Wall clock time and date at job start Mon Mar 30 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 110.99915 * 2 1 4 4 C 1.53033 * 109.52362 * 174.16045 * 3 2 1 5 5 C 1.53123 * 109.27878 * 59.18066 * 4 3 2 6 6 C 1.53118 * 109.16068 * 302.34488 * 5 4 3 7 7 H 1.08993 * 109.50186 * 297.67480 * 6 5 4 8 8 C 1.53002 * 109.50022 * 177.59001 * 6 5 4 9 9 N 1.46902 * 109.46707 * 174.72055 * 8 6 5 10 10 C 1.47897 * 111.00048 * 294.20268 * 9 8 6 11 11 C 1.53996 * 107.05869 * 214.15499 * 10 9 8 12 12 C 1.54601 * 105.13801 * 1.22999 * 11 10 9 13 13 C 1.48534 * 110.99548 * 176.81012 * 9 8 6 14 14 H 1.08993 * 110.67059 * 41.28693 * 13 9 8 15 15 C 1.50702 * 110.66472 * 278.15303 * 13 9 8 16 16 H 1.07993 * 120.00286 * 0.02562 * 15 13 9 17 17 C 1.37881 * 119.99807 * 180.02562 * 15 13 9 18 18 N 1.31515 * 120.00155 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99874 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46552 * 90.00074 * 19 17 15 21 21 H 1.48496 * 109.47047 * 210.00138 * 19 17 15 22 22 H 1.48497 * 109.46826 * 330.00248 * 19 17 15 23 23 C 1.46851 * 110.99866 * 235.79521 * 2 1 3 24 24 H 1.08999 * 109.46923 * 56.04542 * 1 2 3 25 25 H 1.09005 * 109.46863 * 176.03952 * 1 2 3 26 26 H 1.08994 * 109.47059 * 296.03977 * 1 2 3 27 27 H 1.09004 * 109.45656 * 54.14785 * 3 2 1 28 28 H 1.08994 * 109.46375 * 294.17814 * 3 2 1 29 29 H 1.09007 * 109.50638 * 299.23879 * 4 3 2 30 30 H 1.08997 * 109.53893 * 179.14607 * 4 3 2 31 31 H 1.09001 * 109.52097 * 182.43949 * 5 4 3 32 32 H 1.08997 * 109.57137 * 62.28361 * 5 4 3 33 33 H 1.08991 * 109.47761 * 294.72202 * 8 6 5 34 34 H 1.08997 * 109.46702 * 54.72602 * 8 6 5 35 35 H 1.09003 * 109.92086 * 333.51066 * 10 9 8 36 36 H 1.09006 * 109.91493 * 94.80519 * 10 9 8 37 37 H 1.09000 * 110.30516 * 120.14316 * 11 10 9 38 38 H 1.09002 * 110.31296 * 242.30885 * 11 10 9 39 39 H 1.08996 * 110.71940 * 140.31550 * 12 11 10 40 40 H 1.08999 * 110.71891 * 263.59811 * 12 11 10 41 41 H 0.96997 * 119.99821 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.46780 * 65.82253 * 23 2 1 43 43 H 1.09002 * 109.46179 * 305.84767 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5182 -0.8714 -1.0209 7 1 3.7820 -1.3838 -0.0958 8 6 4.0681 -1.6557 -2.2140 9 7 3.5913 -3.0436 -2.1493 10 6 4.1529 -3.7427 -0.9731 11 6 4.3701 -5.2115 -1.3817 12 6 3.9286 -5.2884 -2.8613 13 6 4.0430 -3.8174 -3.3340 14 1 5.0755 -3.5724 -3.5826 15 6 3.1366 -3.5650 -4.5112 16 1 2.2959 -2.8945 -4.4115 17 6 3.3807 -4.1902 -5.7156 18 7 4.4042 -5.0071 -5.8370 19 14 2.2568 -3.8779 -7.1747 20 1 2.7677 -2.7219 -7.9544 21 1 2.2237 -5.0836 -8.0409 22 1 0.8857 -3.5799 -6.6884 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0253 -0.0710 26 1 -0.3633 0.4511 0.9233 27 1 1.5634 1.9256 0.8331 28 1 1.7324 1.8608 -0.9375 29 1 3.7814 0.8568 1.0907 30 1 3.9104 2.3510 0.1316 31 1 5.1998 0.4715 -0.8905 32 1 3.8896 1.0351 -1.9564 33 1 3.7241 -1.1962 -3.1406 34 1 5.1576 -1.6441 -2.1853 35 1 5.1041 -3.2909 -0.6918 36 1 3.4523 -3.6888 -0.1397 37 1 5.4224 -5.4789 -1.2865 38 1 3.7547 -5.8698 -0.7685 39 1 4.6004 -5.9301 -3.4313 40 1 2.8996 -5.6396 -2.9390 41 1 4.5757 -5.4471 -6.6842 42 1 1.7325 -0.2708 -2.0661 43 1 1.5635 -1.7715 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:29 Heat of formation + Delta-G solvation = -24.633770 kcal Electronic energy + Delta-G solvation = -19768.825810 eV Core-core repulsion = 17040.143306 eV Total energy + Delta-G solvation = -2728.682504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43253 -39.11178 -35.30000 -34.51975 -33.17465 -30.89250 -29.98921 -27.66079 -26.49062 -25.89038 -23.70088 -22.68073 -21.61010 -21.07410 -20.24188 -18.48910 -16.92279 -16.64137 -16.53381 -16.07109 -15.78317 -15.41558 -15.33078 -14.66883 -14.33262 -14.10566 -13.96442 -13.63569 -13.38548 -13.14297 -13.03216 -12.94527 -12.62839 -12.53438 -12.38962 -12.16446 -12.01294 -11.85677 -11.73882 -11.40888 -11.34357 -11.18420 -11.01649 -10.92634 -10.51096 -9.24915 -9.00196 -8.13611 -6.21110 1.39359 1.40492 1.51317 2.41487 3.03879 3.16907 3.39838 3.92103 3.94068 4.01583 4.11127 4.16917 4.26465 4.36023 4.44929 4.54950 4.57737 4.61975 4.71384 4.74250 4.79062 4.86217 4.89740 4.94921 4.95562 5.02301 5.05233 5.07400 5.13227 5.20075 5.25658 5.38501 5.41155 5.51734 5.58750 5.65517 5.73449 6.14890 6.18219 6.24429 6.47280 6.61762 6.90910 7.46484 8.95680 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.006280 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.614237 B = 4457.331287 C = 5034.473815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.052 3.948 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.065 4.065 7 H 0.074 0.926 8 C 0.066 3.934 9 N -0.519 5.519 10 C 0.042 3.958 11 C -0.128 4.128 12 C -0.096 4.096 13 C 0.205 3.795 14 H -0.026 1.026 15 C -0.509 4.509 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.080 3.920 24 H 0.021 0.979 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.261 0.739 42 H 0.012 0.988 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 10.371 12.520 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.075 4.075 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.085 4.085 7 H 0.093 0.907 8 C -0.063 4.063 9 N -0.244 5.244 10 C -0.086 4.086 11 C -0.166 4.166 12 C -0.136 4.136 13 C 0.098 3.902 14 H -0.008 1.008 15 C -0.548 4.548 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.781 3.219 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.195 1.195 23 C -0.048 4.048 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.231 10.065 12.855 16.644 hybrid contribution 0.285 0.128 -2.152 2.174 sum -2.945 10.193 10.704 15.072 Atomic orbital electron populations 1.22372 0.86693 1.01942 1.01195 1.61984 1.08299 1.14235 1.43200 1.22187 0.96170 0.88657 1.00531 1.21536 0.93963 1.00655 0.98355 1.21631 1.00265 0.94532 0.99037 1.21059 0.94398 0.95694 0.97312 0.90719 1.22102 0.95827 0.90060 0.98308 1.64719 1.55425 1.01456 1.02760 1.22805 0.97636 0.93725 0.94445 1.22454 1.00839 0.96717 0.96616 1.22203 0.98972 0.98377 0.94000 1.20094 0.91981 0.90040 0.88107 1.00802 1.21211 1.11897 1.26344 0.95324 0.93071 1.25693 0.96763 0.95060 1.01160 1.70074 1.29710 1.30395 1.26067 0.85590 0.79433 0.77591 0.79238 1.20243 1.20724 1.19480 1.21840 0.95150 0.97653 0.90139 0.96034 0.91868 0.89689 0.89229 0.95687 0.91074 0.89575 0.91270 0.92865 0.93182 0.96288 0.94413 0.90132 0.91921 0.90405 0.93780 0.94180 0.93005 0.96998 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.62 127.69 1.23 1.81 16 2 N -0.55 -14.43 4.91 -922.58 -4.53 -18.96 16 3 C 0.05 1.13 5.46 86.32 0.47 1.60 16 4 C -0.11 -2.17 6.09 30.65 0.19 -1.99 16 5 C -0.12 -2.93 5.29 30.67 0.16 -2.77 16 6 C -0.07 -2.01 2.31 -10.74 -0.02 -2.04 16 7 H 0.07 2.30 7.18 -2.39 -0.02 2.28 16 8 C 0.07 2.57 4.06 86.30 0.35 2.92 16 9 N -0.52 -22.43 4.47 -862.58 -3.85 -26.29 16 10 C 0.04 1.53 5.53 86.45 0.48 2.01 16 11 C -0.13 -4.82 6.93 31.48 0.22 -4.60 16 12 C -0.10 -4.67 5.94 31.80 0.19 -4.48 16 13 C 0.20 10.64 2.16 44.52 0.10 10.74 16 14 H -0.03 -1.49 8.02 -2.39 -0.02 -1.51 16 15 C -0.51 -28.87 8.49 25.60 0.22 -28.65 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 17 C 0.01 0.67 5.36 84.66 0.45 1.13 16 18 N -0.92 -54.31 12.40 21.45 0.27 -54.05 16 19 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.08 2.54 4.63 86.33 0.40 2.94 16 24 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 1.48 8.02 -2.38 -0.02 1.46 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.57 8.12 -2.38 -0.02 1.55 16 28 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 2.16 7.90 -2.39 -0.02 2.14 16 34 H 0.02 0.74 7.93 -2.39 -0.02 0.72 16 35 H 0.04 1.30 7.64 -2.39 -0.02 1.28 16 36 H 0.08 2.66 8.09 -2.38 -0.02 2.64 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.04 2.30 7.64 -2.39 -0.02 2.28 16 40 H 0.04 2.01 8.05 -2.39 -0.02 1.99 16 41 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 2.42 7.69 -2.39 -0.02 2.40 16 Total: -1.00 -61.58 328.33 -0.74 -62.32 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.93 Total: 11.62 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 4.43 Total: -21.39 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -8.12 Total: -99.29 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -61.58 -0.74 -62.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.682 kcal (2) G-P(sol) polarization free energy of solvation -61.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds