Wall clock time and date at job start Mon Mar 30 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46844 * 111.00138 * 2 1 4 4 C 1.53037 * 109.52520 * 174.16065 * 3 2 1 5 5 C 1.53114 * 109.27606 * 59.18012 * 4 3 2 6 6 C 1.53118 * 109.16281 * 302.34693 * 5 4 3 7 7 H 1.08997 * 109.50693 * 297.67582 * 6 5 4 8 8 C 1.53003 * 109.50382 * 177.59486 * 6 5 4 9 9 N 1.46906 * 109.47099 * 174.99935 * 8 6 5 10 10 C 1.47844 * 110.99835 * 291.02366 * 9 8 6 11 11 C 1.54914 * 104.79079 * 213.63475 * 10 9 8 12 12 C 1.55136 * 101.65453 * 37.07307 * 11 10 9 13 13 C 1.47445 * 110.99772 * 170.17564 * 9 8 6 14 14 H 1.08997 * 109.88616 * 242.66394 * 13 9 8 15 15 C 1.50696 * 109.89044 * 3.69350 * 13 9 8 16 16 H 1.07997 * 120.00232 * 65.07029 * 15 13 9 17 17 C 1.37878 * 120.00001 * 245.06836 * 15 13 9 18 18 N 1.31519 * 119.99676 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00253 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46557 * 90.00199 * 19 17 15 21 21 H 1.48491 * 109.47317 * 210.00188 * 19 17 15 22 22 H 1.48502 * 109.47063 * 330.00687 * 19 17 15 23 23 C 1.46845 * 110.99563 * 235.79121 * 2 1 3 24 24 H 1.08995 * 109.47314 * 56.04146 * 1 2 3 25 25 H 1.08998 * 109.47313 * 176.04204 * 1 2 3 26 26 H 1.09002 * 109.47180 * 296.04233 * 1 2 3 27 27 H 1.09005 * 109.46110 * 54.14380 * 3 2 1 28 28 H 1.08995 * 109.46195 * 294.18378 * 3 2 1 29 29 H 1.08997 * 109.50476 * 299.24276 * 4 3 2 30 30 H 1.09000 * 109.50414 * 179.12455 * 4 3 2 31 31 H 1.09005 * 109.52598 * 182.43979 * 5 4 3 32 32 H 1.09001 * 109.57492 * 62.28112 * 5 4 3 33 33 H 1.09001 * 109.47275 * 55.00169 * 8 6 5 34 34 H 1.09005 * 109.47044 * 294.99848 * 8 6 5 35 35 H 1.08996 * 110.37522 * 332.46090 * 10 9 8 36 36 H 1.08995 * 110.37667 * 94.80572 * 10 9 8 37 37 H 1.08992 * 110.98982 * 278.97708 * 11 10 9 38 38 H 1.09005 * 110.98383 * 155.15899 * 11 10 9 39 39 H 1.08998 * 110.70484 * 205.96496 * 12 11 10 40 40 H 1.09004 * 110.85961 * 82.79438 * 12 11 10 41 41 H 0.97005 * 119.99363 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46254 * 65.82553 * 23 2 1 43 43 H 1.09002 * 109.46854 * 305.85423 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5181 -0.8714 -1.0209 7 1 3.7819 -1.3839 -0.0958 8 6 4.0680 -1.6558 -2.2140 9 7 3.5857 -3.0421 -2.1529 10 6 4.2002 -3.7674 -1.0206 11 6 4.3512 -5.2259 -1.5204 12 6 4.7248 -5.0094 -3.0105 13 6 3.8981 -3.7656 -3.3991 14 1 2.9751 -4.0726 -3.8909 15 6 4.6989 -2.8804 -4.3188 16 1 5.6908 -2.5622 -4.0337 17 6 4.1654 -2.4767 -5.5244 18 7 2.9574 -2.8639 -5.8714 19 14 5.1578 -1.3789 -6.6643 20 1 5.9627 -2.2208 -7.5854 21 1 4.2362 -0.5231 -7.4538 22 1 6.0637 -0.5201 -5.8597 23 6 1.9952 -0.7708 -1.1338 24 1 -0.3634 0.5740 -0.8523 25 1 -0.3634 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.5634 1.9257 0.8330 28 1 1.7324 1.8608 -0.9375 29 1 3.7814 0.8567 1.0905 30 1 3.9100 2.3512 0.1311 31 1 5.1998 0.4714 -0.8906 32 1 3.8896 1.0351 -1.9565 33 1 5.1575 -1.6485 -2.1826 34 1 3.7280 -1.1933 -3.1407 35 1 5.1765 -3.3444 -0.7840 36 1 3.5483 -3.7309 -0.1479 37 1 3.4109 -5.7694 -1.4286 38 1 5.1514 -5.7401 -0.9880 39 1 4.4307 -5.8705 -3.6106 40 1 5.7915 -4.8123 -3.1185 41 1 2.5819 -2.5795 -6.7195 42 1 1.7324 -0.2708 -2.0660 43 1 1.5634 -1.7716 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:26 Heat of formation + Delta-G solvation = -22.882450 kcal Electronic energy + Delta-G solvation = -20034.892161 eV Core-core repulsion = 17306.285600 eV Total energy + Delta-G solvation = -2728.606562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42869 -39.15264 -35.07631 -34.65292 -33.14089 -30.78744 -30.04694 -27.64900 -26.23717 -26.04588 -23.67813 -22.64421 -21.68356 -20.89605 -20.37425 -18.33906 -16.98096 -16.64711 -16.29775 -16.03914 -15.95383 -15.45806 -15.21809 -14.60687 -14.32010 -14.12049 -13.86602 -13.65097 -13.46043 -13.20596 -13.03553 -12.87128 -12.61030 -12.42370 -12.37042 -12.16015 -11.89018 -11.80901 -11.71246 -11.34038 -11.22874 -11.15192 -11.05851 -10.91964 -10.63888 -9.25804 -8.82151 -8.09766 -6.24229 1.34562 1.36473 1.45584 2.37351 3.04157 3.07270 3.61772 3.98451 3.99054 4.07620 4.09855 4.21450 4.28171 4.40750 4.46394 4.56818 4.62634 4.67818 4.74227 4.77105 4.87603 4.91520 4.94426 5.00871 5.04108 5.06522 5.10173 5.14216 5.15758 5.19397 5.31609 5.41764 5.42193 5.44892 5.59903 5.65714 5.85127 6.11891 6.15887 6.24561 6.69069 6.74413 7.02118 7.39450 8.91078 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.007705 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.328868 B = 3633.177534 C = 4380.653636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.053 3.947 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.071 4.071 7 H 0.072 0.928 8 C 0.100 3.900 9 N -0.538 5.538 10 C 0.046 3.954 11 C -0.120 4.120 12 C -0.130 4.130 13 C 0.178 3.822 14 H 0.038 0.962 15 C -0.526 4.526 16 H 0.045 0.955 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.943 3.057 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.268 1.268 23 C 0.084 3.916 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.021 0.979 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.012 0.988 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.262 0.738 42 H 0.003 0.997 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 5.905 12.366 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.075 4.075 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.090 4.090 7 H 0.090 0.910 8 C -0.029 4.029 9 N -0.262 5.262 10 C -0.082 4.082 11 C -0.158 4.158 12 C -0.169 4.169 13 C 0.072 3.928 14 H 0.056 0.944 15 C -0.565 4.565 16 H 0.063 0.937 17 C -0.176 4.176 18 N -0.557 5.557 19 Si 0.769 3.231 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.044 4.044 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.039 0.961 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.021 0.979 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.895 5.719 12.717 13.973 hybrid contribution 0.906 0.702 -2.240 2.516 sum 0.011 6.421 10.477 12.288 Atomic orbital electron populations 1.22380 0.86722 1.01961 1.01151 1.62015 1.08284 1.14128 1.43083 1.22185 0.96197 0.88747 1.00390 1.21534 0.93976 1.00551 0.98323 1.21616 1.00188 0.94999 0.98702 1.21161 0.94171 0.95648 0.98060 0.90952 1.21709 0.95079 0.89623 0.96485 1.63814 1.56495 1.02075 1.03853 1.22984 0.96791 0.93599 0.94835 1.22656 1.01525 0.96441 0.95185 1.22811 0.99402 0.98584 0.96101 1.20086 0.94731 0.90646 0.87322 0.94371 1.21457 1.01001 1.30790 1.03238 0.93693 1.25664 0.95544 0.97067 0.99342 1.70040 1.16484 1.46327 1.22868 0.85787 0.78833 0.79252 0.79277 1.19917 1.20990 1.19201 1.21792 0.95441 0.97418 0.89704 0.96318 0.91770 0.89467 0.88951 0.96101 0.90809 0.89680 0.91502 0.93658 0.97011 0.93808 0.94922 0.90591 0.91274 0.89799 0.93229 0.93352 0.92924 0.97910 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.62 127.69 1.23 1.87 16 2 N -0.55 -15.91 4.91 -922.58 -4.53 -20.44 16 3 C 0.05 1.29 5.46 86.33 0.47 1.76 16 4 C -0.11 -2.49 6.09 30.64 0.19 -2.30 16 5 C -0.12 -3.48 5.29 30.67 0.16 -3.32 16 6 C -0.07 -2.48 2.34 -10.74 -0.03 -2.51 16 7 H 0.07 2.47 7.33 -2.39 -0.02 2.45 16 8 C 0.10 4.34 3.09 86.30 0.27 4.61 16 9 N -0.54 -24.03 4.64 -864.85 -4.02 -28.05 16 10 C 0.05 1.68 5.71 86.78 0.50 2.18 16 11 C -0.12 -4.18 7.08 31.98 0.23 -3.95 16 12 C -0.13 -5.60 6.46 31.78 0.21 -5.39 16 13 C 0.18 9.09 3.70 44.51 0.16 9.26 16 14 H 0.04 2.27 6.97 -2.39 -0.02 2.25 16 15 C -0.53 -28.69 5.52 25.60 0.14 -28.55 16 16 H 0.04 2.46 7.29 -2.91 -0.02 2.44 16 17 C 0.02 1.34 5.37 84.65 0.45 1.80 16 18 N -0.92 -54.26 12.63 21.45 0.27 -53.99 16 19 Si 0.94 43.83 29.54 68.60 2.03 45.85 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 C 0.08 3.00 4.62 86.33 0.40 3.40 16 24 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.06 1.62 8.02 -2.39 -0.02 1.60 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.82 8.12 -2.38 -0.02 1.80 16 28 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.87 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.01 0.52 7.17 -2.39 -0.02 0.51 16 34 H 0.04 2.23 6.89 -2.38 -0.02 2.22 16 35 H 0.03 1.18 7.63 -2.39 -0.02 1.16 16 36 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 2.09 7.85 -2.39 -0.02 2.07 16 41 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 42 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.07 2.63 7.68 -2.39 -0.02 2.61 16 Total: -1.00 -60.55 324.34 -0.94 -61.49 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.93 Total: 16.29 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 4.38 Total: -21.15 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -8.28 Total: -102.47 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.55 -0.94 -61.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.608 kcal (2) G-P(sol) polarization free energy of solvation -60.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds