Wall clock time and date at job start Mon Mar 30 2020 04:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46847 * 111.00212 * 2 1 4 4 C 1.53031 * 109.52441 * 185.83978 * 3 2 1 5 5 C 1.53125 * 109.27808 * 300.81862 * 4 3 2 6 6 C 1.53119 * 109.15941 * 57.65774 * 5 4 3 7 7 H 1.09000 * 109.50173 * 62.32270 * 6 5 4 8 8 C 1.52998 * 109.50298 * 182.40426 * 6 5 4 9 9 N 1.46901 * 109.47145 * 182.43659 * 8 6 5 10 10 C 1.48557 * 110.99915 * 191.96214 * 9 8 6 11 11 C 1.54379 * 104.59282 * 200.95963 * 10 9 8 12 12 C 1.54255 * 105.06156 * 23.85644 * 11 10 9 13 13 C 1.48561 * 110.99792 * 76.54649 * 9 8 6 14 14 H 1.09002 * 110.41079 * 40.26205 * 13 9 8 15 15 C 1.50700 * 110.51176 * 277.87075 * 13 9 8 16 16 H 1.08003 * 119.99895 * 1.71128 * 15 13 9 17 17 C 1.37878 * 119.99838 * 181.72264 * 15 13 9 18 18 N 1.31518 * 119.99810 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 120.00133 * 359.97438 * 17 15 13 20 20 H 1.48498 * 109.46885 * 90.00457 * 19 17 15 21 21 H 1.48503 * 109.47083 * 210.00244 * 19 17 15 22 22 H 1.48494 * 109.47367 * 330.00698 * 19 17 15 23 23 C 1.46847 * 110.99474 * 124.25057 * 2 1 3 24 24 H 1.08999 * 109.47074 * 63.95873 * 1 2 3 25 25 H 1.09005 * 109.47143 * 183.95452 * 1 2 3 26 26 H 1.08999 * 109.47138 * 303.95529 * 1 2 3 27 27 H 1.09000 * 109.46181 * 65.82300 * 3 2 1 28 28 H 1.09003 * 109.46085 * 305.85371 * 3 2 1 29 29 H 1.09005 * 109.50227 * 180.88175 * 4 3 2 30 30 H 1.09003 * 109.50824 * 60.76210 * 4 3 2 31 31 H 1.08996 * 109.52278 * 297.75209 * 5 4 3 32 32 H 1.09002 * 109.57109 * 177.59020 * 5 4 3 33 33 H 1.09002 * 109.47260 * 62.43673 * 8 6 5 34 34 H 1.09005 * 109.47113 * 302.44074 * 8 6 5 35 35 H 1.09003 * 110.41089 * 82.18188 * 10 9 8 36 36 H 1.09000 * 110.51612 * 319.79291 * 10 9 8 37 37 H 1.09005 * 110.32564 * 264.95513 * 11 10 9 38 38 H 1.09007 * 110.32084 * 142.75543 * 11 10 9 39 39 H 1.09004 * 110.32510 * 241.09820 * 12 11 10 40 40 H 1.09007 * 110.32416 * 118.89561 * 12 11 10 41 41 H 0.96998 * 120.00018 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.49788 * 54.16312 * 23 2 1 43 43 H 1.08994 * 109.43181 * 294.19561 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 3.5181 -0.8715 1.0209 7 1 3.7819 -1.3839 0.0957 8 6 4.0680 -1.6559 2.2139 9 7 3.5367 -3.0252 2.1865 10 6 3.8103 -3.7281 3.4663 11 6 3.7075 -5.2281 3.1160 12 6 3.9858 -5.3058 1.6007 13 6 4.2334 -3.8462 1.1630 14 1 5.3009 -3.6257 1.1610 15 6 3.6444 -3.5998 -0.2021 16 1 2.8468 -2.8819 -0.3245 17 6 4.1236 -4.2909 -1.2946 18 7 3.6092 -4.0762 -2.4859 19 14 5.5034 -5.5322 -1.0830 20 1 4.9258 -6.8710 -0.8018 21 1 6.3101 -5.5927 -2.3283 22 1 6.3710 -5.1197 0.0494 23 6 1.9951 -0.7716 1.1332 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3634 -1.0253 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 1.7325 1.8608 0.9376 28 1 1.5634 1.9257 -0.8330 29 1 3.9099 2.3512 -0.1310 30 1 3.7814 0.8567 -1.0906 31 1 3.8886 1.0354 1.9560 32 1 5.1999 0.4713 0.8916 33 1 3.7659 -1.1674 3.1403 34 1 5.1561 -1.6871 2.1578 35 1 3.0639 -3.4603 4.2142 36 1 4.8109 -3.4895 3.8268 37 1 2.7073 -5.6008 3.3368 38 1 4.4551 -5.7978 3.6680 39 1 3.1222 -5.7167 1.0777 40 1 4.8701 -5.9137 1.4089 41 1 3.9466 -4.5621 -3.2546 42 1 1.5638 -1.7726 1.1233 43 1 1.7317 -0.2721 2.0655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:24 Heat of formation + Delta-G solvation = 6.162806 kcal Electronic energy + Delta-G solvation = -20285.970524 eV Core-core repulsion = 17558.623460 eV Total energy + Delta-G solvation = -2727.347065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.96867 -37.66426 -33.70495 -32.47319 -31.85869 -29.40643 -28.83447 -26.31619 -24.85352 -23.82552 -22.34251 -21.02790 -20.33298 -19.45709 -18.78821 -16.60267 -15.32867 -15.21551 -15.03646 -14.55039 -14.07378 -13.97062 -13.52638 -13.36625 -12.82796 -12.61868 -12.50974 -12.31487 -11.98623 -11.84395 -11.56295 -11.16360 -11.12651 -10.91815 -10.66737 -10.56768 -10.39078 -10.22953 -9.88576 -9.82296 -9.75469 -9.64039 -9.44906 -8.89522 -8.43009 -7.74316 -7.47907 -5.95319 -3.91933 3.32197 3.40831 3.41706 4.44441 4.48218 4.81827 5.26946 5.27582 5.33957 5.43135 5.52932 5.56645 5.64151 5.73239 5.77826 5.81152 5.94787 5.96524 6.07539 6.09068 6.11944 6.19511 6.25235 6.28218 6.31419 6.40609 6.43347 6.45674 6.54291 6.66522 6.69663 6.79209 6.83271 7.00772 7.26249 7.38241 7.64449 7.69334 7.74179 7.88298 8.07719 8.73012 9.19255 9.66580 11.16288 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.008521 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.725305 B = 3285.077059 C = 3932.447394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.537 5.537 3 C 0.060 3.940 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.091 4.091 7 H 0.125 0.875 8 C 0.065 3.935 9 N -0.496 5.496 10 C 0.031 3.969 11 C -0.121 4.121 12 C -0.134 4.134 13 C 0.169 3.831 14 H 0.007 0.993 15 C -0.495 4.495 16 H 0.100 0.900 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.867 3.133 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.270 1.270 23 C 0.081 3.919 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.261 0.739 42 H 0.093 0.907 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 6.919 8.691 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.261 5.261 3 C -0.068 4.068 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.110 4.110 7 H 0.142 0.858 8 C -0.065 4.065 9 N -0.219 5.219 10 C -0.098 4.098 11 C -0.160 4.160 12 C -0.172 4.172 13 C 0.062 3.938 14 H 0.024 0.976 15 C -0.533 4.533 16 H 0.117 0.883 17 C -0.128 4.128 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.195 1.195 23 C -0.046 4.046 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -1.464 6.694 7.957 10.501 hybrid contribution 1.448 -0.432 1.006 1.815 sum -0.016 6.262 8.963 10.934 Atomic orbital electron populations 1.22282 0.88060 1.01847 0.99554 1.61803 1.06762 1.12624 1.44903 1.22024 0.95842 0.89832 0.99140 1.21540 0.94397 0.99159 1.00154 1.21616 0.99735 0.96565 0.97353 1.21443 0.93861 0.93786 1.01884 0.85773 1.22049 0.96357 0.90659 0.97411 1.65323 1.53327 1.00816 1.02474 1.23014 0.98212 0.94558 0.93983 1.22255 1.00722 0.95438 0.97544 1.22799 1.00750 0.99742 0.93931 1.20763 0.92425 0.88088 0.92570 0.97589 1.21062 1.20365 1.23829 0.88012 0.88276 1.24866 0.96044 0.96567 0.95322 1.69896 1.42200 1.42267 0.98925 0.87130 0.83474 0.82834 0.76969 1.20446 1.22114 1.19520 1.21974 0.95706 0.98334 0.88572 0.92030 0.91235 0.96766 0.96031 0.91626 0.92478 0.90634 0.93529 0.92385 0.93112 0.95486 0.91577 0.95359 0.91871 0.92973 0.90672 0.93859 0.92877 0.88899 0.97159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.62 60.06 0.58 1.05 16 2 N -0.54 -9.58 4.91 -242.96 -1.19 -10.77 16 3 C 0.06 0.91 5.46 -3.84 -0.02 0.89 16 4 C -0.11 -1.74 6.09 -26.65 -0.16 -1.90 16 5 C -0.11 -1.82 5.29 -26.61 -0.14 -1.96 16 6 C -0.09 -1.72 1.89 -90.54 -0.17 -1.89 16 7 H 0.12 2.92 5.21 -51.93 -0.27 2.65 16 8 C 0.06 1.19 4.26 -3.82 -0.02 1.18 16 9 N -0.50 -10.06 4.43 -223.50 -0.99 -11.05 16 10 C 0.03 0.54 6.44 -2.18 -0.01 0.52 16 11 C -0.12 -2.13 7.00 -25.35 -0.18 -2.31 16 12 C -0.13 -2.88 4.91 -25.35 -0.12 -3.00 16 13 C 0.17 3.94 1.71 -67.22 -0.11 3.82 16 14 H 0.01 0.16 6.77 -51.93 -0.35 -0.19 16 15 C -0.49 -13.32 7.36 -34.44 -0.25 -13.58 16 16 H 0.10 2.90 5.76 -52.48 -0.30 2.60 16 17 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 18 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 19 Si 0.87 21.52 24.75 -169.99 -4.21 17.32 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.27 -6.51 6.39 56.52 0.36 -6.15 16 23 C 0.08 1.51 4.23 -3.83 -0.02 1.49 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.92 8.12 -51.93 -0.42 0.49 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.03 0.51 7.72 -51.93 -0.40 0.11 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.72 7.85 -51.93 -0.41 1.31 16 40 H 0.04 0.93 5.88 -51.93 -0.31 0.62 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.09 1.96 7.14 -51.93 -0.37 1.59 16 43 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -28.79 314.78 -9.51 -38.31 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.91 Total: 1.30 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.73 Total: -13.71 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -1.41 Total: -47.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.21 Total: 17.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.79 -9.51 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.470 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds