Wall clock time and date at job start Mon Mar 30 2020 04:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48562 * 110.99698 * 2 1 4 4 C 1.54377 * 104.59392 * 200.96095 * 3 2 1 5 5 C 1.54265 * 105.06145 * 23.85303 * 4 3 2 6 6 H 1.08997 * 110.32358 * 241.00167 * 5 4 3 7 7 C 1.53002 * 110.32149 * 118.89429 * 5 4 3 8 8 C 1.52995 * 109.46968 * 176.42967 * 7 5 4 9 9 N 1.46908 * 109.47066 * 185.19409 * 8 7 5 10 10 C 1.47901 * 110.99738 * 184.29087 * 9 8 7 11 11 C 1.53996 * 107.05621 * 145.84331 * 10 9 8 12 12 C 1.54593 * 105.13960 * 358.77076 * 11 10 9 13 13 H 1.09000 * 110.72303 * 96.58158 * 12 11 10 14 14 C 1.50704 * 110.72368 * 219.68334 * 12 11 10 15 15 H 1.07996 * 119.99949 * 116.14375 * 14 12 11 16 16 C 1.37878 * 119.99951 * 296.15064 * 14 12 11 17 17 N 1.31515 * 119.99855 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99839 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46868 * 270.00018 * 18 16 14 20 20 H 1.48494 * 109.46923 * 29.99770 * 18 16 14 21 21 H 1.48494 * 109.47010 * 150.00077 * 18 16 14 22 22 C 1.48729 * 111.03935 * 301.86455 * 9 8 7 23 23 C 1.48719 * 111.01582 * 244.49519 * 2 1 3 24 24 H 1.08997 * 109.47232 * 60.12429 * 1 2 3 25 25 H 1.09000 * 109.46940 * 180.12911 * 1 2 3 26 26 H 1.09008 * 109.46935 * 300.12024 * 1 2 3 27 27 H 1.09002 * 110.41103 * 82.18733 * 3 2 1 28 28 H 1.08998 * 110.41656 * 319.74265 * 3 2 1 29 29 H 1.09005 * 110.32673 * 264.95628 * 4 3 2 30 30 H 1.09006 * 110.40927 * 142.79606 * 4 3 2 31 31 H 1.08998 * 109.47249 * 56.42665 * 7 5 4 32 32 H 1.09003 * 109.46933 * 296.43260 * 7 5 4 33 33 H 1.09004 * 109.47340 * 65.19283 * 8 7 5 34 34 H 1.09001 * 109.47176 * 305.19237 * 8 7 5 35 35 H 1.08997 * 109.92121 * 26.48330 * 10 9 8 36 36 H 1.09009 * 109.91193 * 265.19364 * 10 9 8 37 37 H 1.08997 * 110.30622 * 239.84969 * 11 10 9 38 38 H 1.09005 * 110.39096 * 117.73319 * 11 10 9 39 39 H 0.97003 * 119.99846 * 180.02562 * 17 16 14 40 40 H 1.08994 * 110.84019 * 81.96508 * 22 9 8 41 41 H 1.09003 * 110.58708 * 318.76619 * 22 9 8 42 42 H 1.09001 * 110.38780 * 40.23672 * 23 2 1 43 43 H 1.08995 * 110.50882 * 277.74958 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4432 -0.0538 -1.3586 6 1 4.1496 -0.7685 -0.9363 7 6 3.7946 0.2401 -2.8184 8 6 3.8765 -1.0738 -3.5978 9 7 4.3346 -0.8033 -4.9671 10 6 4.3282 -2.0377 -5.7818 11 6 3.9566 -1.6284 -7.2191 12 6 3.7245 -0.1012 -7.1568 13 1 4.6207 0.4379 -7.4637 14 6 2.5477 0.2946 -8.0109 15 1 1.6695 0.7262 -7.5537 16 6 2.5921 0.1057 -9.3759 17 7 3.6616 -0.4194 -9.9327 18 14 1.1330 0.5958 -10.4345 19 1 0.2011 -0.5540 -10.5557 20 1 0.4273 1.7408 -9.8053 21 1 1.6109 0.9900 -11.7841 22 6 3.4220 0.1467 -5.6576 23 6 2.0023 -0.5978 -1.2530 24 1 -0.3633 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3633 0.5157 0.8890 27 1 2.0079 1.7916 1.0121 28 1 1.4098 2.0213 -0.6601 29 1 4.1483 1.1749 0.2934 30 1 3.6953 2.0995 -1.1695 31 1 4.7565 0.7507 -2.8648 32 1 3.0248 0.8753 -3.2566 33 1 2.8914 -1.5394 -3.6295 34 1 4.5799 -1.7452 -3.1053 35 1 3.5882 -2.7363 -5.3915 36 1 5.3174 -2.4954 -5.7700 37 1 3.0454 -2.1371 -7.5336 38 1 4.7734 -1.8594 -7.9030 39 1 3.6930 -0.5519 -10.8931 40 1 3.6538 1.1758 -5.3834 41 1 2.3819 -0.0879 -5.4311 42 1 1.4104 -0.2752 -2.1095 43 1 2.0108 -1.6855 -1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:02 Heat of formation + Delta-G solvation = -24.434555 kcal Electronic energy + Delta-G solvation = -19071.230126 eV Core-core repulsion = 16342.556260 eV Total energy + Delta-G solvation = -2728.673866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34621 -39.43084 -35.73547 -34.47852 -32.44030 -30.63665 -29.86489 -28.17383 -26.84133 -25.87672 -23.40594 -22.18225 -21.55091 -21.36186 -20.60014 -18.41870 -17.12018 -16.91618 -16.58584 -16.20614 -15.83489 -15.73632 -15.02581 -14.85868 -14.33375 -14.14975 -13.87750 -13.71966 -13.34610 -13.07226 -13.00808 -12.87285 -12.61471 -12.48695 -12.41703 -12.35820 -12.21142 -11.85916 -11.67337 -11.55059 -11.42132 -11.26736 -11.10232 -10.83193 -10.51804 -9.51949 -9.25579 -8.15159 -6.25875 1.39733 1.40400 1.50839 2.41022 3.04488 3.15659 3.23344 3.67222 3.73123 3.93786 4.14625 4.17541 4.23344 4.35536 4.41839 4.47699 4.52274 4.58790 4.59570 4.65070 4.66700 4.69639 4.78002 4.85239 4.90832 4.96311 5.02699 5.04038 5.14477 5.17018 5.25609 5.28070 5.33954 5.43076 5.58699 5.78623 5.83788 5.86126 6.01933 6.02646 6.30866 6.39458 6.84317 7.42127 8.94557 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.004461 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.744456 B = 6275.013599 C = 6844.215416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.528 5.528 3 C 0.029 3.971 4 C -0.118 4.118 5 C -0.083 4.083 6 H 0.088 0.912 7 C -0.099 4.099 8 C 0.050 3.950 9 N -0.529 5.529 10 C 0.044 3.956 11 C -0.095 4.095 12 C 0.040 3.960 13 H 0.002 0.998 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.282 1.282 22 C 0.060 3.940 23 C 0.035 3.965 24 H 0.023 0.977 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.033 0.967 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 0.385 19.141 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.252 5.252 3 C -0.099 4.099 4 C -0.156 4.156 5 C -0.103 4.103 6 H 0.106 0.894 7 C -0.137 4.137 8 C -0.078 4.078 9 N -0.253 5.253 10 C -0.084 4.084 11 C -0.134 4.134 12 C 0.021 3.979 13 H 0.020 0.980 14 C -0.573 4.573 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.192 1.192 21 H -0.208 1.208 22 C -0.067 4.067 23 C -0.093 4.093 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.014 0.237 19.515 19.620 hybrid contribution -1.805 0.224 -1.920 2.645 sum -3.819 0.461 17.595 18.011 Atomic orbital electron populations 1.22548 0.87475 1.02599 1.01093 1.65417 1.08891 1.15954 1.34956 1.23184 0.95458 0.89643 1.01568 1.22377 0.96474 0.97102 0.99679 1.21835 0.96163 0.97945 0.94322 0.89405 1.21609 1.01838 0.96472 0.93790 1.22348 0.98334 0.98160 0.88960 1.64786 1.48187 1.10060 1.02238 1.22839 1.00559 0.91735 0.93274 1.22119 0.98627 0.98608 0.94073 1.19515 0.95009 0.92432 0.90961 0.97955 1.21432 1.01751 1.41578 0.92581 0.92860 1.25761 0.98450 0.95000 0.99273 1.70103 1.29494 1.44906 1.11195 0.85604 0.79591 0.78738 0.78038 1.20096 1.19167 1.20800 1.23083 0.93086 0.95984 0.94597 1.23255 0.95263 1.00261 0.90506 0.95844 0.90918 0.90129 0.89021 0.94302 0.89868 0.90880 0.90952 0.93262 0.95554 0.89796 0.93902 0.90422 0.94866 0.94403 0.92984 0.91472 0.95421 0.94896 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.53 127.69 1.22 1.42 16 2 N -0.53 -10.86 5.66 -907.19 -5.13 -15.99 16 3 C 0.03 0.54 6.50 86.45 0.56 1.10 16 4 C -0.12 -2.13 6.65 31.49 0.21 -1.92 16 5 C -0.08 -1.71 3.07 -9.90 -0.03 -1.74 16 6 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 7 C -0.10 -2.49 4.07 30.59 0.12 -2.37 16 8 C 0.05 1.44 4.63 86.30 0.40 1.84 16 9 N -0.53 -19.66 5.35 -882.45 -4.72 -24.38 16 10 C 0.04 1.68 6.70 86.45 0.58 2.26 16 11 C -0.10 -4.63 5.65 31.47 0.18 -4.45 16 12 C 0.04 2.08 2.93 -10.33 -0.03 2.05 16 13 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 14 C -0.54 -30.00 8.40 25.60 0.22 -29.78 16 15 H 0.05 2.92 7.78 -2.91 -0.02 2.90 16 16 C 0.01 0.81 5.34 84.65 0.45 1.26 16 17 N -0.92 -54.14 12.61 21.45 0.27 -53.87 16 18 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C 0.06 2.55 4.79 86.61 0.41 2.97 16 23 C 0.04 0.76 5.34 86.42 0.46 1.23 16 24 H 0.02 0.44 7.98 -2.39 -0.02 0.42 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 0.74 7.97 -2.39 -0.02 0.72 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.07 1.31 7.71 -2.38 -0.02 1.30 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.38 7.07 -2.39 -0.02 1.36 16 33 H 0.03 0.78 7.52 -2.39 -0.02 0.76 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.51 7.67 -2.39 -0.02 1.50 16 36 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 37 H 0.03 1.69 7.84 -2.39 -0.02 1.67 16 38 H 0.04 1.95 8.11 -2.38 -0.02 1.93 16 39 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.07 2.76 7.79 -2.39 -0.02 2.74 16 41 H 0.03 1.19 7.92 -2.39 -0.02 1.17 16 42 H 0.03 0.81 7.54 -2.39 -0.02 0.79 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -61.06 330.68 -1.87 -62.94 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.93 Total: 11.54 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.75 Total: -26.14 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -9.58 Total: -94.25 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -61.06 -1.87 -62.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.502 kcal (2) G-P(sol) polarization free energy of solvation -61.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds