Wall clock time and date at job start Mon Mar 30 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00511 * 2 1 4 4 C 1.46904 * 110.99707 * 123.95299 * 2 1 3 5 5 H 1.08992 * 110.76751 * 299.83400 * 4 2 1 6 6 C 1.55147 * 110.70344 * 176.63740 * 4 2 1 7 7 C 1.54905 * 101.65042 * 205.96168 * 6 4 2 8 8 N 1.47842 * 104.79538 * 37.07495 * 7 6 4 9 9 C 1.46904 * 110.99888 * 213.63366 * 8 7 6 10 10 H 1.09005 * 110.54006 * 63.44735 * 9 8 7 11 11 C 1.54261 * 110.48774 * 186.06740 * 9 8 7 12 12 C 1.53875 * 106.60017 * 142.28981 * 11 9 8 13 13 C 1.54268 * 106.59896 * 359.97438 * 12 11 9 14 14 H 1.08998 * 110.59666 * 95.12480 * 13 12 11 15 15 C 1.50699 * 110.48749 * 217.71372 * 13 12 11 16 16 H 1.08003 * 119.99688 * 114.77581 * 15 13 12 17 17 C 1.37874 * 120.00062 * 294.77399 * 15 13 12 18 18 N 1.31519 * 119.99870 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00081 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46941 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47222 * 119.99692 * 19 17 15 22 22 H 1.48496 * 109.47545 * 240.00070 * 19 17 15 23 23 C 1.54893 * 110.48379 * 300.84248 * 9 8 7 24 24 C 1.47444 * 108.56628 * 335.89826 * 8 7 6 25 25 H 1.09003 * 109.47193 * 296.05201 * 1 2 3 26 26 H 1.09002 * 109.46801 * 56.04499 * 1 2 3 27 27 H 1.08998 * 109.47352 * 176.04863 * 1 2 3 28 28 H 1.08998 * 109.47467 * 189.46721 * 3 2 1 29 29 H 1.09002 * 109.46797 * 309.46199 * 3 2 1 30 30 H 1.09000 * 109.46937 * 69.45521 * 3 2 1 31 31 H 1.08997 * 110.99140 * 324.05578 * 6 4 2 32 32 H 1.09003 * 110.99044 * 87.83198 * 6 4 2 33 33 H 1.08995 * 110.37673 * 278.24055 * 7 6 4 34 34 H 1.09010 * 110.37069 * 155.90007 * 7 6 4 35 35 H 1.09000 * 110.03023 * 261.57199 * 11 9 8 36 36 H 1.08996 * 110.03524 * 23.00407 * 11 9 8 37 37 H 1.09004 * 110.03237 * 240.71756 * 12 11 9 38 38 H 1.09000 * 110.07850 * 119.30450 * 12 11 9 39 39 H 0.97002 * 119.99507 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.75674 * 321.68957 * 23 9 8 41 41 H 1.08998 * 110.75831 * 85.06629 * 23 9 8 42 42 H 1.08998 * 109.88514 * 120.40246 * 24 8 7 43 43 H 1.09003 * 109.88512 * 241.58369 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1377 5 1 1.6605 -0.3357 2.0814 6 6 3.5445 -0.8327 1.0843 7 6 3.8282 -2.1421 1.8618 8 7 2.7332 -3.0564 1.4737 9 6 2.3648 -3.9395 2.5884 10 1 1.9736 -3.3583 3.4235 11 6 1.3303 -4.9871 2.1281 12 6 1.6843 -6.3003 2.8478 13 6 2.9221 -6.0050 3.7199 14 1 2.6233 -5.7579 4.7386 15 6 3.8618 -7.1831 3.7182 16 1 4.8434 -7.0903 3.2774 17 6 3.4684 -8.3795 4.2794 18 7 2.2733 -8.4923 4.8166 19 14 4.6329 -9.8401 4.2767 20 1 5.9069 -9.4561 3.6173 21 1 4.9063 -10.2578 5.6752 22 1 4.0116 -10.9672 3.5359 23 6 3.5842 -4.7820 3.0384 24 6 1.5799 -2.2487 1.0361 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0720 1.3473 -0.1690 29 1 1.5160 1.9447 -0.7934 30 1 1.7891 1.8398 0.9623 31 1 3.8969 -0.9052 0.0554 32 1 3.9898 0.0254 1.5877 33 1 3.8062 -1.9580 2.9358 34 1 4.7919 -2.5574 1.5667 35 1 0.3261 -4.6677 2.4067 36 1 1.3928 -5.1244 1.0486 37 1 1.9188 -7.0749 2.1175 38 1 0.8523 -6.6190 3.4756 39 1 1.9964 -9.3341 5.2111 40 1 4.1770 -5.0934 2.1783 41 1 4.1956 -4.2271 3.7499 42 1 1.3262 -2.4929 0.0046 43 1 0.7256 -2.4398 1.6856 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:09 Heat of formation + Delta-G solvation = -18.418665 kcal Electronic energy + Delta-G solvation = -19356.561288 eV Core-core repulsion = 16628.148291 eV Total energy + Delta-G solvation = -2728.412997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74020 -38.68407 -36.60625 -34.39484 -31.64663 -30.32501 -29.56580 -28.13114 -27.81775 -25.59474 -24.35616 -22.35436 -21.38870 -20.79548 -20.26691 -18.36769 -17.37340 -17.10307 -16.55456 -16.35939 -15.57644 -15.53447 -14.90539 -14.69647 -14.29718 -14.19059 -13.84972 -13.66238 -13.43991 -13.18097 -13.02995 -12.91384 -12.66820 -12.55181 -12.28431 -12.08883 -11.86321 -11.80642 -11.69000 -11.63678 -11.59269 -11.37241 -10.92945 -10.73132 -10.47091 -9.37409 -9.16092 -8.11129 -6.20122 1.40553 1.42212 1.54091 2.44647 2.86720 3.12468 3.19934 3.53320 3.80583 4.01503 4.04139 4.14894 4.27514 4.31772 4.40854 4.46822 4.49628 4.55806 4.66762 4.73858 4.78745 4.86965 4.93580 4.96239 4.99378 5.00604 5.03311 5.04804 5.09319 5.16846 5.21631 5.25485 5.44020 5.51595 5.67374 5.90050 5.99359 6.08586 6.09535 6.14530 6.27434 6.42667 6.90954 7.47092 8.98640 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051400 B = 0.004238 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.620918 B = 6605.513448 C = 6958.804217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.066 3.934 5 H 0.043 0.957 6 C -0.108 4.108 7 C 0.042 3.958 8 N -0.528 5.528 9 C 0.087 3.913 10 H 0.036 0.964 11 C -0.104 4.104 12 C -0.086 4.086 13 C 0.039 3.961 14 H -0.002 1.002 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.922 5.922 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.092 4.092 24 C 0.055 3.945 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 18.848 -8.513 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.044 4.044 5 H 0.061 0.939 6 C -0.146 4.146 7 C -0.086 4.086 8 N -0.253 5.253 9 C -0.021 4.021 10 H 0.054 0.946 11 C -0.142 4.142 12 C -0.125 4.125 13 C 0.020 3.980 14 H 0.016 0.984 15 C -0.567 4.567 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.130 4.130 24 C -0.073 4.073 25 H 0.043 0.957 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.559 18.180 -9.266 20.465 hybrid contribution -0.289 -0.372 1.832 1.892 sum -1.848 17.808 -7.434 19.386 Atomic orbital electron populations 1.22450 0.86690 1.02574 1.00971 1.62068 1.08598 1.14684 1.41780 1.22438 1.01537 0.87746 1.00668 1.22854 0.96021 0.93767 0.91709 0.93875 1.22704 0.93643 0.96710 1.01559 1.23015 0.95652 0.91945 0.97986 1.63674 1.07548 1.19424 1.34631 1.22541 0.95905 0.93075 0.90619 0.94586 1.22130 0.97207 0.94686 1.00172 1.21844 0.98270 0.95101 0.97276 1.19417 0.92974 0.92573 0.93074 0.98401 1.21555 1.00842 0.96949 1.37314 0.92927 1.25781 0.96674 1.01448 0.94958 1.70110 1.20071 1.26247 1.39694 0.85569 0.79402 0.79379 0.77709 1.19038 1.20612 1.20672 1.22406 0.96080 0.95703 0.98764 1.22786 0.92476 0.90731 1.01272 0.95660 0.89946 0.91590 0.90746 0.90254 0.95593 0.89817 0.89422 0.93913 0.90252 0.92377 0.91541 0.95267 0.95263 0.93168 0.92403 0.93235 0.90191 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.35 127.69 1.19 1.55 16 2 N -0.55 -10.58 4.84 -916.31 -4.43 -15.01 16 3 C 0.02 0.35 9.27 127.69 1.18 1.54 16 4 C 0.07 1.45 2.63 46.09 0.12 1.57 16 5 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 6 C -0.11 -2.25 5.41 31.98 0.17 -2.07 16 7 C 0.04 1.11 5.91 86.77 0.51 1.62 16 8 N -0.53 -16.41 4.99 -854.11 -4.26 -20.67 16 9 C 0.09 3.17 2.10 45.99 0.10 3.27 16 10 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 11 C -0.10 -4.03 5.62 31.32 0.18 -3.85 16 12 C -0.09 -4.23 5.60 31.32 0.18 -4.05 16 13 C 0.04 2.00 2.72 -10.47 -0.03 1.98 16 14 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 15 C -0.53 -30.09 8.36 25.60 0.21 -29.87 16 16 H 0.05 2.95 7.77 -2.91 -0.02 2.93 16 17 C 0.01 0.56 5.35 84.65 0.45 1.01 16 18 N -0.92 -55.05 12.63 21.45 0.27 -54.78 16 19 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 C -0.09 -3.90 5.06 31.88 0.16 -3.73 16 24 C 0.06 1.47 5.01 86.64 0.43 1.90 16 25 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.08 1.12 8.06 -2.39 -0.02 1.10 16 27 H 0.07 1.18 7.08 -2.39 -0.02 1.17 16 28 H 0.07 1.04 7.34 -2.39 -0.02 1.02 16 29 H 0.08 0.96 8.02 -2.39 -0.02 0.94 16 30 H 0.03 0.37 8.13 -2.39 -0.02 0.35 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.15 7.81 -2.39 -0.02 1.13 16 34 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 36 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 37 H 0.03 1.52 7.83 -2.39 -0.02 1.50 16 38 H 0.03 1.51 8.06 -2.39 -0.02 1.49 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.06 2.55 8.05 -2.39 -0.02 2.53 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 2.19 7.76 -2.39 -0.02 2.17 16 43 H 0.05 1.28 7.26 -2.39 -0.02 1.27 16 Total: -1.00 -62.15 328.45 -0.60 -62.76 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.93 Total: 10.10 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 4.87 Total: -29.16 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -8.42 Total: -90.46 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -62.15 -0.60 -62.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.337 kcal (2) G-P(sol) polarization free energy of solvation -62.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds