Wall clock time and date at job start Mon Mar 30 2020 04:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 110.99915 * 2 1 4 4 C 1.53033 * 109.52362 * 174.16045 * 3 2 1 5 5 C 1.53123 * 109.27878 * 59.18066 * 4 3 2 6 6 C 1.53118 * 109.16068 * 302.34488 * 5 4 3 7 7 H 1.08993 * 109.50186 * 297.67480 * 6 5 4 8 8 C 1.53002 * 109.50022 * 177.59001 * 6 5 4 9 9 N 1.46902 * 109.46707 * 174.72055 * 8 6 5 10 10 C 1.47897 * 111.00048 * 294.20268 * 9 8 6 11 11 C 1.53996 * 107.05869 * 214.15499 * 10 9 8 12 12 C 1.54601 * 105.13801 * 1.22999 * 11 10 9 13 13 C 1.48534 * 110.99548 * 176.81012 * 9 8 6 14 14 H 1.08993 * 110.67059 * 41.28693 * 13 9 8 15 15 C 1.50702 * 110.66472 * 278.15303 * 13 9 8 16 16 H 1.07993 * 120.00286 * 0.02562 * 15 13 9 17 17 C 1.37881 * 119.99807 * 180.02562 * 15 13 9 18 18 N 1.31515 * 120.00155 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99874 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46552 * 90.00074 * 19 17 15 21 21 H 1.48496 * 109.47047 * 210.00138 * 19 17 15 22 22 H 1.48497 * 109.46826 * 330.00248 * 19 17 15 23 23 C 1.46851 * 110.99866 * 235.79521 * 2 1 3 24 24 H 1.08999 * 109.46923 * 56.04542 * 1 2 3 25 25 H 1.09005 * 109.46863 * 176.03952 * 1 2 3 26 26 H 1.08994 * 109.47059 * 296.03977 * 1 2 3 27 27 H 1.09004 * 109.45656 * 54.14785 * 3 2 1 28 28 H 1.08994 * 109.46375 * 294.17814 * 3 2 1 29 29 H 1.09007 * 109.50638 * 299.23879 * 4 3 2 30 30 H 1.08997 * 109.53893 * 179.14607 * 4 3 2 31 31 H 1.09001 * 109.52097 * 182.43949 * 5 4 3 32 32 H 1.08997 * 109.57137 * 62.28361 * 5 4 3 33 33 H 1.08991 * 109.47761 * 294.72202 * 8 6 5 34 34 H 1.08997 * 109.46702 * 54.72602 * 8 6 5 35 35 H 1.09003 * 109.92086 * 333.51066 * 10 9 8 36 36 H 1.09006 * 109.91493 * 94.80519 * 10 9 8 37 37 H 1.09000 * 110.30516 * 120.14316 * 11 10 9 38 38 H 1.09002 * 110.31296 * 242.30885 * 11 10 9 39 39 H 1.08996 * 110.71940 * 140.31550 * 12 11 10 40 40 H 1.08999 * 110.71891 * 263.59811 * 12 11 10 41 41 H 0.96997 * 119.99821 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.46780 * 65.82253 * 23 2 1 43 43 H 1.09002 * 109.46179 * 305.84767 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5182 -0.8714 -1.0209 7 1 3.7820 -1.3838 -0.0958 8 6 4.0681 -1.6557 -2.2140 9 7 3.5913 -3.0436 -2.1493 10 6 4.1529 -3.7427 -0.9731 11 6 4.3701 -5.2115 -1.3817 12 6 3.9286 -5.2884 -2.8613 13 6 4.0430 -3.8174 -3.3340 14 1 5.0755 -3.5724 -3.5826 15 6 3.1366 -3.5650 -4.5112 16 1 2.2959 -2.8945 -4.4115 17 6 3.3807 -4.1902 -5.7156 18 7 4.4042 -5.0071 -5.8370 19 14 2.2568 -3.8779 -7.1747 20 1 2.7677 -2.7219 -7.9544 21 1 2.2237 -5.0836 -8.0409 22 1 0.8857 -3.5799 -6.6884 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0253 -0.0710 26 1 -0.3633 0.4511 0.9233 27 1 1.5634 1.9256 0.8331 28 1 1.7324 1.8608 -0.9375 29 1 3.7814 0.8568 1.0907 30 1 3.9104 2.3510 0.1316 31 1 5.1998 0.4715 -0.8905 32 1 3.8896 1.0351 -1.9564 33 1 3.7241 -1.1962 -3.1406 34 1 5.1576 -1.6441 -2.1853 35 1 5.1041 -3.2909 -0.6918 36 1 3.4523 -3.6888 -0.1397 37 1 5.4224 -5.4789 -1.2865 38 1 3.7547 -5.8698 -0.7685 39 1 4.6004 -5.9301 -3.4313 40 1 2.8996 -5.6396 -2.9390 41 1 4.5757 -5.4471 -6.6842 42 1 1.7325 -0.2708 -2.0661 43 1 1.5635 -1.7715 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:30 Heat of formation + Delta-G solvation = -7.225010 kcal Electronic energy + Delta-G solvation = -19768.070910 eV Core-core repulsion = 17040.143306 eV Total energy + Delta-G solvation = -2727.927604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.12255 -37.56896 -33.94326 -32.58246 -31.87811 -29.41011 -28.09904 -26.61017 -24.82680 -24.13113 -22.60484 -21.35026 -19.95653 -19.45861 -18.86750 -16.42095 -15.52845 -15.28267 -14.91719 -14.52505 -14.37574 -14.17310 -14.02576 -13.09627 -12.98469 -12.69400 -12.39743 -12.23877 -12.05618 -11.84336 -11.55761 -11.18160 -11.09325 -10.93071 -10.75476 -10.66960 -10.60843 -10.28716 -10.10215 -10.02112 -9.86122 -9.59495 -9.47240 -8.92194 -8.40104 -8.15080 -7.24528 -5.99991 -4.00408 3.31894 3.38647 3.42920 4.11192 4.43543 4.85997 5.00953 5.05548 5.29440 5.31611 5.33984 5.47756 5.55252 5.64589 5.67181 5.76587 5.79321 5.83135 5.93039 5.95156 6.02494 6.09325 6.14268 6.19159 6.25409 6.33698 6.39868 6.48560 6.61516 6.65516 6.70680 6.82903 7.10299 7.19941 7.27355 7.30764 7.47239 7.60345 7.86745 8.12770 8.28904 8.56109 9.05599 9.63368 11.10080 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.006280 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.614237 B = 4457.331287 C = 5034.473815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.077 4.077 7 H 0.073 0.927 8 C 0.062 3.938 9 N -0.513 5.513 10 C 0.040 3.960 11 C -0.138 4.138 12 C -0.100 4.100 13 C 0.205 3.795 14 H 0.011 0.989 15 C -0.494 4.494 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.071 3.929 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.259 0.741 42 H 0.029 0.971 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 9.135 10.870 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.096 4.096 7 H 0.091 0.909 8 C -0.068 4.068 9 N -0.237 5.237 10 C -0.089 4.089 11 C -0.176 4.176 12 C -0.139 4.139 13 C 0.099 3.901 14 H 0.028 0.972 15 C -0.533 4.533 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.056 4.056 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.680 8.814 11.185 14.491 hybrid contribution 0.115 0.493 -1.654 1.730 sum -2.565 9.307 9.531 13.566 Atomic orbital electron populations 1.22309 0.87756 1.02012 1.00043 1.61959 1.07205 1.13171 1.44806 1.22063 0.95690 0.89701 0.99806 1.21549 0.94477 0.99664 0.99459 1.21638 0.99742 0.96049 0.98195 1.21185 0.94508 0.94636 0.99310 0.90909 1.22119 0.96054 0.90914 0.97667 1.64779 1.55024 1.00592 1.03326 1.22739 0.96614 0.94374 0.95130 1.22499 0.99644 0.95772 0.99690 1.22406 1.00459 1.00023 0.91029 1.20293 0.94466 0.88395 0.86976 0.97176 1.20976 1.11880 1.26533 0.93915 0.92020 1.24944 0.95405 0.95285 0.98603 1.69959 1.28359 1.29661 1.25426 0.86567 0.81246 0.77526 0.82485 1.20879 1.21325 1.19870 1.22063 0.95097 0.98595 0.89863 0.96004 0.91247 0.91958 0.91467 0.95269 0.91368 0.92005 0.92100 0.92262 0.90667 0.95922 0.95589 0.92106 0.93196 0.92869 0.91371 0.92629 0.93082 0.95259 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.62 60.07 0.58 0.91 16 2 N -0.55 -7.63 4.91 -242.96 -1.19 -8.82 16 3 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 4 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 5 C -0.12 -1.58 5.29 -26.61 -0.14 -1.72 16 6 C -0.08 -1.22 2.31 -90.54 -0.21 -1.43 16 7 H 0.07 1.19 7.18 -51.93 -0.37 0.81 16 8 C 0.06 1.18 4.06 -3.82 -0.02 1.17 16 9 N -0.51 -10.94 4.47 -223.99 -1.00 -11.94 16 10 C 0.04 0.76 5.53 -2.76 -0.02 0.74 16 11 C -0.14 -2.68 6.93 -25.37 -0.18 -2.85 16 12 C -0.10 -2.37 5.94 -24.87 -0.15 -2.52 16 13 C 0.20 5.15 2.16 -66.94 -0.14 5.00 16 14 H 0.01 0.29 8.02 -51.93 -0.42 -0.12 16 15 C -0.49 -13.57 8.49 -34.44 -0.29 -13.86 16 16 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.06 1.63 5.36 -17.82 -0.10 1.54 16 18 N -0.90 -25.67 12.40 55.43 0.69 -24.98 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.07 1.14 4.63 -3.83 -0.02 1.12 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.55 7.90 -51.93 -0.41 1.14 16 34 H 0.02 0.44 7.93 -51.93 -0.41 0.02 16 35 H 0.03 0.47 7.64 -51.93 -0.40 0.07 16 36 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.73 7.64 -51.93 -0.40 1.33 16 40 H 0.05 1.37 8.05 -51.93 -0.42 0.95 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.62 7.69 -51.93 -0.40 1.22 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -28.04 328.33 -10.69 -38.74 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.25 Total: -1.64 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.86 Total: -12.74 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -1.51 Total: -45.74 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.04 -10.69 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.511 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds