Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46845 * 111.00320 * 2 1 4 4 C 1.53038 * 109.52361 * 185.83780 * 3 2 1 5 5 C 1.53128 * 109.27988 * 300.82381 * 4 3 2 6 6 C 1.53112 * 109.15695 * 57.65466 * 5 4 3 7 7 H 1.09002 * 109.54103 * 62.30564 * 6 5 4 8 8 C 1.53003 * 109.50027 * 182.40573 * 6 5 4 9 9 N 1.46897 * 109.47175 * 184.80194 * 8 6 5 10 10 C 1.48818 * 111.18873 * 52.66120 * 9 8 6 11 11 C 1.54930 * 103.35132 * 159.50280 * 10 9 8 12 12 C 1.54594 * 102.92312 * 322.69562 * 11 10 9 13 13 C 1.47901 * 111.00388 * 169.99787 * 9 8 6 14 14 H 1.08999 * 109.91695 * 333.70913 * 13 9 8 15 15 C 1.50706 * 109.91817 * 94.80003 * 13 9 8 16 16 H 1.07997 * 119.99562 * 359.60684 * 15 13 9 17 17 C 1.37877 * 120.00159 * 179.60226 * 15 13 9 18 18 N 1.31510 * 119.99756 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00022 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46864 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47213 * 119.99855 * 19 17 15 22 22 H 1.48493 * 109.46786 * 240.00161 * 19 17 15 23 23 C 1.46851 * 110.99918 * 124.21542 * 2 1 3 24 24 H 1.09002 * 109.46769 * 295.78993 * 1 2 3 25 25 H 1.08999 * 109.46772 * 55.78572 * 1 2 3 26 26 H 1.08993 * 109.47231 * 175.78675 * 1 2 3 27 27 H 1.08997 * 109.46550 * 305.85827 * 3 2 1 28 28 H 1.08999 * 109.46162 * 65.83733 * 3 2 1 29 29 H 1.09003 * 109.50410 * 60.76237 * 4 3 2 30 30 H 1.09002 * 109.50381 * 180.88271 * 4 3 2 31 31 H 1.09000 * 109.51682 * 297.75130 * 5 4 3 32 32 H 1.08996 * 109.51819 * 177.55743 * 5 4 3 33 33 H 1.08997 * 109.47363 * 64.80338 * 8 6 5 34 34 H 1.08998 * 109.47257 * 304.79844 * 8 6 5 35 35 H 1.09004 * 110.51193 * 41.07281 * 10 9 8 36 36 H 1.08994 * 110.83914 * 278.09332 * 10 9 8 37 37 H 1.08999 * 110.72403 * 204.33257 * 11 10 9 38 38 H 1.09008 * 110.72261 * 81.05316 * 11 10 9 39 39 H 1.09000 * 110.30410 * 263.03819 * 12 11 10 40 40 H 1.09001 * 110.39460 * 140.91508 * 12 11 10 41 41 H 0.96998 * 119.99911 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.46140 * 54.13670 * 23 2 1 43 43 H 1.09001 * 109.44997 * 294.16676 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3340 -0.1467 5 6 4.1189 0.5367 1.0144 6 6 3.5182 -0.8716 1.0208 7 1 3.7813 -1.3844 0.0956 8 6 4.0680 -1.6561 2.2138 9 7 3.5818 -3.0410 2.1551 10 6 3.8687 -3.6562 0.8308 11 6 3.7966 -5.1767 1.1194 12 6 4.4218 -5.2911 2.5286 13 6 4.2760 -3.8890 3.1484 14 1 5.2605 -3.4752 3.3665 15 6 3.4614 -3.9692 4.4138 16 1 2.5225 -3.4404 4.4859 17 6 3.9147 -4.7177 5.4793 18 7 5.0582 -5.3612 5.3915 19 14 2.9046 -4.8177 7.0474 20 1 1.6685 -4.0092 6.8924 21 1 2.5410 -6.2328 7.3127 22 1 3.7014 -4.2898 8.1838 23 6 1.9953 -0.7709 1.1337 24 1 -0.3633 0.4471 0.9253 25 1 -0.3633 0.5778 -0.8498 26 1 -0.3633 -1.0248 -0.0755 27 1 1.5635 1.9257 -0.8329 28 1 1.7328 1.8607 0.9377 29 1 3.7815 0.8566 -1.0906 30 1 3.9101 2.3511 -0.1309 31 1 3.8887 1.0352 1.9560 32 1 5.1998 0.4711 0.8905 33 1 3.7310 -1.1917 3.1405 34 1 5.1575 -1.6518 2.1804 35 1 4.8648 -3.3766 0.4874 36 1 3.1154 -3.3676 0.0978 37 1 4.3833 -5.7358 0.3905 38 1 2.7618 -5.5191 1.1275 39 1 5.4744 -5.5643 2.4544 40 1 3.8819 -6.0264 3.1252 41 1 5.3770 -5.8881 6.1409 42 1 1.5633 -1.7716 1.1241 43 1 1.7325 -0.2708 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = -4.773666 kcal Electronic energy + Delta-G solvation = -19765.874535 eV Core-core repulsion = 17038.053229 eV Total energy + Delta-G solvation = -2727.821306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20716 -37.56352 -33.99850 -32.60529 -31.83612 -29.44436 -27.99950 -26.65844 -24.88906 -24.06109 -22.63997 -21.44927 -20.11116 -19.31103 -18.96441 -16.28697 -15.55739 -15.23724 -14.94860 -14.68418 -14.43333 -14.18499 -13.95029 -13.20585 -12.90001 -12.73766 -12.41702 -12.21740 -12.10277 -11.82304 -11.66786 -11.25512 -11.01663 -10.95297 -10.72340 -10.66568 -10.45544 -10.28132 -10.20026 -10.06858 -9.89101 -9.56477 -9.50721 -8.89141 -8.34278 -8.19911 -7.23856 -5.96368 -3.97305 3.32762 3.40645 3.45816 4.06362 4.45867 4.83187 4.96387 5.02211 5.25292 5.27867 5.35250 5.43604 5.50883 5.59200 5.63718 5.75641 5.79103 5.88286 5.89840 5.91396 5.99308 6.05433 6.11055 6.19180 6.19795 6.31542 6.37538 6.44178 6.59376 6.66258 6.71399 6.78025 7.11131 7.20056 7.22533 7.25268 7.39949 7.64332 7.92749 8.16692 8.29398 8.60257 9.09588 9.66234 11.12726 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.005784 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.227205 B = 4839.608412 C = 5176.131327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.082 4.082 7 H 0.076 0.924 8 C 0.062 3.938 9 N -0.510 5.510 10 C 0.036 3.964 11 C -0.128 4.128 12 C -0.097 4.097 13 C 0.200 3.800 14 H 0.008 0.992 15 C -0.490 4.490 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.070 3.930 24 H 0.022 0.978 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.258 0.742 42 H 0.089 0.911 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 10.182 -10.702 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.101 4.101 7 H 0.094 0.906 8 C -0.068 4.068 9 N -0.234 5.234 10 C -0.092 4.092 11 C -0.166 4.166 12 C -0.136 4.136 13 C 0.094 3.906 14 H 0.026 0.974 15 C -0.529 4.529 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.213 1.213 23 C -0.057 4.057 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.279 9.868 -10.902 15.314 hybrid contribution 0.212 0.267 1.582 1.618 sum -4.067 10.134 -9.320 14.356 Atomic orbital electron populations 1.22308 0.87709 1.02246 0.99849 1.61953 1.07234 1.13217 1.44737 1.22069 0.95721 0.89658 0.99830 1.21558 0.94449 0.99709 0.99475 1.21631 0.99825 0.95908 0.98207 1.21277 0.94522 0.94926 0.99402 0.90591 1.22150 0.96323 0.90892 0.97405 1.64882 1.55054 1.00645 1.02827 1.23152 0.97783 0.94915 0.93360 1.22535 1.00612 0.95019 0.98467 1.22288 0.98286 1.00357 0.92642 1.19979 0.92612 0.88227 0.89793 0.97415 1.21140 1.06149 1.28838 0.96744 0.91954 1.24959 0.95158 0.95865 0.98588 1.69995 1.19951 1.32123 1.31452 0.86517 0.80328 0.77685 0.83346 1.19779 1.21146 1.21273 1.22070 0.95058 0.98612 0.89938 0.95958 0.91953 0.91246 0.91409 0.95274 0.91327 0.91953 0.92261 0.91998 0.91068 0.95679 0.95529 0.91662 0.93235 0.91983 0.94232 0.91267 0.93210 0.89258 0.95200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.59 60.07 0.58 0.89 16 2 N -0.55 -7.36 4.91 -242.96 -1.19 -8.55 16 3 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 4 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 5 C -0.12 -1.54 5.29 -26.61 -0.14 -1.68 16 6 C -0.08 -1.26 2.04 -90.54 -0.19 -1.45 16 7 H 0.08 1.21 6.54 -51.93 -0.34 0.87 16 8 C 0.06 1.16 4.43 -3.82 -0.02 1.15 16 9 N -0.51 -10.88 4.49 -223.71 -1.00 -11.88 16 10 C 0.04 0.68 5.10 -1.74 -0.01 0.67 16 11 C -0.13 -2.51 7.06 -24.87 -0.18 -2.69 16 12 C -0.10 -2.31 5.65 -25.38 -0.14 -2.46 16 13 C 0.20 5.07 2.41 -67.80 -0.16 4.90 16 14 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 15 C -0.49 -13.59 8.69 -34.44 -0.30 -13.89 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.06 1.54 5.09 -17.82 -0.09 1.45 16 18 N -0.90 -25.89 12.39 55.43 0.69 -25.20 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.07 1.09 4.62 -3.83 -0.02 1.07 16 24 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.03 0.49 7.81 -51.93 -0.41 0.08 16 35 H 0.03 0.49 8.01 -51.93 -0.42 0.07 16 36 H 0.07 1.13 7.59 -51.93 -0.39 0.74 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.82 7.27 -51.93 -0.38 1.44 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.09 1.53 7.76 -51.93 -0.40 1.13 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -28.46 326.73 -10.64 -39.10 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.19 Total: -2.13 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.85 Total: -12.86 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -1.51 Total: -45.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.46 -10.64 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.328 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds