Wall clock time and date at job start Mon Mar 30 2020 03:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46842 * 111.00129 * 2 1 4 4 C 1.53038 * 109.52627 * 185.83830 * 3 2 1 5 5 C 1.53116 * 109.27707 * 300.82056 * 4 3 2 6 6 C 1.53005 * 109.52461 * 177.55600 * 5 4 3 7 7 N 1.46903 * 109.46608 * 65.17970 * 6 5 4 8 8 C 1.48534 * 111.00423 * 58.51824 * 7 6 5 9 9 C 1.54937 * 103.22541 * 159.71892 * 8 7 6 10 10 C 1.54594 * 102.92309 * 322.58773 * 9 8 7 11 11 C 1.47902 * 110.99447 * 175.91856 * 7 6 5 12 12 H 1.08998 * 110.08649 * 333.59333 * 11 7 6 13 13 C 1.50702 * 109.91863 * 94.80300 * 11 7 6 14 14 H 1.08001 * 120.00034 * 359.03716 * 13 11 7 15 15 C 1.37873 * 120.00088 * 179.04432 * 13 11 7 16 16 N 1.31521 * 120.00078 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00245 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47139 * 269.99950 * 17 15 13 19 19 H 1.48502 * 109.47187 * 29.99661 * 17 15 13 20 20 H 1.48504 * 109.47417 * 149.99625 * 17 15 13 21 21 C 1.53117 * 109.21549 * 57.61929 * 5 4 3 22 22 C 1.46853 * 110.99979 * 124.20782 * 2 1 3 23 23 H 1.09000 * 109.46927 * 60.00372 * 1 2 3 24 24 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47357 * 300.00111 * 1 2 3 26 26 H 1.09005 * 109.46293 * 65.82054 * 3 2 1 27 27 H 1.09002 * 109.46269 * 305.85403 * 3 2 1 28 28 H 1.08994 * 109.50488 * 180.88039 * 4 3 2 29 29 H 1.08994 * 109.53265 * 60.77784 * 4 3 2 30 30 H 1.08999 * 109.52248 * 297.68409 * 5 4 3 31 31 H 1.08992 * 109.46686 * 305.17775 * 6 5 4 32 32 H 1.08996 * 109.46844 * 185.17292 * 6 5 4 33 33 H 1.09004 * 110.66016 * 41.28886 * 8 7 6 34 34 H 1.08990 * 110.67005 * 278.15746 * 8 7 6 35 35 H 1.09004 * 110.72276 * 204.22910 * 9 8 7 36 36 H 1.08997 * 110.72403 * 80.94547 * 9 8 7 37 37 H 1.09005 * 110.31173 * 263.04086 * 10 9 8 38 38 H 1.09004 * 110.39698 * 140.91792 * 10 9 8 39 39 H 0.96999 * 119.99797 * 0.02562 * 16 15 13 40 40 H 1.08995 * 109.50271 * 62.32061 * 21 5 4 41 41 H 1.09001 * 109.50828 * 182.43704 * 21 5 4 42 42 H 1.09009 * 109.45825 * 294.18013 * 22 2 1 43 43 H 1.09002 * 109.46171 * 54.15620 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0144 6 6 5.6362 0.4449 0.8406 7 7 6.2239 1.7867 0.9509 8 6 5.9021 2.4026 2.2637 9 6 6.9840 3.5014 2.4144 10 6 8.2396 2.8361 1.8056 11 6 7.7002 1.7256 0.8851 12 1 8.0504 0.7533 1.2317 13 6 8.1613 1.9626 -0.5299 14 1 7.4366 2.1265 -1.3137 15 6 9.5083 1.9701 -0.8239 16 7 10.3909 1.7709 0.1307 17 14 10.0799 2.2632 -2.5779 18 1 10.1856 0.9631 -3.2879 19 1 9.1006 3.1319 -3.2791 20 1 11.4079 2.9275 -2.5614 21 6 3.5183 -0.8715 1.0226 22 6 1.9953 -0.7708 1.1338 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.7325 1.8608 0.9376 27 1 1.5635 1.9257 -0.8330 28 1 3.9099 2.3512 -0.1310 29 1 3.7819 0.8571 -1.0905 30 1 3.8896 1.0361 1.9559 31 1 5.8648 0.0275 -0.1399 32 1 6.0522 -0.1988 1.6156 33 1 5.9861 1.6676 3.0643 34 1 4.9055 2.8435 2.2478 35 1 7.1459 3.7417 3.4653 36 1 6.7088 4.3933 1.8517 37 1 8.8598 2.4071 2.5927 38 1 8.8116 3.5620 1.2276 39 1 10.0941 1.6183 1.0415 40 1 3.7816 -1.3847 0.0977 41 1 3.9102 -1.4293 1.8731 42 1 1.7324 -0.2707 2.0661 43 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260179984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:21 Heat of formation + Delta-G solvation = -7.940212 kcal Electronic energy + Delta-G solvation = -19682.082406 eV Core-core repulsion = 16954.123789 eV Total energy + Delta-G solvation = -2727.958617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.26081 -37.83953 -34.40133 -32.66167 -30.79928 -30.53243 -27.87897 -26.96507 -24.46083 -23.70552 -22.98362 -21.61606 -20.25609 -19.56275 -19.05189 -16.85667 -15.72544 -15.25378 -15.05081 -14.60112 -14.41815 -14.09327 -13.72899 -13.49983 -13.16447 -12.89224 -12.50012 -12.33320 -12.17066 -11.87645 -11.46537 -11.41122 -11.09555 -11.03287 -10.83795 -10.67340 -10.42461 -10.34300 -10.12239 -10.05675 -9.94866 -9.74665 -9.66471 -8.60530 -8.35450 -8.26544 -7.32359 -6.26680 -3.96439 3.48521 3.52231 3.68334 3.92692 4.55948 4.78218 4.92308 4.99337 5.07712 5.24020 5.32171 5.39507 5.42025 5.52468 5.56536 5.61361 5.67610 5.71658 5.73955 5.82913 5.88021 5.92682 6.03024 6.14212 6.20102 6.23550 6.37773 6.40532 6.44670 6.50808 6.65642 6.77735 6.87779 6.93742 7.04973 7.07313 7.10182 7.39558 7.87612 8.11572 8.34721 8.68192 8.96939 9.73920 11.10969 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.005480 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.319344 B = 5108.559540 C = 5626.524123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.100 4.100 5 C -0.084 4.084 6 C 0.062 3.938 7 N -0.500 5.500 8 C 0.034 3.966 9 C -0.122 4.122 10 C -0.120 4.120 11 C 0.190 3.810 12 H -0.003 1.003 13 C -0.570 4.570 14 H 0.057 0.943 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 1.072 2.928 18 H -0.290 1.290 19 H -0.288 1.288 20 H -0.286 1.286 21 C -0.113 4.113 22 C 0.059 3.941 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.269 0.731 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.028 0.972 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.121 -2.258 3.258 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.138 4.138 5 C -0.103 4.103 6 C -0.067 4.067 7 N -0.224 5.224 8 C -0.094 4.094 9 C -0.160 4.160 10 C -0.159 4.159 11 C 0.083 3.917 12 H 0.015 0.985 13 C -0.609 4.609 14 H 0.075 0.925 15 C -0.189 4.189 16 N -0.556 5.556 17 Si 0.901 3.099 18 H -0.217 1.217 19 H -0.214 1.214 20 H -0.212 1.212 21 C -0.151 4.151 22 C -0.069 4.069 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.816 -2.058 1.429 15.026 hybrid contribution -1.340 -0.322 2.510 2.863 sum -16.155 -2.379 3.939 16.798 Atomic orbital electron populations 1.22337 0.87869 1.01684 1.00382 1.61934 1.07003 1.14478 1.43437 1.22180 0.96920 0.88267 0.99844 1.21504 0.91905 1.01675 0.98730 1.21231 0.95230 0.95114 0.98706 1.22156 0.92461 0.91057 1.01011 1.64782 1.11738 1.18205 1.27701 1.23134 0.98329 0.96339 0.91595 1.22448 0.96477 0.98192 0.98885 1.22632 0.95740 0.99755 0.97729 1.20104 0.82257 0.92742 0.96605 0.98536 1.21938 0.93893 1.52194 0.92885 0.92505 1.25772 0.93037 0.94511 1.05617 1.70768 1.36757 1.45694 1.02402 0.83493 0.75580 0.76566 0.74262 1.21662 1.21450 1.21221 1.21631 0.93618 0.97484 1.02371 1.22062 0.96010 0.97656 0.91125 0.91485 0.91666 0.96071 0.95431 0.91086 0.90132 0.91249 0.92082 0.90626 0.96291 0.95557 0.91795 0.93031 0.91657 0.94398 0.90942 0.91963 0.90922 0.91898 0.95350 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.59 60.07 0.58 0.83 16 2 N -0.54 -6.72 4.91 -242.95 -1.19 -7.92 16 3 C 0.06 0.71 5.46 -3.84 -0.02 0.69 16 4 C -0.10 -1.52 5.24 -26.65 -0.14 -1.66 16 5 C -0.08 -1.28 2.08 -90.50 -0.19 -1.46 16 6 C 0.06 1.18 4.23 -3.82 -0.02 1.16 16 7 N -0.50 -10.72 4.48 -223.94 -1.00 -11.72 16 8 C 0.03 0.64 5.35 -1.90 -0.01 0.63 16 9 C -0.12 -2.35 7.06 -24.87 -0.18 -2.53 16 10 C -0.12 -2.82 4.96 -25.37 -0.13 -2.94 16 11 C 0.19 4.80 2.10 -67.79 -0.14 4.66 16 12 H 0.00 -0.08 7.54 -51.93 -0.39 -0.47 16 13 C -0.57 -16.06 8.69 -34.44 -0.30 -16.36 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.01 0.40 5.08 -17.82 -0.09 0.30 16 16 N -0.92 -27.57 13.28 55.43 0.74 -26.84 16 17 Si 1.07 25.53 29.90 -169.99 -5.08 20.45 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.11 -1.49 5.38 -26.65 -0.14 -1.63 16 22 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 28 H 0.08 1.33 7.83 -51.93 -0.41 0.93 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.93 6.64 -51.93 -0.35 0.59 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.02 0.37 7.98 -51.93 -0.41 -0.05 16 33 H 0.03 0.48 8.01 -51.93 -0.42 0.06 16 34 H 0.06 1.07 7.54 -51.93 -0.39 0.68 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.04 0.87 7.84 -51.93 -0.41 0.47 16 38 H 0.07 1.89 7.25 -51.93 -0.38 1.51 16 39 H 0.27 8.01 5.92 -40.82 -0.24 7.77 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -29.66 324.69 -10.53 -40.19 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.09 Total: -1.43 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.80 Total: -17.63 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -1.46 Total: -46.47 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.66 -10.53 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.252 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds