Wall clock time and date at job start Mon Mar 30 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99772 * 2 1 4 4 C 1.46897 * 111.00451 * 123.95155 * 2 1 3 5 5 H 1.09000 * 110.62717 * 300.05987 * 4 2 1 6 6 C 1.55133 * 110.70780 * 176.75740 * 4 2 1 7 7 C 1.54911 * 101.65014 * 205.96573 * 6 4 2 8 8 N 1.47837 * 104.79740 * 37.07166 * 7 6 4 9 9 C 1.46902 * 111.00110 * 213.63046 * 8 7 6 10 10 H 1.08999 * 110.53220 * 62.57600 * 9 8 7 11 11 C 1.54882 * 110.48885 * 299.96700 * 9 8 7 12 12 C 1.54969 * 102.77624 * 203.40240 * 11 9 8 13 13 C 1.54270 * 104.15996 * 37.88702 * 12 11 9 14 14 H 1.08997 * 110.03094 * 95.75091 * 13 12 11 15 15 C 1.50697 * 110.02963 * 217.13764 * 13 12 11 16 16 H 1.07996 * 120.00056 * 117.91066 * 15 13 12 17 17 C 1.37879 * 119.99891 * 298.18046 * 15 13 12 18 18 N 1.31512 * 119.99946 * 359.72634 * 17 15 13 19 19 Si 1.86806 * 119.99878 * 179.72859 * 17 15 13 20 20 H 1.48499 * 109.47286 * 59.99923 * 19 17 15 21 21 H 1.48498 * 109.46870 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46789 * 300.00010 * 19 17 15 23 23 C 1.53871 * 106.63900 * 336.44630 * 13 12 11 24 24 C 1.47436 * 108.56701 * 335.90454 * 8 7 6 25 25 H 1.09003 * 109.46977 * 296.04783 * 1 2 3 26 26 H 1.08999 * 109.47134 * 56.04246 * 1 2 3 27 27 H 1.08999 * 109.46796 * 176.04870 * 1 2 3 28 28 H 1.09003 * 109.46595 * 189.45676 * 3 2 1 29 29 H 1.08998 * 109.47078 * 309.45609 * 3 2 1 30 30 H 1.08995 * 109.47169 * 69.45597 * 3 2 1 31 31 H 1.08991 * 110.99319 * 324.05712 * 6 4 2 32 32 H 1.08999 * 110.98999 * 87.87501 * 6 4 2 33 33 H 1.08998 * 110.37239 * 278.23948 * 7 6 4 34 34 H 1.09003 * 110.37144 * 155.90140 * 7 6 4 35 35 H 1.09001 * 110.75368 * 321.68478 * 11 9 8 36 36 H 1.09001 * 110.76423 * 84.87717 * 11 9 8 37 37 H 1.08991 * 110.47690 * 279.22920 * 12 11 9 38 38 H 1.09007 * 110.52903 * 156.56101 * 12 11 9 39 39 H 0.97001 * 119.99545 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.03545 * 119.26386 * 23 13 12 41 41 H 1.09003 * 110.03079 * 240.64604 * 23 13 12 42 42 H 1.09005 * 109.89049 * 120.39975 * 24 8 7 43 43 H 1.09009 * 109.88941 * 241.57953 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1376 5 1 1.6562 -0.3360 2.0800 6 6 3.5447 -0.8300 1.0857 7 6 3.8298 -2.1396 1.8625 8 7 2.7367 -3.0554 1.4727 9 6 2.3686 -3.9400 2.5863 10 1 1.9901 -3.3588 3.4271 11 6 3.5831 -4.7966 3.0224 12 6 2.9144 -6.0172 3.7040 13 6 1.6667 -6.2950 2.8404 14 1 1.8865 -7.0686 2.1047 15 6 0.5187 -6.7270 3.7159 16 1 -0.3811 -6.1315 3.7593 17 6 0.6195 -7.8796 4.4658 18 7 1.7152 -8.6049 4.4129 19 14 -0.8006 -8.4111 5.5570 20 1 -2.0102 -8.6297 4.7238 21 1 -0.4441 -9.6730 6.2537 22 1 -1.0761 -7.3525 6.5613 23 6 1.3199 -4.9751 2.1297 24 6 1.5827 -2.2492 1.0345 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0720 1.3474 -0.1689 29 1 1.5159 1.9447 -0.7935 30 1 1.7890 1.8399 0.9623 31 1 3.8984 -0.9012 0.0573 32 1 3.9881 0.0281 1.5909 33 1 3.8064 -1.9563 2.9368 34 1 4.7945 -2.5530 1.5682 35 1 4.1657 -5.1100 2.1561 36 1 4.2077 -4.2501 3.7289 37 1 2.6244 -5.7719 4.7256 38 1 3.5852 -6.8764 3.6926 39 1 1.7862 -9.4156 4.9408 40 1 1.3722 -5.1079 1.0490 41 1 0.3209 -4.6474 2.4174 42 1 1.3304 -2.4932 0.0025 43 1 0.7279 -2.4422 1.6829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:12 Heat of formation + Delta-G solvation = -17.596837 kcal Electronic energy + Delta-G solvation = -19429.298018 eV Core-core repulsion = 16700.920658 eV Total energy + Delta-G solvation = -2728.377360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74116 -38.69828 -36.62638 -34.36293 -31.61036 -30.50396 -29.30511 -28.37557 -27.60343 -25.73476 -24.24341 -22.42283 -21.32813 -20.89433 -20.12370 -18.52291 -17.39529 -17.31011 -16.50472 -15.92586 -15.72581 -15.49559 -14.86660 -14.76663 -14.39878 -14.21515 -13.81887 -13.56174 -13.49371 -13.16162 -12.97603 -12.87750 -12.66180 -12.60118 -12.32381 -12.07487 -11.90070 -11.82551 -11.69277 -11.58590 -11.45591 -11.41418 -11.04935 -10.74009 -10.45189 -9.38120 -9.16489 -8.10570 -6.20455 1.40539 1.41950 1.49635 2.43624 2.86038 3.12409 3.19958 3.53351 3.81555 3.99779 4.04699 4.14299 4.26823 4.37375 4.42453 4.45872 4.49491 4.57237 4.67734 4.72964 4.79389 4.89711 4.93689 4.95686 4.98272 5.01179 5.01966 5.04391 5.05700 5.21310 5.22435 5.27797 5.43879 5.52829 5.65566 5.93470 5.97196 6.07318 6.09625 6.16609 6.24570 6.42177 6.90844 7.46359 8.98181 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.004690 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.954242 B = 5968.413409 C = 6550.655309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.066 3.934 5 H 0.042 0.958 6 C -0.108 4.108 7 C 0.041 3.959 8 N -0.528 5.528 9 C 0.091 3.909 10 H 0.033 0.967 11 C -0.104 4.104 12 C -0.081 4.081 13 C 0.037 3.963 14 H -0.007 1.007 15 C -0.533 4.533 16 H 0.051 0.949 17 C 0.011 3.989 18 N -0.919 5.919 19 Si 0.952 3.048 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.093 4.093 24 C 0.055 3.945 25 H 0.024 0.976 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 19.319 -6.441 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.043 4.043 5 H 0.060 0.940 6 C -0.146 4.146 7 C -0.087 4.087 8 N -0.253 5.253 9 C -0.018 4.018 10 H 0.051 0.949 11 C -0.142 4.142 12 C -0.120 4.120 13 C 0.018 3.982 14 H 0.011 0.989 15 C -0.571 4.571 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.778 3.222 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.131 4.131 24 C -0.073 4.073 25 H 0.043 0.957 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.717 18.610 -7.210 20.142 hybrid contribution -1.419 -0.052 2.155 2.580 sum 1.298 18.558 -5.056 19.278 Atomic orbital electron populations 1.22445 0.86867 1.02425 1.00969 1.62067 1.08455 1.14763 1.41834 1.22443 1.01610 0.87644 1.00657 1.22859 0.96332 0.93519 0.91637 0.94026 1.22704 0.93226 0.96940 1.01695 1.23061 0.95698 0.91822 0.98073 1.63686 1.07601 1.19368 1.34623 1.22483 0.95696 0.93012 0.90565 0.94871 1.22505 0.96233 0.95919 0.99534 1.22009 0.97041 0.95289 0.97686 1.19217 0.93743 0.91868 0.93355 0.98926 1.21624 1.01365 1.08178 1.25924 0.93123 1.25770 0.98122 0.96565 0.98270 1.70098 1.28114 1.15738 1.41853 0.85706 0.79880 0.77562 0.79089 1.19682 1.20903 1.19616 1.22116 0.96850 0.95255 0.98887 1.22753 0.92514 0.90971 1.01037 0.95719 0.89838 0.91908 0.90534 0.90286 0.95615 0.89715 0.89252 0.93709 0.89569 0.91438 0.91472 0.95075 0.94790 0.93116 0.92955 0.93895 0.90470 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.36 127.69 1.19 1.58 16 2 N -0.55 -11.10 4.84 -916.29 -4.43 -15.54 16 3 C 0.02 0.37 9.27 127.69 1.18 1.55 16 4 C 0.07 1.50 2.63 46.09 0.12 1.63 16 5 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 6 C -0.11 -2.17 5.40 31.98 0.17 -2.00 16 7 C 0.04 1.02 5.94 86.78 0.52 1.54 16 8 N -0.53 -16.49 4.99 -854.12 -4.26 -20.75 16 9 C 0.09 3.36 2.10 45.99 0.10 3.46 16 10 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 11 C -0.10 -3.97 5.71 31.91 0.18 -3.79 16 12 C -0.08 -3.97 5.40 31.70 0.17 -3.80 16 13 C 0.04 1.95 2.83 -10.82 -0.03 1.91 16 14 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 15 C -0.53 -30.35 8.37 25.60 0.21 -30.14 16 16 H 0.05 2.83 7.33 -2.91 -0.02 2.81 16 17 C 0.01 0.65 5.32 84.66 0.45 1.10 16 18 N -0.92 -54.77 12.36 21.45 0.27 -54.51 16 19 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C -0.09 -4.06 5.21 31.32 0.16 -3.89 16 24 C 0.06 1.58 5.00 86.65 0.43 2.01 16 25 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 27 H 0.06 1.28 7.08 -2.39 -0.02 1.27 16 28 H 0.08 1.06 7.34 -2.39 -0.02 1.04 16 29 H 0.08 1.00 8.02 -2.39 -0.02 0.98 16 30 H 0.03 0.38 8.13 -2.39 -0.02 0.36 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.11 7.81 -2.39 -0.02 1.09 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.03 1.59 7.85 -2.39 -0.02 1.57 16 38 H 0.03 1.77 7.94 -2.38 -0.02 1.75 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 41 H 0.04 1.88 7.32 -2.39 -0.02 1.87 16 42 H 0.08 2.29 7.76 -2.38 -0.02 2.28 16 43 H 0.04 1.26 7.21 -2.38 -0.02 1.24 16 Total: -1.00 -62.21 327.07 -0.60 -62.81 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.93 Total: 10.28 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.87 Total: -28.83 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -8.43 Total: -90.80 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -62.21 -0.60 -62.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.212 kcal (2) G-P(sol) polarization free energy of solvation -62.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds