1.02120 1.51123 1.22519 0.95978 0.88409 0.95023 0.94621 1.22142 0.96708 0.94953 1.00516 1.21794 0.98173 0.93768 0.98386 1.19425 0.92533 0.91590 0.94554 0.98567 1.21556 1.37332 0.92882 1.05015 0.92944 1.25780 0.95248 0.99851 0.97951 1.70112 1.42441 1.13621 1.29803 0.85568 0.77983 0.78826 0.79668 1.19067 1.20657 1.20619 1.22417 0.96549 0.95015 0.98866 1.22938 0.95852 0.92063 0.96339 0.95215 0.90133 0.91723 0.91002 0.90339 0.95249 0.89250 0.90976 0.90272 0.92990 0.91571 0.92430 0.95378 0.95206 0.93171 0.93256 0.92396 0.93610 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.37 127.69 1.20 1.57 16 2 N -0.55 -10.76 4.92 -915.09 -4.50 -15.26 16 3 C 0.03 0.37 9.30 127.69 1.19 1.56 16 4 C 0.08 1.72 2.69 46.30 0.12 1.84 16 5 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 6 C -0.12 -2.55 5.39 31.77 0.17 -2.38 16 7 C 0.04 1.06 6.39 86.65 0.55 1.62 16 8 N -0.53 -16.43 4.99 -854.07 -4.26 -20.69 16 9 C 0.09 3.28 2.11 46.00 0.10 3.38 16 10 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 11 C -0.11 -4.11 5.72 31.32 0.18 -3.93 16 12 C -0.08 -4.07 5.40 31.32 0.17 -3.91 16 13 C 0.04 1.98 2.79 -10.46 -0.03 1.95 16 14 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 15 C -0.53 -30.22 8.40 25.60 0.22 -30.01 16 16 H 0.05 2.95 7.77 -2.91 -0.02 2.92 16 17 C 0.01 0.58 5.33 84.66 0.45 1.03 16 18 N -0.92 -54.95 12.35 21.45 0.26 -54.69 16 19 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 C -0.09 -3.87 5.13 31.90 0.16 -3.71 16 24 C 0.06 1.49 4.41 86.77 0.38 1.87 16 25 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.08 1.11 8.06 -2.39 -0.02 1.09 16 27 H 0.06 1.17 7.16 -2.39 -0.02 1.15 16 28 H 0.07 1.02 7.40 -2.39 -0.02 1.00 16 29 H 0.08 0.96 8.03 -2.39 -0.02 0.94 16 30 H 0.03 0.41 8.13 -2.39 -0.02 0.39 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.45 6.91 -2.39 -0.02 1.44 16 35 H 0.07 2.48 7.99 -2.39 -0.02 2.46 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.03 1.47 7.83 -2.39 -0.02 1.45 16 38 H 0.03 1.56 7.94 -2.39 -0.02 1.54 16 39 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.05 2.00 7.69 -2.39 -0.02 1.98 16 41 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 42 H 0.05 1.31 7.81 -2.39 -0.02 1.29 16 43 H 0.07 1.95 8.01 -2.39 -0.02 1.93 16 Total: -1.00 -62.18 327.76 -0.68 -62.85 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.93 Total: 10.12 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.86 Total: -29.11 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -8.49 Total: -90.64 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -62.18 -0.68 -62.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.096 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds