Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46845 * 111.00320 * 2 1 4 4 C 1.53038 * 109.52361 * 185.83780 * 3 2 1 5 5 C 1.53128 * 109.27988 * 300.82381 * 4 3 2 6 6 C 1.53112 * 109.15695 * 57.65466 * 5 4 3 7 7 H 1.09002 * 109.54103 * 62.30564 * 6 5 4 8 8 C 1.53003 * 109.50027 * 182.40573 * 6 5 4 9 9 N 1.46897 * 109.47175 * 184.80194 * 8 6 5 10 10 C 1.48818 * 111.18873 * 52.66120 * 9 8 6 11 11 C 1.54930 * 103.35132 * 159.50280 * 10 9 8 12 12 C 1.54594 * 102.92312 * 322.69562 * 11 10 9 13 13 C 1.47901 * 111.00388 * 169.99787 * 9 8 6 14 14 H 1.08999 * 109.91695 * 333.70913 * 13 9 8 15 15 C 1.50706 * 109.91817 * 94.80003 * 13 9 8 16 16 H 1.07997 * 119.99562 * 359.60684 * 15 13 9 17 17 C 1.37877 * 120.00159 * 179.60226 * 15 13 9 18 18 N 1.31510 * 119.99756 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00022 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46864 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47213 * 119.99855 * 19 17 15 22 22 H 1.48493 * 109.46786 * 240.00161 * 19 17 15 23 23 C 1.46851 * 110.99918 * 124.21542 * 2 1 3 24 24 H 1.09002 * 109.46769 * 295.78993 * 1 2 3 25 25 H 1.08999 * 109.46772 * 55.78572 * 1 2 3 26 26 H 1.08993 * 109.47231 * 175.78675 * 1 2 3 27 27 H 1.08997 * 109.46550 * 305.85827 * 3 2 1 28 28 H 1.08999 * 109.46162 * 65.83733 * 3 2 1 29 29 H 1.09003 * 109.50410 * 60.76237 * 4 3 2 30 30 H 1.09002 * 109.50381 * 180.88271 * 4 3 2 31 31 H 1.09000 * 109.51682 * 297.75130 * 5 4 3 32 32 H 1.08996 * 109.51819 * 177.55743 * 5 4 3 33 33 H 1.08997 * 109.47363 * 64.80338 * 8 6 5 34 34 H 1.08998 * 109.47257 * 304.79844 * 8 6 5 35 35 H 1.09004 * 110.51193 * 41.07281 * 10 9 8 36 36 H 1.08994 * 110.83914 * 278.09332 * 10 9 8 37 37 H 1.08999 * 110.72403 * 204.33257 * 11 10 9 38 38 H 1.09008 * 110.72261 * 81.05316 * 11 10 9 39 39 H 1.09000 * 110.30410 * 263.03819 * 12 11 10 40 40 H 1.09001 * 110.39460 * 140.91508 * 12 11 10 41 41 H 0.96998 * 119.99911 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.46140 * 54.13670 * 23 2 1 43 43 H 1.09001 * 109.44997 * 294.16676 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3340 -0.1467 5 6 4.1189 0.5367 1.0144 6 6 3.5182 -0.8716 1.0208 7 1 3.7813 -1.3844 0.0956 8 6 4.0680 -1.6561 2.2138 9 7 3.5818 -3.0410 2.1551 10 6 3.8687 -3.6562 0.8308 11 6 3.7966 -5.1767 1.1194 12 6 4.4218 -5.2911 2.5286 13 6 4.2760 -3.8890 3.1484 14 1 5.2605 -3.4752 3.3665 15 6 3.4614 -3.9692 4.4138 16 1 2.5225 -3.4404 4.4859 17 6 3.9147 -4.7177 5.4793 18 7 5.0582 -5.3612 5.3915 19 14 2.9046 -4.8177 7.0474 20 1 1.6685 -4.0092 6.8924 21 1 2.5410 -6.2328 7.3127 22 1 3.7014 -4.2898 8.1838 23 6 1.9953 -0.7709 1.1337 24 1 -0.3633 0.4471 0.9253 25 1 -0.3633 0.5778 -0.8498 26 1 -0.3633 -1.0248 -0.0755 27 1 1.5635 1.9257 -0.8329 28 1 1.7328 1.8607 0.9377 29 1 3.7815 0.8566 -1.0906 30 1 3.9101 2.3511 -0.1309 31 1 3.8887 1.0352 1.9560 32 1 5.1998 0.4711 0.8905 33 1 3.7310 -1.1917 3.1405 34 1 5.1575 -1.6518 2.1804 35 1 4.8648 -3.3766 0.4874 36 1 3.1154 -3.3676 0.0978 37 1 4.3833 -5.7358 0.3905 38 1 2.7618 -5.5191 1.1275 39 1 5.4744 -5.5643 2.4544 40 1 3.8819 -6.0264 3.1252 41 1 5.3770 -5.8881 6.1409 42 1 1.5633 -1.7716 1.1241 43 1 1.7325 -0.2708 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = -22.693711 kcal Electronic energy + Delta-G solvation = -19766.651606 eV Core-core repulsion = 17038.053229 eV Total energy + Delta-G solvation = -2728.598377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49875 -39.09559 -35.36429 -34.47820 -33.15834 -30.93364 -29.88513 -27.67081 -26.54843 -25.82625 -23.69736 -22.81303 -21.55272 -21.13376 -20.27816 -18.34737 -16.83295 -16.76191 -16.53351 -16.15568 -15.73483 -15.46329 -15.26956 -14.74852 -14.26455 -14.18489 -13.95058 -13.64088 -13.34214 -13.16678 -13.07915 -12.94202 -12.54840 -12.43640 -12.34938 -12.19693 -11.99976 -11.82480 -11.76639 -11.55794 -11.29149 -11.20109 -11.06140 -10.88159 -10.48106 -9.24967 -9.01474 -8.11715 -6.20354 1.38932 1.40539 1.52866 2.42297 3.03075 3.17356 3.38375 3.89277 3.92750 3.99253 4.12085 4.17907 4.28644 4.35457 4.45533 4.54718 4.58390 4.61374 4.70154 4.71387 4.77324 4.84585 4.87588 4.93189 4.96168 5.02771 5.03903 5.06192 5.13456 5.22572 5.32241 5.32769 5.39578 5.47485 5.54077 5.69513 5.74799 6.14712 6.19941 6.24460 6.52268 6.59389 6.91962 7.47359 8.96460 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.005784 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.227205 B = 4839.608412 C = 5176.131327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.052 3.948 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.070 4.070 7 H 0.077 0.923 8 C 0.066 3.934 9 N -0.517 5.517 10 C 0.042 3.958 11 C -0.118 4.118 12 C -0.092 4.092 13 C 0.201 3.799 14 H -0.030 1.030 15 C -0.506 4.506 16 H 0.051 0.949 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.281 1.281 23 C 0.079 3.921 24 H 0.020 0.980 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.039 0.961 41 H 0.260 0.740 42 H 0.069 0.931 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 11.326 -12.261 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.075 4.075 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.089 4.089 7 H 0.096 0.904 8 C -0.064 4.064 9 N -0.241 5.241 10 C -0.086 4.086 11 C -0.156 4.156 12 C -0.131 4.131 13 C 0.094 3.906 14 H -0.012 1.012 15 C -0.545 4.545 16 H 0.069 0.931 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.207 1.207 23 C -0.048 4.048 24 H 0.038 0.962 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.205 11.025 -12.480 17.447 hybrid contribution 0.506 -0.063 2.061 2.123 sum -4.699 10.962 -10.419 15.837 Atomic orbital electron populations 1.22371 0.86594 1.02509 1.00716 1.61971 1.08354 1.14212 1.43191 1.22187 0.96064 0.88700 1.00589 1.21542 0.94067 1.00629 0.98317 1.21626 1.00195 0.94490 0.99136 1.21149 0.94627 0.95876 0.97278 0.90422 1.22129 0.95829 0.90014 0.98387 1.64796 1.54632 1.01349 1.03371 1.23196 0.98968 0.94090 0.92318 1.22504 1.00920 0.96065 0.96100 1.22092 0.97460 0.98515 0.95072 1.19802 0.90654 0.89606 0.90545 1.01210 1.21368 1.05967 1.28829 0.98300 0.93099 1.25710 0.96173 0.95461 1.01628 1.70106 1.21262 1.32632 1.32377 0.85522 0.78883 0.77849 0.79486 1.19409 1.20451 1.20711 1.21853 0.94859 0.97849 0.90288 0.96164 0.89718 0.91603 0.89207 0.95603 0.91111 0.89612 0.92725 0.91446 0.93145 0.96566 0.94764 0.89313 0.90231 0.91535 0.95431 0.94229 0.93088 0.91280 0.96719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.59 127.69 1.22 1.78 16 2 N -0.55 -13.72 4.91 -922.58 -4.53 -18.25 16 3 C 0.05 1.07 5.46 86.33 0.47 1.55 16 4 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 5 C -0.12 -2.87 5.29 30.67 0.16 -2.70 16 6 C -0.07 -2.10 2.04 -10.74 -0.02 -2.13 16 7 H 0.08 2.33 6.54 -2.39 -0.02 2.31 16 8 C 0.07 2.53 4.43 86.30 0.38 2.91 16 9 N -0.52 -22.38 4.49 -861.68 -3.87 -26.25 16 10 C 0.04 1.52 5.10 86.59 0.44 1.97 16 11 C -0.12 -4.48 7.06 31.80 0.22 -4.26 16 12 C -0.09 -4.52 5.65 31.47 0.18 -4.34 16 13 C 0.20 10.55 2.41 44.31 0.11 10.65 16 14 H -0.03 -1.75 7.57 -2.39 -0.02 -1.76 16 15 C -0.51 -28.98 8.69 25.60 0.22 -28.75 16 16 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 17 C 0.01 0.48 5.09 84.66 0.43 0.91 16 18 N -0.92 -54.81 12.39 21.45 0.27 -54.54 16 19 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.08 2.39 4.62 86.33 0.40 2.79 16 24 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.02 0.65 7.81 -2.39 -0.02 0.63 16 35 H 0.03 1.20 8.01 -2.38 -0.02 1.18 16 36 H 0.09 2.86 7.59 -2.39 -0.02 2.84 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 2.13 7.27 -2.39 -0.02 2.11 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.07 2.35 7.76 -2.39 -0.02 2.33 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -62.61 326.73 -0.77 -63.37 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.93 Total: 10.13 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 4.41 Total: -21.55 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -8.13 Total: -99.05 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -62.61 -0.77 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.680 kcal (2) G-P(sol) polarization free energy of solvation -62.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds