Wall clock time and date at job start Mon Mar 30 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99772 * 2 1 4 4 C 1.46897 * 111.00451 * 123.95155 * 2 1 3 5 5 H 1.09000 * 110.62717 * 300.05987 * 4 2 1 6 6 C 1.55133 * 110.70780 * 176.75740 * 4 2 1 7 7 C 1.54911 * 101.65014 * 205.96573 * 6 4 2 8 8 N 1.47837 * 104.79740 * 37.07166 * 7 6 4 9 9 C 1.46902 * 111.00110 * 213.63046 * 8 7 6 10 10 H 1.08999 * 110.53220 * 62.57600 * 9 8 7 11 11 C 1.54882 * 110.48885 * 299.96700 * 9 8 7 12 12 C 1.54969 * 102.77624 * 203.40240 * 11 9 8 13 13 C 1.54270 * 104.15996 * 37.88702 * 12 11 9 14 14 H 1.08997 * 110.03094 * 95.75091 * 13 12 11 15 15 C 1.50697 * 110.02963 * 217.13764 * 13 12 11 16 16 H 1.07996 * 120.00056 * 117.91066 * 15 13 12 17 17 C 1.37879 * 119.99891 * 298.18046 * 15 13 12 18 18 N 1.31512 * 119.99946 * 359.72634 * 17 15 13 19 19 Si 1.86806 * 119.99878 * 179.72859 * 17 15 13 20 20 H 1.48499 * 109.47286 * 59.99923 * 19 17 15 21 21 H 1.48498 * 109.46870 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46789 * 300.00010 * 19 17 15 23 23 C 1.53871 * 106.63900 * 336.44630 * 13 12 11 24 24 C 1.47436 * 108.56701 * 335.90454 * 8 7 6 25 25 H 1.09003 * 109.46977 * 296.04783 * 1 2 3 26 26 H 1.08999 * 109.47134 * 56.04246 * 1 2 3 27 27 H 1.08999 * 109.46796 * 176.04870 * 1 2 3 28 28 H 1.09003 * 109.46595 * 189.45676 * 3 2 1 29 29 H 1.08998 * 109.47078 * 309.45609 * 3 2 1 30 30 H 1.08995 * 109.47169 * 69.45597 * 3 2 1 31 31 H 1.08991 * 110.99319 * 324.05712 * 6 4 2 32 32 H 1.08999 * 110.98999 * 87.87501 * 6 4 2 33 33 H 1.08998 * 110.37239 * 278.23948 * 7 6 4 34 34 H 1.09003 * 110.37144 * 155.90140 * 7 6 4 35 35 H 1.09001 * 110.75368 * 321.68478 * 11 9 8 36 36 H 1.09001 * 110.76423 * 84.87717 * 11 9 8 37 37 H 1.08991 * 110.47690 * 279.22920 * 12 11 9 38 38 H 1.09007 * 110.52903 * 156.56101 * 12 11 9 39 39 H 0.97001 * 119.99545 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.03545 * 119.26386 * 23 13 12 41 41 H 1.09003 * 110.03079 * 240.64604 * 23 13 12 42 42 H 1.09005 * 109.89049 * 120.39975 * 24 8 7 43 43 H 1.09009 * 109.88941 * 241.57953 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1376 5 1 1.6562 -0.3360 2.0800 6 6 3.5447 -0.8300 1.0857 7 6 3.8298 -2.1396 1.8625 8 7 2.7367 -3.0554 1.4727 9 6 2.3686 -3.9400 2.5863 10 1 1.9901 -3.3588 3.4271 11 6 3.5831 -4.7966 3.0224 12 6 2.9144 -6.0172 3.7040 13 6 1.6667 -6.2950 2.8404 14 1 1.8865 -7.0686 2.1047 15 6 0.5187 -6.7270 3.7159 16 1 -0.3811 -6.1315 3.7593 17 6 0.6195 -7.8796 4.4658 18 7 1.7152 -8.6049 4.4129 19 14 -0.8006 -8.4111 5.5570 20 1 -2.0102 -8.6297 4.7238 21 1 -0.4441 -9.6730 6.2537 22 1 -1.0761 -7.3525 6.5613 23 6 1.3199 -4.9751 2.1297 24 6 1.5827 -2.2492 1.0345 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0720 1.3474 -0.1689 29 1 1.5159 1.9447 -0.7935 30 1 1.7890 1.8399 0.9623 31 1 3.8984 -0.9012 0.0573 32 1 3.9881 0.0281 1.5909 33 1 3.8064 -1.9563 2.9368 34 1 4.7945 -2.5530 1.5682 35 1 4.1657 -5.1100 2.1561 36 1 4.2077 -4.2501 3.7289 37 1 2.6244 -5.7719 4.7256 38 1 3.5852 -6.8764 3.6926 39 1 1.7862 -9.4156 4.9408 40 1 1.3722 -5.1079 1.0490 41 1 0.3209 -4.6474 2.4174 42 1 1.3304 -2.4932 0.0025 43 1 0.7279 -2.4422 1.6829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:12 Heat of formation + Delta-G solvation = 0.665881 kcal Electronic energy + Delta-G solvation = -19428.506088 eV Core-core repulsion = 16700.920658 eV Total energy + Delta-G solvation = -2727.585429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.54919 -37.30969 -35.31273 -32.38629 -30.28211 -29.12684 -27.90314 -27.29840 -26.05694 -24.03204 -23.08704 -21.19883 -20.18752 -19.27712 -18.44579 -16.53297 -16.24637 -16.10242 -14.81576 -14.68792 -14.44171 -14.27112 -13.72380 -13.26972 -13.00607 -12.80709 -12.51018 -12.30143 -12.14095 -12.03075 -11.87441 -11.36303 -11.11866 -10.98469 -10.90706 -10.81472 -10.63160 -10.49869 -10.12212 -9.88916 -9.78368 -9.48932 -9.11195 -8.64314 -8.52489 -8.30535 -7.89703 -5.94218 -3.96515 3.34718 3.39503 3.41878 3.75795 4.32028 4.48725 4.54592 4.86771 5.01414 5.11117 5.18922 5.32081 5.37077 5.39231 5.43295 5.56586 5.64730 5.67733 5.71923 5.79108 5.80640 5.83696 6.05190 6.06870 6.14983 6.18796 6.43056 6.63946 6.68493 6.79303 6.86394 6.90916 6.97407 7.12130 7.30740 7.36047 7.44740 7.66495 7.81976 7.96514 8.11369 8.54535 9.06516 9.66626 11.15228 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.004690 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.954242 B = 5968.413409 C = 6550.655309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.025 3.975 4 C 0.060 3.940 5 H 0.044 0.956 6 C -0.120 4.120 7 C 0.045 3.955 8 N -0.518 5.518 9 C 0.076 3.924 10 H 0.036 0.964 11 C -0.119 4.119 12 C -0.090 4.090 13 C 0.046 3.954 14 H 0.028 0.972 15 C -0.513 4.513 16 H 0.052 0.948 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.104 4.104 24 C 0.054 3.946 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.259 0.741 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 17.189 -6.380 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.124 4.124 4 C -0.050 4.050 5 H 0.062 0.938 6 C -0.158 4.158 7 C -0.083 4.083 8 N -0.243 5.243 9 C -0.032 4.032 10 H 0.054 0.946 11 C -0.157 4.157 12 C -0.128 4.128 13 C 0.027 3.973 14 H 0.046 0.954 15 C -0.551 4.551 16 H 0.071 0.929 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.715 3.285 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.142 4.142 24 C -0.074 4.074 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.632 16.457 -7.136 18.130 hybrid contribution -1.384 0.622 2.193 2.667 sum 1.248 17.079 -4.943 17.824 Atomic orbital electron populations 1.22425 0.87301 1.02777 1.00181 1.62065 1.07885 1.13436 1.42551 1.22380 1.01138 0.88890 0.99975 1.22993 0.95695 0.95099 0.91192 0.93779 1.22764 0.93966 0.97307 1.01765 1.22951 0.96532 0.91285 0.97539 1.63764 1.06360 1.18206 1.35956 1.22790 0.97213 0.93253 0.89903 0.94580 1.22660 0.95983 0.97716 0.99351 1.22241 0.97826 0.94116 0.98650 1.19200 0.93368 0.90867 0.93829 0.95416 1.21276 1.00721 1.07734 1.25366 0.92942 1.24981 0.95577 0.96526 0.96921 1.69965 1.26321 1.15432 1.41088 0.86746 0.83032 0.77844 0.80872 1.20348 1.21364 1.20443 1.22314 0.96152 0.96307 0.99380 1.22808 0.93430 0.89240 1.01952 0.95847 0.91435 0.90799 0.91203 0.91574 0.95915 0.89738 0.91616 0.93933 0.90253 0.91834 0.93952 0.93187 0.92426 0.93125 0.93014 0.93335 0.89781 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.36 60.07 0.56 0.78 16 2 N -0.54 -6.04 4.84 -240.97 -1.17 -7.21 16 3 C 0.02 0.22 9.27 60.07 0.56 0.78 16 4 C 0.06 0.74 2.63 -65.89 -0.17 0.57 16 5 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 6 C -0.12 -1.39 5.40 -24.59 -0.13 -1.52 16 7 C 0.05 0.62 5.94 -2.30 -0.01 0.60 16 8 N -0.52 -8.45 4.99 -221.32 -1.10 -9.56 16 9 C 0.08 1.44 2.10 -66.06 -0.14 1.30 16 10 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.12 -2.32 5.71 -24.70 -0.14 -2.46 16 12 C -0.09 -2.13 5.40 -25.03 -0.14 -2.27 16 13 C 0.05 1.17 2.83 -90.66 -0.26 0.92 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.51 -14.27 8.37 -34.44 -0.29 -14.56 16 16 H 0.05 1.44 7.33 -52.49 -0.38 1.06 16 17 C 0.06 1.72 5.32 -17.82 -0.09 1.63 16 18 N -0.89 -25.90 12.36 55.43 0.69 -25.21 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.10 -2.22 5.21 -25.61 -0.13 -2.36 16 24 C 0.05 0.79 5.00 -2.84 -0.01 0.78 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 27 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 28 H 0.07 0.60 7.34 -51.93 -0.38 0.22 16 29 H 0.07 0.52 8.02 -51.93 -0.42 0.10 16 30 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.59 7.81 -51.93 -0.41 0.18 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 1.26 7.85 -51.93 -0.41 0.85 16 38 H 0.06 1.45 7.94 -51.93 -0.41 1.04 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 41 H 0.05 1.05 7.32 -51.93 -0.38 0.67 16 42 H 0.08 1.28 7.76 -51.93 -0.40 0.87 16 43 H 0.05 0.83 7.21 -51.92 -0.37 0.46 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -28.72 327.07 -10.21 -38.93 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -8.13 Total: -2.58 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.40 Total: -15.82 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -1.58 Total: -41.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.72 -10.21 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.596 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds