Wall clock time and date at job start Mon Mar 30 2020 03:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46846 * 110.99638 * 2 1 4 4 C 1.53040 * 109.52078 * 174.16053 * 3 2 1 5 5 C 1.53116 * 109.27869 * 59.18299 * 4 3 2 6 6 C 1.52998 * 109.52556 * 182.37678 * 5 4 3 7 7 N 1.46892 * 109.47215 * 186.06037 * 6 5 4 8 8 C 1.47906 * 111.00160 * 177.68141 * 7 6 5 9 9 C 1.53992 * 107.06065 * 214.15911 * 8 7 6 10 10 C 1.54600 * 105.13886 * 1.22288 * 9 8 7 11 11 C 1.48538 * 111.00001 * 60.28758 * 7 6 5 12 12 H 1.08997 * 110.66595 * 41.28563 * 11 7 6 13 13 C 1.50699 * 110.66364 * 278.15309 * 11 7 6 14 14 H 1.08001 * 120.00290 * 354.56192 * 13 11 7 15 15 C 1.37882 * 119.99951 * 174.56391 * 13 11 7 16 16 N 1.31514 * 119.99659 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00232 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47041 * 89.99534 * 17 15 13 19 19 H 1.48496 * 109.47151 * 209.99845 * 17 15 13 20 20 H 1.48509 * 109.46722 * 329.99726 * 17 15 13 21 21 C 1.53119 * 109.21292 * 302.31456 * 5 4 3 22 22 C 1.46847 * 110.99832 * 235.79384 * 2 1 3 23 23 H 1.08997 * 109.47688 * 59.99773 * 1 2 3 24 24 H 1.09008 * 109.47265 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47233 * 299.99882 * 1 2 3 26 26 H 1.09002 * 109.46115 * 54.14759 * 3 2 1 27 27 H 1.08998 * 109.46882 * 294.17908 * 3 2 1 28 28 H 1.09002 * 109.50182 * 299.24009 * 4 3 2 29 29 H 1.09003 * 109.50352 * 179.12545 * 4 3 2 30 30 H 1.08997 * 109.52298 * 62.24988 * 5 4 3 31 31 H 1.08997 * 109.46846 * 306.06357 * 6 5 4 32 32 H 1.08998 * 109.47202 * 66.06041 * 6 5 4 33 33 H 1.09007 * 109.91482 * 333.50690 * 8 7 6 34 34 H 1.08996 * 109.91756 * 94.80037 * 8 7 6 35 35 H 1.09001 * 110.31481 * 120.13904 * 9 8 7 36 36 H 1.09004 * 110.30842 * 242.20872 * 9 8 7 37 37 H 1.08995 * 110.72653 * 140.32059 * 10 9 8 38 38 H 1.09002 * 110.72501 * 263.60011 * 10 9 8 39 39 H 0.97002 * 119.99751 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.50468 * 177.62653 * 21 5 4 41 41 H 1.09003 * 109.50449 * 297.74514 * 21 5 4 42 42 H 1.09000 * 109.46512 * 305.85307 * 22 2 1 43 43 H 1.09005 * 109.46400 * 65.82098 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5371 -1.0144 6 6 5.6362 0.4464 -0.8414 7 7 6.2268 -0.1907 -2.0259 8 6 7.7010 -0.2457 -1.9186 9 6 8.2642 -0.0738 -3.3414 10 6 7.0248 0.1120 -4.2466 11 6 5.9392 0.5958 -3.2526 12 1 6.0437 1.6633 -3.0584 13 6 4.5613 0.2811 -3.7752 14 1 3.9728 -0.4972 -3.3122 15 6 4.0518 0.9867 -4.8447 16 7 4.7682 1.9347 -5.4082 17 14 2.3434 0.5971 -5.4921 18 1 1.3425 1.4335 -4.7824 19 1 2.2878 0.8866 -6.9475 20 1 2.0421 -0.8386 -5.2610 21 6 3.5195 -0.8719 -1.0216 22 6 1.9952 -0.7707 -1.1338 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.5633 1.9257 0.8330 27 1 1.7324 1.8609 -0.9375 28 1 3.7813 0.8568 1.0906 29 1 3.9098 2.3513 0.1311 30 1 3.8886 1.0356 -1.9560 31 1 6.0490 1.4484 -0.7239 32 1 5.8662 -0.1473 0.0433 33 1 8.0571 0.5614 -1.2783 34 1 8.0080 -1.2091 -1.5116 35 1 8.9044 0.8070 -3.3911 36 1 8.8212 -0.9627 -3.6378 37 1 7.2138 0.8675 -5.0092 38 1 6.7353 -0.8344 -4.7033 39 1 4.4096 2.4314 -6.1604 40 1 3.9122 -1.4301 -1.8715 41 1 3.7827 -1.3841 -0.0961 42 1 1.5634 -1.7715 -1.1244 43 1 1.7324 -0.2707 -2.0661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260179987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:24 Heat of formation + Delta-G solvation = -17.062614 kcal Electronic energy + Delta-G solvation = -20378.128851 eV Core-core repulsion = 17649.774656 eV Total energy + Delta-G solvation = -2728.354195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46057 -39.05608 -35.30563 -34.64534 -31.97671 -31.64318 -30.08553 -28.12417 -26.35117 -25.06585 -23.98124 -22.64870 -21.57987 -21.07572 -20.14216 -18.48556 -16.87935 -16.57804 -16.46735 -15.96208 -15.75843 -15.50062 -15.21209 -14.77712 -14.29576 -14.16043 -13.73959 -13.66879 -13.22381 -13.07630 -12.98706 -12.93839 -12.55432 -12.48565 -12.36363 -12.22073 -11.96875 -11.79553 -11.63934 -11.43079 -11.07982 -10.99950 -10.96341 -10.74796 -10.42727 -9.28472 -8.95713 -8.08640 -6.07506 1.34867 1.38334 1.46601 2.41780 3.06595 3.22228 3.46921 3.97200 4.04671 4.07039 4.17619 4.26168 4.32373 4.39444 4.51444 4.54965 4.63606 4.71262 4.71682 4.74570 4.79999 4.91179 4.93452 4.98616 5.00566 5.06386 5.12409 5.18311 5.19220 5.24275 5.35469 5.41973 5.54882 5.56996 5.68726 5.88140 5.92880 6.16252 6.19808 6.24333 6.51609 6.68356 7.02698 7.53986 9.01557 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.010067 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.739645 B = 2780.699684 C = 3992.510223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.543 5.543 3 C 0.059 3.941 4 C -0.104 4.104 5 C -0.097 4.097 6 C 0.071 3.929 7 N -0.522 5.522 8 C 0.037 3.963 9 C -0.127 4.127 10 C -0.103 4.103 11 C 0.207 3.793 12 H -0.026 1.026 13 C -0.482 4.482 14 H 0.077 0.923 15 C 0.011 3.989 16 N -0.927 5.927 17 Si 0.934 3.066 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.264 1.264 21 C -0.084 4.084 22 C 0.057 3.943 23 H 0.012 0.988 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.009 0.991 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.009 0.991 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.256 0.744 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 -3.419 10.670 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.267 5.267 3 C -0.069 4.069 4 C -0.142 4.142 5 C -0.115 4.115 6 C -0.057 4.057 7 N -0.247 5.247 8 C -0.091 4.091 9 C -0.165 4.165 10 C -0.142 4.142 11 C 0.100 3.900 12 H -0.008 1.008 13 C -0.520 4.520 14 H 0.095 0.905 15 C -0.186 4.186 16 N -0.569 5.569 17 Si 0.761 3.239 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.188 1.188 21 C -0.121 4.121 22 C -0.071 4.071 23 H 0.031 0.969 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.027 0.973 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -2.558 -4.054 10.939 11.943 hybrid contribution -0.730 1.567 -1.678 2.409 sum -3.288 -2.486 9.260 10.136 Atomic orbital electron populations 1.22438 0.86650 1.02705 1.00729 1.62053 1.08250 1.13605 1.42830 1.22064 0.95904 0.89160 0.99728 1.21562 0.94102 0.99708 0.98833 1.21415 0.93662 0.96999 0.99457 1.22073 0.95047 0.95355 0.93259 1.64768 1.07762 1.49107 1.03039 1.22837 0.88930 1.00866 0.96511 1.22419 0.97454 1.01481 0.95127 1.22284 0.95133 0.99065 0.97746 1.20100 0.94536 0.89233 0.86126 1.00824 1.21469 1.00230 1.17572 1.12757 0.90494 1.25557 1.00084 0.95539 0.97458 1.70079 1.38404 1.24139 1.24228 0.85902 0.81688 0.78922 0.77345 1.21027 1.21507 1.18815 1.21370 0.92655 0.96690 1.01433 1.22122 0.96724 0.97819 0.90463 0.96894 0.90407 0.89749 0.89058 0.97236 0.90534 0.92174 0.90794 0.97273 0.90669 0.94565 0.89759 0.92254 0.90353 0.94322 0.93765 0.93508 0.91858 0.91708 0.90132 0.97558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.59 127.69 1.22 1.77 16 2 N -0.54 -16.06 4.91 -922.29 -4.53 -20.60 16 3 C 0.06 1.79 5.46 86.33 0.47 2.26 16 4 C -0.10 -3.24 5.38 30.65 0.16 -3.07 16 5 C -0.10 -3.65 1.70 -10.72 -0.02 -3.66 16 6 C 0.07 2.65 4.17 86.30 0.36 3.01 16 7 N -0.52 -21.69 4.65 -862.58 -4.01 -25.70 16 8 C 0.04 1.29 6.70 86.44 0.58 1.87 16 9 C -0.13 -4.62 6.93 31.47 0.22 -4.41 16 10 C -0.10 -4.83 6.15 31.80 0.20 -4.63 16 11 C 0.21 10.27 1.82 44.51 0.08 10.35 16 12 H -0.03 -1.48 7.98 -2.39 -0.02 -1.49 16 13 C -0.48 -25.40 5.82 25.60 0.15 -25.25 16 14 H 0.08 3.99 4.59 -2.91 -0.01 3.98 16 15 C 0.01 0.62 5.40 84.66 0.46 1.08 16 16 N -0.93 -53.99 12.85 21.45 0.28 -53.71 16 17 Si 0.93 44.04 29.54 68.60 2.03 46.07 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.08 -2.99 4.55 30.69 0.14 -2.85 16 22 C 0.06 1.90 5.47 86.37 0.47 2.38 16 23 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.08 1.66 8.09 -2.38 -0.02 1.64 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.49 5.06 -2.39 -0.01 3.48 16 31 H 0.01 0.35 7.99 -2.39 -0.02 0.33 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.04 1.21 7.70 -2.38 -0.02 1.19 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.04 1.97 7.96 -2.39 -0.02 1.95 16 38 H 0.04 2.13 8.05 -2.39 -0.02 2.11 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.06 2.57 6.01 -2.39 -0.01 2.56 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 42 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 43 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 Total: -1.00 -59.02 319.92 -0.80 -59.82 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.94 Total: 15.28 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 4.49 Total: -21.16 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -8.27 Total: -100.01 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.02 -0.80 -59.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.757 kcal (2) G-P(sol) polarization free energy of solvation -59.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds