Wall clock time and date at job start Mon Mar 30 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46844 * 111.00138 * 2 1 4 4 C 1.53037 * 109.52520 * 174.16065 * 3 2 1 5 5 C 1.53114 * 109.27606 * 59.18012 * 4 3 2 6 6 C 1.53118 * 109.16281 * 302.34693 * 5 4 3 7 7 H 1.08997 * 109.50693 * 297.67582 * 6 5 4 8 8 C 1.53003 * 109.50382 * 177.59486 * 6 5 4 9 9 N 1.46906 * 109.47099 * 174.99935 * 8 6 5 10 10 C 1.47844 * 110.99835 * 291.02366 * 9 8 6 11 11 C 1.54914 * 104.79079 * 213.63475 * 10 9 8 12 12 C 1.55136 * 101.65453 * 37.07307 * 11 10 9 13 13 C 1.47445 * 110.99772 * 170.17564 * 9 8 6 14 14 H 1.08997 * 109.88616 * 242.66394 * 13 9 8 15 15 C 1.50696 * 109.89044 * 3.69350 * 13 9 8 16 16 H 1.07997 * 120.00232 * 65.07029 * 15 13 9 17 17 C 1.37878 * 120.00001 * 245.06836 * 15 13 9 18 18 N 1.31519 * 119.99676 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00253 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46557 * 90.00199 * 19 17 15 21 21 H 1.48491 * 109.47317 * 210.00188 * 19 17 15 22 22 H 1.48502 * 109.47063 * 330.00687 * 19 17 15 23 23 C 1.46845 * 110.99563 * 235.79121 * 2 1 3 24 24 H 1.08995 * 109.47314 * 56.04146 * 1 2 3 25 25 H 1.08998 * 109.47313 * 176.04204 * 1 2 3 26 26 H 1.09002 * 109.47180 * 296.04233 * 1 2 3 27 27 H 1.09005 * 109.46110 * 54.14380 * 3 2 1 28 28 H 1.08995 * 109.46195 * 294.18378 * 3 2 1 29 29 H 1.08997 * 109.50476 * 299.24276 * 4 3 2 30 30 H 1.09000 * 109.50414 * 179.12455 * 4 3 2 31 31 H 1.09005 * 109.52598 * 182.43979 * 5 4 3 32 32 H 1.09001 * 109.57492 * 62.28112 * 5 4 3 33 33 H 1.09001 * 109.47275 * 55.00169 * 8 6 5 34 34 H 1.09005 * 109.47044 * 294.99848 * 8 6 5 35 35 H 1.08996 * 110.37522 * 332.46090 * 10 9 8 36 36 H 1.08995 * 110.37667 * 94.80572 * 10 9 8 37 37 H 1.08992 * 110.98982 * 278.97708 * 11 10 9 38 38 H 1.09005 * 110.98383 * 155.15899 * 11 10 9 39 39 H 1.08998 * 110.70484 * 205.96496 * 12 11 10 40 40 H 1.09004 * 110.85961 * 82.79438 * 12 11 10 41 41 H 0.97005 * 119.99363 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46254 * 65.82553 * 23 2 1 43 43 H 1.09002 * 109.46854 * 305.85423 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5181 -0.8714 -1.0209 7 1 3.7819 -1.3839 -0.0958 8 6 4.0680 -1.6558 -2.2140 9 7 3.5857 -3.0421 -2.1529 10 6 4.2002 -3.7674 -1.0206 11 6 4.3512 -5.2259 -1.5204 12 6 4.7248 -5.0094 -3.0105 13 6 3.8981 -3.7656 -3.3991 14 1 2.9751 -4.0726 -3.8909 15 6 4.6989 -2.8804 -4.3188 16 1 5.6908 -2.5622 -4.0337 17 6 4.1654 -2.4767 -5.5244 18 7 2.9574 -2.8639 -5.8714 19 14 5.1578 -1.3789 -6.6643 20 1 5.9627 -2.2208 -7.5854 21 1 4.2362 -0.5231 -7.4538 22 1 6.0637 -0.5201 -5.8597 23 6 1.9952 -0.7708 -1.1338 24 1 -0.3634 0.5740 -0.8523 25 1 -0.3634 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.5634 1.9257 0.8330 28 1 1.7324 1.8608 -0.9375 29 1 3.7814 0.8567 1.0905 30 1 3.9100 2.3512 0.1311 31 1 5.1998 0.4714 -0.8906 32 1 3.8896 1.0351 -1.9565 33 1 5.1575 -1.6485 -2.1826 34 1 3.7280 -1.1933 -3.1407 35 1 5.1765 -3.3444 -0.7840 36 1 3.5483 -3.7309 -0.1479 37 1 3.4109 -5.7694 -1.4286 38 1 5.1514 -5.7401 -0.9880 39 1 4.4307 -5.8705 -3.6106 40 1 5.7915 -4.8123 -3.1185 41 1 2.5819 -2.5795 -6.7195 42 1 1.7324 -0.2708 -2.0660 43 1 1.5634 -1.7716 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:27 Heat of formation + Delta-G solvation = -5.910591 kcal Electronic energy + Delta-G solvation = -20034.156206 eV Core-core repulsion = 17306.285600 eV Total energy + Delta-G solvation = -2727.870607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.98317 -37.59482 -33.71275 -32.62436 -31.80579 -29.23667 -28.20941 -26.47864 -24.53188 -24.25390 -22.45032 -21.22426 -20.13975 -19.12320 -18.90586 -16.34748 -15.43141 -15.05727 -14.89313 -14.51540 -14.24893 -14.15349 -13.97407 -13.10034 -12.69907 -12.57837 -12.33624 -12.11199 -11.95381 -11.77757 -11.62094 -11.25261 -11.01307 -10.94161 -10.71906 -10.57236 -10.43343 -10.23096 -10.03516 -9.85183 -9.70525 -9.61199 -9.20014 -9.13930 -8.56888 -8.02546 -6.99392 -6.03457 -4.10979 3.24605 3.32592 3.35182 4.24787 4.36965 4.98061 5.11763 5.18758 5.25502 5.46278 5.56108 5.62537 5.66664 5.70292 5.80863 5.83140 5.88525 5.99158 6.02472 6.05472 6.15047 6.25735 6.31124 6.35757 6.36986 6.49440 6.53666 6.61080 6.72618 6.81495 6.86857 6.95161 7.05252 7.07275 7.34741 7.40582 7.48226 7.74656 7.91153 8.02713 8.55673 8.64144 9.03446 9.50852 10.99325 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.007705 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.328868 B = 3633.177534 C = 4380.653636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.082 4.082 7 H 0.066 0.934 8 C 0.087 3.913 9 N -0.528 5.528 10 C 0.045 3.955 11 C -0.133 4.133 12 C -0.131 4.131 13 C 0.183 3.817 14 H 0.081 0.919 15 C -0.525 4.525 16 H 0.052 0.948 17 C 0.073 3.927 18 N -0.882 5.882 19 Si 0.884 3.116 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.073 3.927 24 H 0.021 0.979 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.084 0.916 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.262 0.738 42 H 0.029 0.971 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 5.032 10.202 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.101 4.101 7 H 0.085 0.915 8 C -0.042 4.042 9 N -0.252 5.252 10 C -0.084 4.084 11 C -0.171 4.171 12 C -0.171 4.171 13 C 0.078 3.922 14 H 0.099 0.901 15 C -0.564 4.564 16 H 0.070 0.930 17 C -0.131 4.131 18 N -0.520 5.520 19 Si 0.712 3.288 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.054 4.054 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.650 4.842 10.534 11.710 hybrid contribution 1.170 0.991 -1.609 2.222 sum -0.480 5.833 8.925 10.673 Atomic orbital electron populations 1.22300 0.88003 1.01874 0.99924 1.61986 1.07013 1.13158 1.45043 1.22050 0.95744 0.89729 0.99669 1.21553 0.94456 0.99579 0.99540 1.21616 0.99660 0.96296 0.97963 1.21299 0.94197 0.94697 0.99937 0.91544 1.21906 0.95957 0.89799 0.96538 1.63968 1.55662 1.01628 1.03975 1.22912 0.96391 0.93525 0.95565 1.22690 1.00062 0.96608 0.97759 1.22939 1.00372 1.00274 0.93473 1.20253 0.96429 0.89177 0.86373 0.90079 1.21292 1.01371 1.30921 1.02820 0.93015 1.24971 0.94656 0.95680 0.97770 1.69906 1.14932 1.44749 1.22393 0.86721 0.80157 0.80838 0.81111 1.20564 1.21133 1.19789 1.22050 0.95435 0.98251 0.89680 0.96063 0.91360 0.92096 0.91637 0.95319 0.91493 0.92187 0.92232 0.92312 0.95823 0.89762 0.95374 0.92466 0.91977 0.93027 0.93036 0.92978 0.92779 0.95288 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.62 60.07 0.58 0.94 16 2 N -0.55 -8.33 4.91 -242.96 -1.19 -9.53 16 3 C 0.06 0.76 5.46 -3.84 -0.02 0.74 16 4 C -0.11 -1.49 6.09 -26.65 -0.16 -1.66 16 5 C -0.12 -1.81 5.29 -26.61 -0.14 -1.95 16 6 C -0.08 -1.44 2.34 -90.54 -0.21 -1.65 16 7 H 0.07 1.19 7.33 -51.93 -0.38 0.81 16 8 C 0.09 1.84 3.09 -3.82 -0.01 1.83 16 9 N -0.53 -11.60 4.64 -224.71 -1.04 -12.64 16 10 C 0.04 0.85 5.71 -2.29 -0.01 0.84 16 11 C -0.13 -2.45 7.08 -24.59 -0.17 -2.63 16 12 C -0.13 -2.84 6.46 -24.91 -0.16 -3.00 16 13 C 0.18 4.52 3.70 -67.87 -0.25 4.27 16 14 H 0.08 2.29 6.97 -51.93 -0.36 1.93 16 15 C -0.52 -13.89 5.52 -34.44 -0.19 -14.08 16 16 H 0.05 1.39 7.29 -52.49 -0.38 1.00 16 17 C 0.07 1.98 5.37 -17.82 -0.10 1.88 16 18 N -0.88 -25.03 12.63 55.43 0.70 -24.33 16 19 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.07 1.28 4.62 -3.83 -0.02 1.27 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.52 7.17 -51.93 -0.37 0.15 16 34 H 0.08 2.05 6.89 -51.93 -0.36 1.69 16 35 H 0.03 0.54 7.63 -51.93 -0.40 0.14 16 36 H 0.06 1.03 8.12 -51.93 -0.42 0.60 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.68 7.68 -51.93 -0.40 1.28 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -27.18 324.34 -10.65 -37.83 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.10 Total: 1.14 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.87 Total: -13.21 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -1.54 Total: -46.50 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.18 -10.65 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.919 kcal (2) G-P(sol) polarization free energy of solvation -27.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds