Wall clock time and date at job start Mon Mar 30 2020 03:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46842 * 111.00129 * 2 1 4 4 C 1.53038 * 109.52627 * 185.83830 * 3 2 1 5 5 C 1.53116 * 109.27707 * 300.82056 * 4 3 2 6 6 C 1.53005 * 109.52461 * 177.55600 * 5 4 3 7 7 N 1.46903 * 109.46608 * 65.17970 * 6 5 4 8 8 C 1.48534 * 111.00423 * 58.51824 * 7 6 5 9 9 C 1.54937 * 103.22541 * 159.71892 * 8 7 6 10 10 C 1.54594 * 102.92309 * 322.58773 * 9 8 7 11 11 C 1.47902 * 110.99447 * 175.91856 * 7 6 5 12 12 H 1.08998 * 110.08649 * 333.59333 * 11 7 6 13 13 C 1.50702 * 109.91863 * 94.80300 * 11 7 6 14 14 H 1.08001 * 120.00034 * 359.03716 * 13 11 7 15 15 C 1.37873 * 120.00088 * 179.04432 * 13 11 7 16 16 N 1.31521 * 120.00078 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00245 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47139 * 269.99950 * 17 15 13 19 19 H 1.48502 * 109.47187 * 29.99661 * 17 15 13 20 20 H 1.48504 * 109.47417 * 149.99625 * 17 15 13 21 21 C 1.53117 * 109.21549 * 57.61929 * 5 4 3 22 22 C 1.46853 * 110.99979 * 124.20782 * 2 1 3 23 23 H 1.09000 * 109.46927 * 60.00372 * 1 2 3 24 24 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47357 * 300.00111 * 1 2 3 26 26 H 1.09005 * 109.46293 * 65.82054 * 3 2 1 27 27 H 1.09002 * 109.46269 * 305.85403 * 3 2 1 28 28 H 1.08994 * 109.50488 * 180.88039 * 4 3 2 29 29 H 1.08994 * 109.53265 * 60.77784 * 4 3 2 30 30 H 1.08999 * 109.52248 * 297.68409 * 5 4 3 31 31 H 1.08992 * 109.46686 * 305.17775 * 6 5 4 32 32 H 1.08996 * 109.46844 * 185.17292 * 6 5 4 33 33 H 1.09004 * 110.66016 * 41.28886 * 8 7 6 34 34 H 1.08990 * 110.67005 * 278.15746 * 8 7 6 35 35 H 1.09004 * 110.72276 * 204.22910 * 9 8 7 36 36 H 1.08997 * 110.72403 * 80.94547 * 9 8 7 37 37 H 1.09005 * 110.31173 * 263.04086 * 10 9 8 38 38 H 1.09004 * 110.39698 * 140.91792 * 10 9 8 39 39 H 0.96999 * 119.99797 * 0.02562 * 16 15 13 40 40 H 1.08995 * 109.50271 * 62.32061 * 21 5 4 41 41 H 1.09001 * 109.50828 * 182.43704 * 21 5 4 42 42 H 1.09009 * 109.45825 * 294.18013 * 22 2 1 43 43 H 1.09002 * 109.46171 * 54.15620 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0144 6 6 5.6362 0.4449 0.8406 7 7 6.2239 1.7867 0.9509 8 6 5.9021 2.4026 2.2637 9 6 6.9840 3.5014 2.4144 10 6 8.2396 2.8361 1.8056 11 6 7.7002 1.7256 0.8851 12 1 8.0504 0.7533 1.2317 13 6 8.1613 1.9626 -0.5299 14 1 7.4366 2.1265 -1.3137 15 6 9.5083 1.9701 -0.8239 16 7 10.3909 1.7709 0.1307 17 14 10.0799 2.2632 -2.5779 18 1 10.1856 0.9631 -3.2879 19 1 9.1006 3.1319 -3.2791 20 1 11.4079 2.9275 -2.5614 21 6 3.5183 -0.8715 1.0226 22 6 1.9953 -0.7708 1.1338 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.7325 1.8608 0.9376 27 1 1.5635 1.9257 -0.8330 28 1 3.9099 2.3512 -0.1310 29 1 3.7819 0.8571 -1.0905 30 1 3.8896 1.0361 1.9559 31 1 5.8648 0.0275 -0.1399 32 1 6.0522 -0.1988 1.6156 33 1 5.9861 1.6676 3.0643 34 1 4.9055 2.8435 2.2478 35 1 7.1459 3.7417 3.4653 36 1 6.7088 4.3933 1.8517 37 1 8.8598 2.4071 2.5927 38 1 8.8116 3.5620 1.2276 39 1 10.0941 1.6183 1.0415 40 1 3.7816 -1.3847 0.0977 41 1 3.9102 -1.4293 1.8731 42 1 1.7324 -0.2707 2.0661 43 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260179984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:21 Heat of formation + Delta-G solvation = -26.957260 kcal Electronic energy + Delta-G solvation = -19682.907047 eV Core-core repulsion = 16954.123789 eV Total energy + Delta-G solvation = -2728.783259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56318 -39.31755 -35.80464 -34.60576 -32.13832 -31.74711 -29.73839 -28.18750 -26.30438 -25.17344 -24.04845 -22.94196 -21.66783 -21.44518 -20.34000 -18.94503 -16.91132 -16.71354 -16.15906 -15.98669 -15.72031 -15.52910 -15.37652 -15.33480 -14.35919 -14.26869 -13.93572 -13.60522 -13.32664 -13.28010 -13.03986 -12.88245 -12.70882 -12.36236 -12.28175 -12.12460 -12.11253 -11.97349 -11.88406 -11.56751 -11.39401 -11.21572 -11.14153 -10.65559 -10.43898 -9.25242 -9.11911 -8.55417 -6.26707 1.53240 1.61842 1.80277 2.57785 3.03317 3.19791 3.26562 3.73880 3.86441 3.90609 3.98365 4.11515 4.20540 4.27073 4.39600 4.43551 4.50029 4.51827 4.56399 4.63427 4.70721 4.72224 4.76812 4.80788 4.90062 4.94934 4.96363 5.02969 5.07367 5.08666 5.10405 5.23125 5.25982 5.38945 5.46992 5.52918 5.93008 6.14723 6.15955 6.19115 6.41614 6.47871 6.73342 7.51636 8.81963 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.005480 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.319344 B = 5108.559540 C = 5626.524123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.561 5.561 3 C 0.063 3.937 4 C -0.096 4.096 5 C -0.072 4.072 6 C 0.066 3.934 7 N -0.510 5.510 8 C 0.038 3.962 9 C -0.112 4.112 10 C -0.115 4.115 11 C 0.188 3.812 12 H -0.038 1.038 13 C -0.581 4.581 14 H 0.043 0.957 15 C -0.033 4.033 16 N -0.941 5.941 17 Si 1.116 2.884 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.283 1.283 21 C -0.110 4.110 22 C 0.063 3.937 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.259 0.741 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.421 -1.990 3.735 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.134 4.134 5 C -0.091 4.091 6 C -0.063 4.063 7 N -0.234 5.234 8 C -0.089 4.089 9 C -0.150 4.150 10 C -0.154 4.154 11 C 0.080 3.920 12 H -0.020 1.020 13 C -0.620 4.620 14 H 0.061 0.939 15 C -0.230 4.230 16 N -0.579 5.579 17 Si 0.939 3.061 18 H -0.203 1.203 19 H -0.199 1.199 20 H -0.208 1.208 21 C -0.148 4.148 22 C -0.064 4.064 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.151 -1.795 1.921 17.351 hybrid contribution -0.641 -0.443 2.370 2.495 sum -17.792 -2.238 4.291 18.438 Atomic orbital electron populations 1.22386 0.86012 1.02725 1.01025 1.61916 1.08747 1.14015 1.43929 1.22053 0.94769 0.89039 1.00577 1.21400 0.94057 1.00254 0.97660 1.21136 0.92073 0.96810 0.99072 1.22140 0.95218 0.89717 0.99200 1.64700 1.09053 1.19651 1.29983 1.23216 0.99426 0.96073 0.90205 1.22441 0.94032 0.98038 1.00515 1.22428 0.97342 0.98625 0.97030 1.19958 0.84987 0.91538 0.95500 1.02014 1.22204 0.93901 1.51763 0.94133 0.93882 1.27132 0.93519 0.93736 1.08647 1.70876 1.37138 1.47535 1.02376 0.82926 0.75557 0.77293 0.70325 1.20296 1.19917 1.20844 1.21600 0.95121 0.95864 1.02214 1.22043 0.94432 0.98688 0.91278 0.90913 0.90484 0.95326 0.94663 0.90297 0.91806 0.93273 0.91134 0.93417 0.96916 0.94626 0.88979 0.89777 0.91351 0.94807 0.94083 0.93073 0.92173 0.90923 0.94595 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.59 127.69 1.22 1.66 16 2 N -0.56 -12.44 4.91 -922.55 -4.53 -16.97 16 3 C 0.06 1.49 5.46 86.33 0.47 1.96 16 4 C -0.10 -2.82 5.24 30.65 0.16 -2.66 16 5 C -0.07 -2.12 2.08 -10.71 -0.02 -2.14 16 6 C 0.07 2.55 4.23 86.30 0.37 2.91 16 7 N -0.51 -22.01 4.48 -862.42 -3.86 -25.88 16 8 C 0.04 1.36 5.35 86.65 0.46 1.82 16 9 C -0.11 -4.15 7.06 31.80 0.22 -3.93 16 10 C -0.12 -5.52 4.96 31.47 0.16 -5.37 16 11 C 0.19 9.82 2.10 44.31 0.09 9.92 16 12 H -0.04 -2.18 7.54 -2.39 -0.02 -2.20 16 13 C -0.58 -33.83 8.69 25.60 0.22 -33.61 16 14 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 15 C -0.03 -1.91 5.08 84.65 0.43 -1.48 16 16 N -0.94 -58.10 13.28 21.45 0.28 -57.82 16 17 Si 1.12 51.99 29.90 68.60 2.05 54.04 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 C -0.11 -2.73 5.38 30.65 0.16 -2.57 16 22 C 0.06 1.31 5.46 86.33 0.47 1.79 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.08 8.09 -2.39 -0.02 1.07 16 25 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 28 H 0.06 2.08 7.83 -2.39 -0.02 2.06 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.97 6.64 -2.39 -0.02 1.95 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.01 0.50 7.98 -2.39 -0.02 0.48 16 33 H 0.04 1.21 8.01 -2.38 -0.02 1.19 16 34 H 0.09 2.79 7.54 -2.39 -0.02 2.77 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.03 1.60 7.84 -2.38 -0.02 1.58 16 38 H 0.04 2.19 7.25 -2.39 -0.02 2.17 16 39 H 0.26 16.06 5.92 -92.71 -0.55 15.51 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 Total: -1.00 -65.71 324.69 -0.48 -66.19 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.15 Total: 12.14 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.43 Total: -31.70 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -8.11 Total: -100.67 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -65.71 -0.48 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.231 kcal (2) G-P(sol) polarization free energy of solvation -65.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds