Wall clock time and date at job start Mon Mar 30 2020 03:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46846 * 110.99638 * 2 1 4 4 C 1.53040 * 109.52078 * 174.16053 * 3 2 1 5 5 C 1.53116 * 109.27869 * 59.18299 * 4 3 2 6 6 C 1.52998 * 109.52556 * 182.37678 * 5 4 3 7 7 N 1.46892 * 109.47215 * 186.06037 * 6 5 4 8 8 C 1.47906 * 111.00160 * 177.68141 * 7 6 5 9 9 C 1.53992 * 107.06065 * 214.15911 * 8 7 6 10 10 C 1.54600 * 105.13886 * 1.22288 * 9 8 7 11 11 C 1.48538 * 111.00001 * 60.28758 * 7 6 5 12 12 H 1.08997 * 110.66595 * 41.28563 * 11 7 6 13 13 C 1.50699 * 110.66364 * 278.15309 * 11 7 6 14 14 H 1.08001 * 120.00290 * 354.56192 * 13 11 7 15 15 C 1.37882 * 119.99951 * 174.56391 * 13 11 7 16 16 N 1.31514 * 119.99659 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00232 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47041 * 89.99534 * 17 15 13 19 19 H 1.48496 * 109.47151 * 209.99845 * 17 15 13 20 20 H 1.48509 * 109.46722 * 329.99726 * 17 15 13 21 21 C 1.53119 * 109.21292 * 302.31456 * 5 4 3 22 22 C 1.46847 * 110.99832 * 235.79384 * 2 1 3 23 23 H 1.08997 * 109.47688 * 59.99773 * 1 2 3 24 24 H 1.09008 * 109.47265 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47233 * 299.99882 * 1 2 3 26 26 H 1.09002 * 109.46115 * 54.14759 * 3 2 1 27 27 H 1.08998 * 109.46882 * 294.17908 * 3 2 1 28 28 H 1.09002 * 109.50182 * 299.24009 * 4 3 2 29 29 H 1.09003 * 109.50352 * 179.12545 * 4 3 2 30 30 H 1.08997 * 109.52298 * 62.24988 * 5 4 3 31 31 H 1.08997 * 109.46846 * 306.06357 * 6 5 4 32 32 H 1.08998 * 109.47202 * 66.06041 * 6 5 4 33 33 H 1.09007 * 109.91482 * 333.50690 * 8 7 6 34 34 H 1.08996 * 109.91756 * 94.80037 * 8 7 6 35 35 H 1.09001 * 110.31481 * 120.13904 * 9 8 7 36 36 H 1.09004 * 110.30842 * 242.20872 * 9 8 7 37 37 H 1.08995 * 110.72653 * 140.32059 * 10 9 8 38 38 H 1.09002 * 110.72501 * 263.60011 * 10 9 8 39 39 H 0.97002 * 119.99751 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.50468 * 177.62653 * 21 5 4 41 41 H 1.09003 * 109.50449 * 297.74514 * 21 5 4 42 42 H 1.09000 * 109.46512 * 305.85307 * 22 2 1 43 43 H 1.09005 * 109.46400 * 65.82098 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5371 -1.0144 6 6 5.6362 0.4464 -0.8414 7 7 6.2268 -0.1907 -2.0259 8 6 7.7010 -0.2457 -1.9186 9 6 8.2642 -0.0738 -3.3414 10 6 7.0248 0.1120 -4.2466 11 6 5.9392 0.5958 -3.2526 12 1 6.0437 1.6633 -3.0584 13 6 4.5613 0.2811 -3.7752 14 1 3.9728 -0.4972 -3.3122 15 6 4.0518 0.9867 -4.8447 16 7 4.7682 1.9347 -5.4082 17 14 2.3434 0.5971 -5.4921 18 1 1.3425 1.4335 -4.7824 19 1 2.2878 0.8866 -6.9475 20 1 2.0421 -0.8386 -5.2610 21 6 3.5195 -0.8719 -1.0216 22 6 1.9952 -0.7707 -1.1338 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.5633 1.9257 0.8330 27 1 1.7324 1.8609 -0.9375 28 1 3.7813 0.8568 1.0906 29 1 3.9098 2.3513 0.1311 30 1 3.8886 1.0356 -1.9560 31 1 6.0490 1.4484 -0.7239 32 1 5.8662 -0.1473 0.0433 33 1 8.0571 0.5614 -1.2783 34 1 8.0080 -1.2091 -1.5116 35 1 8.9044 0.8070 -3.3911 36 1 8.8212 -0.9627 -3.6378 37 1 7.2138 0.8675 -5.0092 38 1 6.7353 -0.8344 -4.7033 39 1 4.4096 2.4314 -6.1604 40 1 3.9122 -1.4301 -1.8715 41 1 3.7827 -1.3841 -0.0961 42 1 1.5634 -1.7715 -1.1244 43 1 1.7324 -0.2707 -2.0661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260179987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:24 Heat of formation + Delta-G solvation = -0.451687 kcal Electronic energy + Delta-G solvation = -20377.408547 eV Core-core repulsion = 17649.774656 eV Total energy + Delta-G solvation = -2727.633891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.95773 -37.52322 -33.87495 -32.64084 -30.51031 -30.18571 -28.23464 -26.75695 -24.52455 -23.60409 -22.60823 -21.13561 -19.93343 -19.42608 -18.60214 -16.52213 -15.37673 -14.97703 -14.80342 -14.50499 -14.24941 -14.04284 -13.69271 -13.16559 -12.86219 -12.46112 -12.20913 -12.06538 -11.93890 -11.60537 -11.46853 -11.07992 -11.01439 -10.92399 -10.77486 -10.55828 -10.43867 -10.06296 -9.93142 -9.70719 -9.61074 -9.43646 -9.32000 -8.87053 -8.39643 -7.98984 -7.23301 -6.02866 -3.98902 3.26753 3.35216 3.38171 4.30798 4.39754 5.05285 5.25725 5.32743 5.37125 5.49071 5.61769 5.66893 5.73374 5.76346 5.86144 5.95020 5.98423 6.00830 6.09107 6.13533 6.23920 6.26592 6.34580 6.43612 6.50364 6.56497 6.60109 6.65422 6.70907 6.81169 7.04255 7.11207 7.17398 7.38775 7.42196 7.48413 7.55537 7.58951 7.89340 8.11010 8.28406 8.55486 9.06196 9.60484 11.07243 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.010067 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.739645 B = 2780.699684 C = 3992.510223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.059 3.941 4 C -0.110 4.110 5 C -0.100 4.100 6 C 0.070 3.930 7 N -0.516 5.516 8 C 0.039 3.961 9 C -0.136 4.136 10 C -0.104 4.104 11 C 0.203 3.797 12 H 0.014 0.986 13 C -0.491 4.491 14 H 0.077 0.923 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.883 3.117 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.271 1.271 21 C -0.093 4.093 22 C 0.053 3.947 23 H 0.021 0.979 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.017 0.983 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.259 0.741 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -2.179 8.517 9.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.069 4.069 4 C -0.148 4.148 5 C -0.118 4.118 6 C -0.059 4.059 7 N -0.241 5.241 8 C -0.090 4.090 9 C -0.174 4.174 10 C -0.143 4.143 11 C 0.097 3.903 12 H 0.032 0.968 13 C -0.529 4.529 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.711 3.289 18 H -0.210 1.210 19 H -0.214 1.214 20 H -0.196 1.196 21 C -0.131 4.131 22 C -0.074 4.074 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.261 -2.797 8.768 9.477 hybrid contribution -0.831 1.187 -1.075 1.804 sum -3.093 -1.610 7.694 8.447 Atomic orbital electron populations 1.22326 0.88451 1.01510 1.00095 1.62009 1.06603 1.14001 1.44196 1.22034 0.96130 0.88886 0.99843 1.21622 0.93786 0.99930 0.99494 1.21573 0.93330 0.96520 1.00367 1.22014 0.95129 0.95443 0.93291 1.64801 1.05832 1.49897 1.03542 1.22713 0.90643 0.99124 0.96507 1.22467 0.99098 0.99804 0.96052 1.22454 0.93154 1.00761 0.97951 1.20332 0.94635 0.91152 0.84165 0.96805 1.21227 0.99584 1.18471 1.13626 0.90555 1.24941 0.97213 0.95305 0.96782 1.69960 1.36970 1.22787 1.23510 0.86721 0.85059 0.78882 0.78203 1.20973 1.21371 1.19622 1.21521 0.92005 0.97563 1.01986 1.22194 0.97209 0.96964 0.91048 0.96031 0.91795 0.91932 0.91776 0.94832 0.92250 0.92354 0.86399 0.96534 0.93099 0.95637 0.92232 0.93193 0.92868 0.91745 0.92563 0.93130 0.89331 0.93148 0.91781 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.59 60.06 0.58 0.91 16 2 N -0.54 -8.64 4.91 -242.87 -1.19 -9.83 16 3 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 4 C -0.11 -1.80 5.38 -26.65 -0.14 -1.94 16 5 C -0.10 -1.90 1.70 -90.50 -0.15 -2.05 16 6 C 0.07 1.34 4.17 -3.83 -0.02 1.33 16 7 N -0.52 -10.89 4.65 -223.99 -1.04 -11.93 16 8 C 0.04 0.73 6.70 -2.75 -0.02 0.71 16 9 C -0.14 -2.59 6.93 -25.37 -0.18 -2.76 16 10 C -0.10 -2.40 6.15 -24.87 -0.15 -2.55 16 11 C 0.20 4.92 1.82 -66.94 -0.12 4.80 16 12 H 0.01 0.39 7.98 -51.93 -0.41 -0.03 16 13 C -0.49 -12.56 5.82 -34.44 -0.20 -12.76 16 14 H 0.08 1.93 4.59 -52.49 -0.24 1.69 16 15 C 0.06 1.57 5.40 -17.82 -0.10 1.47 16 16 N -0.89 -24.97 12.85 55.43 0.71 -24.26 16 17 Si 0.88 20.87 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.09 -1.71 4.55 -26.58 -0.12 -1.83 16 22 C 0.05 0.93 5.47 -3.76 -0.02 0.90 16 23 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.78 8.09 -51.92 -0.42 0.36 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.89 8.12 -51.93 -0.42 0.46 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.12 2.70 5.06 -51.93 -0.26 2.44 16 31 H 0.02 0.32 7.99 -51.93 -0.42 -0.09 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.46 7.70 -51.92 -0.40 0.06 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.58 7.96 -51.93 -0.41 1.17 16 38 H 0.06 1.33 8.05 -51.93 -0.42 0.92 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -26.72 319.92 -10.31 -37.04 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.92 Total: 1.18 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.67 Total: -12.86 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -1.52 Total: -46.02 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.72 -10.31 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.584 kcal (2) G-P(sol) polarization free energy of solvation -26.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds