Wall clock time and date at job start Mon Mar 30 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00511 * 2 1 4 4 C 1.46904 * 110.99707 * 123.95299 * 2 1 3 5 5 H 1.08992 * 110.76751 * 299.83400 * 4 2 1 6 6 C 1.55147 * 110.70344 * 176.63740 * 4 2 1 7 7 C 1.54905 * 101.65042 * 205.96168 * 6 4 2 8 8 N 1.47842 * 104.79538 * 37.07495 * 7 6 4 9 9 C 1.46904 * 110.99888 * 213.63366 * 8 7 6 10 10 H 1.09005 * 110.54006 * 63.44735 * 9 8 7 11 11 C 1.54261 * 110.48774 * 186.06740 * 9 8 7 12 12 C 1.53875 * 106.60017 * 142.28981 * 11 9 8 13 13 C 1.54268 * 106.59896 * 359.97438 * 12 11 9 14 14 H 1.08998 * 110.59666 * 95.12480 * 13 12 11 15 15 C 1.50699 * 110.48749 * 217.71372 * 13 12 11 16 16 H 1.08003 * 119.99688 * 114.77581 * 15 13 12 17 17 C 1.37874 * 120.00062 * 294.77399 * 15 13 12 18 18 N 1.31519 * 119.99870 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00081 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46941 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47222 * 119.99692 * 19 17 15 22 22 H 1.48496 * 109.47545 * 240.00070 * 19 17 15 23 23 C 1.54893 * 110.48379 * 300.84248 * 9 8 7 24 24 C 1.47444 * 108.56628 * 335.89826 * 8 7 6 25 25 H 1.09003 * 109.47193 * 296.05201 * 1 2 3 26 26 H 1.09002 * 109.46801 * 56.04499 * 1 2 3 27 27 H 1.08998 * 109.47352 * 176.04863 * 1 2 3 28 28 H 1.08998 * 109.47467 * 189.46721 * 3 2 1 29 29 H 1.09002 * 109.46797 * 309.46199 * 3 2 1 30 30 H 1.09000 * 109.46937 * 69.45521 * 3 2 1 31 31 H 1.08997 * 110.99140 * 324.05578 * 6 4 2 32 32 H 1.09003 * 110.99044 * 87.83198 * 6 4 2 33 33 H 1.08995 * 110.37673 * 278.24055 * 7 6 4 34 34 H 1.09010 * 110.37069 * 155.90007 * 7 6 4 35 35 H 1.09000 * 110.03023 * 261.57199 * 11 9 8 36 36 H 1.08996 * 110.03524 * 23.00407 * 11 9 8 37 37 H 1.09004 * 110.03237 * 240.71756 * 12 11 9 38 38 H 1.09000 * 110.07850 * 119.30450 * 12 11 9 39 39 H 0.97002 * 119.99507 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.75674 * 321.68957 * 23 9 8 41 41 H 1.08998 * 110.75831 * 85.06629 * 23 9 8 42 42 H 1.08998 * 109.88514 * 120.40246 * 24 8 7 43 43 H 1.09003 * 109.88512 * 241.58369 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1377 5 1 1.6605 -0.3357 2.0814 6 6 3.5445 -0.8327 1.0843 7 6 3.8282 -2.1421 1.8618 8 7 2.7332 -3.0564 1.4737 9 6 2.3648 -3.9395 2.5884 10 1 1.9736 -3.3583 3.4235 11 6 1.3303 -4.9871 2.1281 12 6 1.6843 -6.3003 2.8478 13 6 2.9221 -6.0050 3.7199 14 1 2.6233 -5.7579 4.7386 15 6 3.8618 -7.1831 3.7182 16 1 4.8434 -7.0903 3.2774 17 6 3.4684 -8.3795 4.2794 18 7 2.2733 -8.4923 4.8166 19 14 4.6329 -9.8401 4.2767 20 1 5.9069 -9.4561 3.6173 21 1 4.9063 -10.2578 5.6752 22 1 4.0116 -10.9672 3.5359 23 6 3.5842 -4.7820 3.0384 24 6 1.5799 -2.2487 1.0361 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0720 1.3473 -0.1690 29 1 1.5160 1.9447 -0.7934 30 1 1.7891 1.8398 0.9623 31 1 3.8969 -0.9052 0.0554 32 1 3.9898 0.0254 1.5877 33 1 3.8062 -1.9580 2.9358 34 1 4.7919 -2.5574 1.5667 35 1 0.3261 -4.6677 2.4067 36 1 1.3928 -5.1244 1.0486 37 1 1.9188 -7.0749 2.1175 38 1 0.8523 -6.6190 3.4756 39 1 1.9964 -9.3341 5.2111 40 1 4.1770 -5.0934 2.1783 41 1 4.1956 -4.2271 3.7499 42 1 1.3262 -2.4929 0.0046 43 1 0.7256 -2.4398 1.6856 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:09 Heat of formation + Delta-G solvation = -0.080525 kcal Electronic energy + Delta-G solvation = -19355.766086 eV Core-core repulsion = 16628.148291 eV Total energy + Delta-G solvation = -2727.617796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.56651 -37.32060 -35.30673 -32.41740 -30.28897 -29.08847 -28.04855 -27.19656 -26.22034 -23.70949 -23.41988 -21.11233 -20.26872 -19.11380 -18.65615 -16.50841 -16.36724 -15.68724 -14.98047 -14.64776 -14.64194 -14.36095 -13.78925 -13.11974 -13.06047 -12.82754 -12.53966 -12.24611 -12.21297 -12.06721 -11.90376 -11.38250 -11.15633 -10.99739 -10.90410 -10.79216 -10.70482 -10.41629 -10.04151 -10.00584 -9.89678 -9.45664 -9.01853 -8.64324 -8.55409 -8.31514 -7.91304 -5.94466 -3.96175 3.34084 3.42053 3.46467 3.73027 4.30233 4.49533 4.53638 4.85815 4.98857 5.08875 5.15698 5.29529 5.36037 5.37636 5.43633 5.53689 5.63398 5.64273 5.70311 5.74126 5.78157 5.82951 6.03053 6.08376 6.11112 6.20029 6.37069 6.58610 6.66695 6.83682 6.87395 6.89295 6.94848 7.08256 7.26937 7.33643 7.45886 7.64377 7.79630 7.98458 8.09904 8.54813 9.07167 9.67427 11.15632 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051400 B = 0.004238 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.620918 B = 6605.513448 C = 6958.804217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.024 3.976 4 C 0.059 3.941 5 H 0.044 0.956 6 C -0.120 4.120 7 C 0.046 3.954 8 N -0.517 5.517 9 C 0.072 3.928 10 H 0.034 0.966 11 C -0.116 4.116 12 C -0.095 4.095 13 C 0.049 3.951 14 H 0.027 0.973 15 C -0.509 4.509 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.104 4.104 24 C 0.054 3.946 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.258 0.742 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 17.303 -7.560 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.124 4.124 4 C -0.050 4.050 5 H 0.062 0.938 6 C -0.158 4.158 7 C -0.082 4.082 8 N -0.241 5.241 9 C -0.036 4.036 10 H 0.052 0.948 11 C -0.154 4.154 12 C -0.134 4.134 13 C 0.030 3.970 14 H 0.046 0.954 15 C -0.547 4.547 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.142 4.142 24 C -0.075 4.075 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.023 16.614 -8.302 18.683 hybrid contribution -0.133 0.092 1.539 1.548 sum -2.156 16.706 -6.763 18.152 Atomic orbital electron populations 1.22417 0.87394 1.02651 1.00181 1.62067 1.07808 1.13512 1.42543 1.22382 1.01206 0.88823 0.99980 1.22990 0.95842 0.95001 0.91163 0.93777 1.22777 0.93837 0.97403 1.01829 1.22945 0.96527 0.91089 0.97623 1.63759 1.06163 1.18275 1.35931 1.22834 0.97902 0.93106 0.89709 0.94814 1.22274 0.95869 0.96732 1.00484 1.22052 0.99706 0.93429 0.98187 1.19418 0.92268 0.91343 0.93997 0.95446 1.21205 1.00517 0.95702 1.37285 0.92607 1.24987 0.95114 0.98672 0.95306 1.69989 1.18484 1.25518 1.39024 0.86601 0.81317 0.82929 0.77543 1.19782 1.21191 1.21113 1.22619 0.95277 0.96891 0.99409 1.22818 0.93420 0.89453 1.01795 0.95877 0.91433 0.90916 0.91140 0.91571 0.95890 0.89735 0.91553 0.93791 0.90017 0.94179 0.92117 0.92942 0.92995 0.93261 0.91549 0.94006 0.89850 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.35 60.06 0.56 0.77 16 2 N -0.54 -5.86 4.84 -240.97 -1.17 -7.02 16 3 C 0.02 0.22 9.27 60.06 0.56 0.77 16 4 C 0.06 0.72 2.63 -65.89 -0.17 0.55 16 5 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 6 C -0.12 -1.41 5.41 -24.59 -0.13 -1.54 16 7 C 0.05 0.65 5.91 -2.30 -0.01 0.64 16 8 N -0.52 -8.40 4.99 -221.32 -1.10 -9.51 16 9 C 0.07 1.35 2.10 -66.05 -0.14 1.21 16 10 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 11 C -0.12 -2.26 5.62 -25.62 -0.14 -2.41 16 12 C -0.10 -2.27 5.60 -25.61 -0.14 -2.41 16 13 C 0.05 1.23 2.72 -90.12 -0.25 0.99 16 14 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.51 -14.20 8.36 -34.44 -0.29 -14.49 16 16 H 0.06 1.55 7.77 -52.48 -0.41 1.14 16 17 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 18 N -0.89 -26.04 12.63 55.43 0.70 -25.34 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.10 -2.21 5.06 -24.75 -0.13 -2.33 16 24 C 0.05 0.75 5.01 -2.84 -0.01 0.74 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 27 H 0.07 0.71 7.08 -51.93 -0.37 0.35 16 28 H 0.07 0.60 7.34 -51.93 -0.38 0.22 16 29 H 0.07 0.50 8.02 -51.93 -0.42 0.09 16 30 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 34 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.05 1.33 7.83 -51.93 -0.41 0.93 16 38 H 0.05 1.31 8.06 -51.93 -0.42 0.89 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.07 1.46 8.05 -51.93 -0.42 1.05 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 43 H 0.05 0.72 7.26 -51.93 -0.38 0.35 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -28.89 328.45 -10.23 -39.12 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -8.20 Total: -2.88 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -0.40 Total: -15.91 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: -1.57 Total: -41.87 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.89 -10.23 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.038 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds