Wall clock time and date at job start Mon Mar 30 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46847 * 111.00212 * 2 1 4 4 C 1.53031 * 109.52441 * 185.83978 * 3 2 1 5 5 C 1.53125 * 109.27808 * 300.81862 * 4 3 2 6 6 C 1.53119 * 109.15941 * 57.65774 * 5 4 3 7 7 H 1.09000 * 109.50173 * 62.32270 * 6 5 4 8 8 C 1.52998 * 109.50298 * 182.40426 * 6 5 4 9 9 N 1.46901 * 109.47145 * 182.43659 * 8 6 5 10 10 C 1.48557 * 110.99915 * 191.96214 * 9 8 6 11 11 C 1.54379 * 104.59282 * 200.95963 * 10 9 8 12 12 C 1.54255 * 105.06156 * 23.85644 * 11 10 9 13 13 C 1.48561 * 110.99792 * 76.54649 * 9 8 6 14 14 H 1.09002 * 110.41079 * 40.26205 * 13 9 8 15 15 C 1.50700 * 110.51176 * 277.87075 * 13 9 8 16 16 H 1.08003 * 119.99895 * 1.71128 * 15 13 9 17 17 C 1.37878 * 119.99838 * 181.72264 * 15 13 9 18 18 N 1.31518 * 119.99810 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 120.00133 * 359.97438 * 17 15 13 20 20 H 1.48498 * 109.46885 * 90.00457 * 19 17 15 21 21 H 1.48503 * 109.47083 * 210.00244 * 19 17 15 22 22 H 1.48494 * 109.47367 * 330.00698 * 19 17 15 23 23 C 1.46847 * 110.99474 * 124.25057 * 2 1 3 24 24 H 1.08999 * 109.47074 * 63.95873 * 1 2 3 25 25 H 1.09005 * 109.47143 * 183.95452 * 1 2 3 26 26 H 1.08999 * 109.47138 * 303.95529 * 1 2 3 27 27 H 1.09000 * 109.46181 * 65.82300 * 3 2 1 28 28 H 1.09003 * 109.46085 * 305.85371 * 3 2 1 29 29 H 1.09005 * 109.50227 * 180.88175 * 4 3 2 30 30 H 1.09003 * 109.50824 * 60.76210 * 4 3 2 31 31 H 1.08996 * 109.52278 * 297.75209 * 5 4 3 32 32 H 1.09002 * 109.57109 * 177.59020 * 5 4 3 33 33 H 1.09002 * 109.47260 * 62.43673 * 8 6 5 34 34 H 1.09005 * 109.47113 * 302.44074 * 8 6 5 35 35 H 1.09003 * 110.41089 * 82.18188 * 10 9 8 36 36 H 1.09000 * 110.51612 * 319.79291 * 10 9 8 37 37 H 1.09005 * 110.32564 * 264.95513 * 11 10 9 38 38 H 1.09007 * 110.32084 * 142.75543 * 11 10 9 39 39 H 1.09004 * 110.32510 * 241.09820 * 12 11 10 40 40 H 1.09007 * 110.32416 * 118.89561 * 12 11 10 41 41 H 0.96998 * 120.00018 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.49788 * 54.16312 * 23 2 1 43 43 H 1.08994 * 109.43181 * 294.19561 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 3.5181 -0.8715 1.0209 7 1 3.7819 -1.3839 0.0957 8 6 4.0680 -1.6559 2.2139 9 7 3.5367 -3.0252 2.1865 10 6 3.8103 -3.7281 3.4663 11 6 3.7075 -5.2281 3.1160 12 6 3.9858 -5.3058 1.6007 13 6 4.2334 -3.8462 1.1630 14 1 5.3009 -3.6257 1.1610 15 6 3.6444 -3.5998 -0.2021 16 1 2.8468 -2.8819 -0.3245 17 6 4.1236 -4.2909 -1.2946 18 7 3.6092 -4.0762 -2.4859 19 14 5.5034 -5.5322 -1.0830 20 1 4.9258 -6.8710 -0.8018 21 1 6.3101 -5.5927 -2.3283 22 1 6.3710 -5.1197 0.0494 23 6 1.9951 -0.7716 1.1332 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3634 -1.0253 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 1.7325 1.8608 0.9376 28 1 1.5634 1.9257 -0.8330 29 1 3.9099 2.3512 -0.1310 30 1 3.7814 0.8567 -1.0906 31 1 3.8886 1.0354 1.9560 32 1 5.1999 0.4713 0.8916 33 1 3.7659 -1.1674 3.1403 34 1 5.1561 -1.6871 2.1578 35 1 3.0639 -3.4603 4.2142 36 1 4.8109 -3.4895 3.8268 37 1 2.7073 -5.6008 3.3368 38 1 4.4551 -5.7978 3.6680 39 1 3.1222 -5.7167 1.0777 40 1 4.8701 -5.9137 1.4089 41 1 3.9466 -4.5621 -3.2546 42 1 1.5638 -1.7726 1.1233 43 1 1.7317 -0.2721 2.0655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:23 Heat of formation + Delta-G solvation = -13.937655 kcal Electronic energy + Delta-G solvation = -20286.842146 eV Core-core repulsion = 17558.623460 eV Total energy + Delta-G solvation = -2728.218686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44081 -39.14530 -35.11784 -34.56121 -33.22116 -30.98145 -30.55429 -27.60670 -26.39537 -25.61583 -23.68625 -22.52908 -21.82101 -21.08912 -20.25929 -18.62945 -16.91970 -16.72653 -16.59111 -16.03128 -15.39781 -15.38058 -15.20156 -15.01261 -14.54212 -14.18367 -14.01223 -13.68435 -13.43409 -13.25239 -13.00104 -12.91451 -12.55398 -12.42599 -12.31109 -12.14565 -11.94815 -11.77551 -11.61534 -11.48820 -11.15974 -11.11070 -11.00961 -10.87956 -10.54067 -9.07777 -9.05011 -8.14002 -6.12517 1.32361 1.34845 1.42497 2.39157 3.15558 3.16254 3.33482 3.94002 4.02231 4.03272 4.11645 4.18380 4.25487 4.31825 4.49876 4.55485 4.59677 4.63290 4.64925 4.72485 4.75792 4.84415 4.85183 4.92690 4.95992 5.02914 5.05053 5.06815 5.09974 5.13282 5.18230 5.32905 5.39244 5.47619 5.56891 5.75802 5.84355 6.08289 6.34755 6.39145 6.49289 6.68350 6.97966 7.48556 9.01289 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.008521 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.725305 B = 3285.077059 C = 3932.447394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.571 5.571 3 C 0.061 3.939 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.088 4.088 7 H 0.069 0.931 8 C 0.066 3.934 9 N -0.511 5.511 10 C 0.031 3.969 11 C -0.114 4.114 12 C -0.136 4.136 13 C 0.170 3.830 14 H -0.006 1.006 15 C -0.480 4.480 16 H 0.064 0.936 17 C 0.015 3.985 18 N -0.946 5.946 19 Si 0.925 3.075 20 H -0.269 1.269 21 H -0.298 1.298 22 H -0.256 1.256 23 C 0.095 3.905 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.022 0.978 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.260 0.740 42 H 0.056 0.944 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 7.691 11.594 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.296 5.296 3 C -0.067 4.067 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.107 4.107 7 H 0.087 0.913 8 C -0.063 4.063 9 N -0.234 5.234 10 C -0.097 4.097 11 C -0.152 4.152 12 C -0.175 4.175 13 C 0.062 3.938 14 H 0.011 0.989 15 C -0.518 4.518 16 H 0.082 0.918 17 C -0.181 4.181 18 N -0.588 5.588 19 Si 0.752 3.248 20 H -0.194 1.194 21 H -0.226 1.226 22 H -0.180 1.180 23 C -0.033 4.033 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.872 7.469 10.895 13.239 hybrid contribution 1.184 -0.585 0.108 1.325 sum 0.313 6.884 11.003 12.983 Atomic orbital electron populations 1.22269 0.86807 1.01376 1.01023 1.61760 1.08279 1.14455 1.45075 1.22082 0.95572 0.88463 1.00552 1.21551 0.94788 1.00495 0.98300 1.21575 0.99591 0.94746 0.98822 1.21279 0.94539 0.95344 0.99562 0.91278 1.22092 0.95968 0.89883 0.98331 1.65239 1.53315 1.01561 1.03327 1.23141 0.99847 0.93946 0.92790 1.22257 1.02410 0.96182 0.94326 1.22670 0.99875 0.97860 0.97092 1.20553 0.91379 0.90201 0.91663 0.98894 1.21256 1.18609 1.21729 0.90209 0.91809 1.25589 0.98665 0.98853 0.95017 1.70054 1.44529 1.44297 0.99876 0.86181 0.80785 0.80855 0.77008 1.19406 1.22564 1.17992 1.21700 0.95136 0.96825 0.89605 0.90940 0.92831 0.94667 0.94155 0.90437 0.89210 0.93788 0.91001 0.92288 0.90193 0.95941 0.89077 0.93986 0.90691 0.90118 0.92942 0.93632 0.93142 0.92559 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.62 127.69 1.23 2.23 16 2 N -0.57 -20.45 4.91 -922.60 -4.53 -24.98 16 3 C 0.06 1.75 5.46 86.32 0.47 2.22 16 4 C -0.11 -3.31 6.09 30.65 0.19 -3.13 16 5 C -0.11 -3.31 5.29 30.68 0.16 -3.15 16 6 C -0.09 -3.35 1.89 -10.74 -0.02 -3.38 16 7 H 0.07 3.43 5.21 -2.39 -0.01 3.42 16 8 C 0.07 2.36 4.26 86.30 0.37 2.73 16 9 N -0.51 -20.22 4.43 -861.02 -3.82 -24.04 16 10 C 0.03 0.96 6.44 86.45 0.56 1.52 16 11 C -0.11 -3.62 7.00 31.49 0.22 -3.40 16 12 C -0.14 -5.72 4.91 31.49 0.15 -5.56 16 13 C 0.17 7.94 1.71 44.32 0.08 8.01 16 14 H -0.01 -0.31 6.77 -2.39 -0.02 -0.33 16 15 C -0.48 -26.98 7.36 25.60 0.19 -26.79 16 16 H 0.06 4.00 5.76 -2.91 -0.02 3.98 16 17 C 0.02 0.89 5.46 84.65 0.46 1.36 16 18 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 19 Si 0.92 45.32 24.75 68.60 1.70 47.02 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 22 H -0.26 -11.79 6.39 99.48 0.64 -11.16 16 23 C 0.09 3.53 4.23 86.33 0.36 3.89 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 1.75 8.02 -2.38 -0.02 1.73 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 29 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.38 8.06 -2.39 -0.02 2.36 16 34 H 0.02 0.82 7.72 -2.38 -0.02 0.80 16 35 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 37 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.05 2.40 7.85 -2.38 -0.02 2.38 16 40 H 0.05 1.86 5.88 -2.38 -0.01 1.85 16 41 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.06 2.47 7.14 -2.39 -0.02 2.46 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.83 314.78 -1.06 -66.89 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.87 Total: 18.15 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 4.42 Total: -23.45 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -8.05 Total: -108.61 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.70 Total: 47.02 kcal Total: -65.83 -1.06 -66.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.952 kcal (2) G-P(sol) polarization free energy of solvation -65.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds