Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48562 * 111.00142 * 2 1 4 4 C 1.54377 * 104.59407 * 159.03785 * 3 2 1 5 5 C 1.54266 * 105.06190 * 336.14868 * 4 3 2 6 6 H 1.08996 * 110.32023 * 118.89709 * 5 4 3 7 7 C 1.52993 * 110.32247 * 241.00140 * 5 4 3 8 8 C 1.53009 * 109.47064 * 184.99832 * 7 5 4 9 9 N 1.46892 * 109.47047 * 179.97438 * 8 7 5 10 10 C 1.47847 * 111.00345 * 290.84093 * 9 8 7 11 11 C 1.54902 * 104.79796 * 213.63751 * 10 9 8 12 12 C 1.55138 * 101.65381 * 37.07167 * 11 10 9 13 13 H 1.08997 * 110.70621 * 82.72773 * 12 11 10 14 14 C 1.50701 * 110.70856 * 205.96061 * 12 11 10 15 15 H 1.08001 * 119.99879 * 113.59615 * 14 12 11 16 16 C 1.37876 * 120.00037 * 293.60216 * 14 12 11 17 17 N 1.31515 * 120.00302 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99775 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47083 * 90.00147 * 18 16 14 20 20 H 1.48507 * 109.47167 * 209.99638 * 18 16 14 21 21 H 1.48494 * 109.47364 * 329.99998 * 18 16 14 22 22 C 1.47448 * 110.99923 * 170.00087 * 9 8 7 23 23 C 1.48562 * 110.99842 * 115.42164 * 2 1 3 24 24 H 1.08999 * 109.47496 * 304.58457 * 1 2 3 25 25 H 1.09003 * 109.46816 * 64.57930 * 1 2 3 26 26 H 1.08996 * 109.47270 * 184.57693 * 1 2 3 27 27 H 1.09000 * 110.41111 * 40.26361 * 3 2 1 28 28 H 1.08989 * 110.41482 * 277.81625 * 3 2 1 29 29 H 1.09005 * 110.32720 * 217.25400 * 4 3 2 30 30 H 1.09003 * 110.32570 * 95.04509 * 4 3 2 31 31 H 1.08998 * 109.47673 * 304.99855 * 7 5 4 32 32 H 1.08998 * 109.47267 * 65.00127 * 7 5 4 33 33 H 1.08998 * 109.46895 * 300.00500 * 8 7 5 34 34 H 1.09003 * 109.46770 * 60.00504 * 8 7 5 35 35 H 1.08993 * 110.37454 * 332.47361 * 10 9 8 36 36 H 1.09005 * 110.37107 * 94.80777 * 10 9 8 37 37 H 1.09006 * 110.99685 * 278.97761 * 11 10 9 38 38 H 1.09005 * 111.02439 * 155.18124 * 11 10 9 39 39 H 0.96993 * 120.00300 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.88882 * 242.66489 * 22 9 8 41 41 H 1.08997 * 109.88455 * 3.85300 * 22 9 8 42 42 H 1.08998 * 110.41528 * 82.17831 * 23 2 1 43 43 H 1.08997 * 110.50874 * 319.78619 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 0.5345 5 6 3.4432 -0.0540 1.3586 6 1 4.1482 -0.7693 0.9352 7 6 3.7971 0.2396 2.8178 8 6 3.9137 -1.0768 3.5890 9 7 4.2541 -0.7950 4.9899 10 6 5.6323 -0.2723 5.1055 11 6 6.1506 -0.8192 6.4589 12 6 5.5126 -2.2330 6.4905 13 1 6.1138 -2.9400 5.9189 14 6 5.3369 -2.7067 7.9103 15 1 4.3450 -2.8439 8.3150 16 6 6.4424 -2.9649 8.6928 17 7 7.6503 -2.7983 8.1999 18 14 6.2245 -3.5514 10.4529 19 1 6.1696 -5.0351 10.4770 20 1 7.3697 -3.0850 11.2754 21 1 4.9612 -3.0002 11.0055 22 6 4.1426 -2.0113 5.8158 23 6 2.0013 -0.5954 1.2527 24 1 -0.3634 0.5833 0.8460 25 1 -0.3633 0.4412 -0.9282 26 1 -0.3633 -1.0243 0.0820 27 1 1.4099 2.0212 0.6602 28 1 2.0079 1.7916 -1.0119 29 1 3.6937 2.0995 1.1700 30 1 4.1483 1.1748 -0.2934 31 1 4.7474 0.7715 2.8613 32 1 3.0158 0.8544 3.2645 33 1 2.9634 -1.6088 3.5455 34 1 4.6951 -1.6916 3.1423 35 1 6.2483 -0.6418 4.2858 36 1 5.6252 0.8177 5.1144 37 1 5.7924 -0.2105 7.2892 38 1 7.2389 -0.8817 6.4645 39 1 8.4280 -2.9802 8.7502 40 1 3.3729 -1.8745 6.5754 41 1 3.8970 -2.8661 5.1856 42 1 2.0078 -1.6832 1.1838 43 1 1.4103 -0.2730 2.1099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -6.193729 kcal Electronic energy + Delta-G solvation = -18872.434335 eV Core-core repulsion = 16144.551451 eV Total energy + Delta-G solvation = -2727.882884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.35214 -37.97712 -34.34876 -32.78889 -31.03900 -29.30157 -28.22664 -27.26701 -25.45766 -24.03880 -22.31274 -21.23419 -20.09340 -19.73876 -19.42023 -16.49680 -16.21180 -15.56492 -14.99923 -14.97548 -14.43268 -14.17104 -14.12009 -13.51995 -12.99537 -12.71688 -12.46083 -12.29175 -12.09948 -11.84610 -11.64812 -11.59705 -11.25386 -11.10018 -11.01209 -10.86153 -10.67620 -10.53945 -10.42389 -10.28697 -10.07556 -9.61528 -9.24587 -8.85236 -8.69678 -8.38337 -7.56170 -6.01699 -4.04123 3.31045 3.37765 3.41455 3.87245 4.42985 4.47893 4.53993 4.64938 4.95452 5.11891 5.15025 5.23776 5.30783 5.34915 5.42908 5.47949 5.57942 5.61889 5.66764 5.76671 5.85542 5.87248 5.92767 6.00495 6.10288 6.12611 6.23925 6.35018 6.40741 6.46394 6.60760 6.67181 6.81686 6.89565 7.17345 7.21419 7.61202 7.63507 7.86548 7.92040 8.01280 8.43009 8.97748 9.59759 11.08466 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051961 B = 0.003632 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.732523 B = 7706.575600 C = 8047.100656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.031 3.969 4 C -0.120 4.120 5 C -0.091 4.091 6 H 0.078 0.922 7 C -0.104 4.104 8 C 0.053 3.947 9 N -0.535 5.535 10 C 0.038 3.962 11 C -0.105 4.105 12 C 0.034 3.966 13 H 0.030 0.970 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.047 3.953 23 C 0.036 3.964 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.080 0.920 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 7.268 -14.904 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.243 5.243 3 C -0.097 4.097 4 C -0.159 4.159 5 C -0.111 4.111 6 H 0.097 0.903 7 C -0.143 4.143 8 C -0.076 4.076 9 N -0.259 5.259 10 C -0.089 4.089 11 C -0.144 4.144 12 C 0.015 3.985 13 H 0.048 0.952 14 C -0.548 4.548 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.080 4.080 23 C -0.092 4.092 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.455 7.318 -15.159 19.307 hybrid contribution 0.209 -0.523 1.355 1.468 sum -9.246 6.794 -13.804 17.950 Atomic orbital electron populations 1.22497 0.88238 1.02009 1.00838 1.65372 1.08023 1.15387 1.35547 1.23125 0.95600 0.90119 1.00818 1.22378 0.96170 0.97811 0.99495 1.21906 0.96372 0.97009 0.95782 0.90337 1.21662 1.01981 0.98037 0.92573 1.22260 0.99910 0.95931 0.89517 1.63597 1.25247 1.29954 1.07109 1.23127 0.88087 0.98613 0.99115 1.22636 1.00451 0.98280 0.93048 1.19809 0.89870 0.93057 0.95770 0.95231 1.21086 0.92560 1.44615 0.96586 0.92476 1.24986 0.95301 0.95362 0.98329 1.69959 0.97484 1.48965 1.36526 0.86605 0.77719 0.78911 0.84833 1.20747 1.21280 1.19853 1.22985 1.01182 0.88491 0.95303 1.23247 0.95111 1.00195 0.90652 0.95329 0.91461 0.91303 0.93885 0.90419 0.91018 0.91133 0.91757 0.91501 0.91725 0.95302 0.95027 0.92266 0.92548 0.91346 0.93072 0.91393 0.94982 0.90201 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.06 0.57 0.69 16 2 N -0.52 -5.55 5.66 -238.24 -1.35 -6.90 16 3 C 0.03 0.30 6.49 -2.18 -0.01 0.28 16 4 C -0.12 -1.18 6.65 -25.35 -0.17 -1.35 16 5 C -0.09 -1.02 3.06 -89.24 -0.27 -1.29 16 6 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 7 C -0.10 -1.35 4.44 -26.73 -0.12 -1.47 16 8 C 0.05 0.82 4.44 -3.82 -0.02 0.80 16 9 N -0.53 -10.24 5.16 -231.25 -1.19 -11.44 16 10 C 0.04 0.75 5.78 -2.30 -0.01 0.73 16 11 C -0.11 -2.49 5.94 -24.60 -0.15 -2.64 16 12 C 0.03 0.86 2.78 -89.95 -0.25 0.61 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.51 -14.10 8.47 -34.44 -0.29 -14.39 16 15 H 0.06 1.56 7.53 -52.49 -0.40 1.16 16 16 C 0.06 1.72 5.36 -17.82 -0.10 1.63 16 17 N -0.89 -25.71 12.49 55.43 0.69 -25.02 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 22 C 0.05 1.02 6.45 -2.83 -0.02 1.01 16 23 C 0.04 0.40 5.31 -2.18 -0.01 0.38 16 24 H 0.03 0.25 7.97 -51.93 -0.41 -0.17 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.40 7.90 -51.93 -0.41 -0.01 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.67 7.71 -51.93 -0.40 0.27 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.85 7.49 -51.93 -0.39 0.46 16 32 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 33 H 0.06 0.97 7.48 -51.93 -0.39 0.58 16 34 H 0.03 0.47 7.85 -51.93 -0.41 0.06 16 35 H 0.03 0.60 7.62 -51.93 -0.40 0.20 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 38 H 0.07 1.72 7.76 -51.93 -0.40 1.32 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.07 1.51 7.63 -51.93 -0.40 1.12 16 41 H 0.03 0.65 7.55 -51.93 -0.39 0.26 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.57 7.59 -51.93 -0.39 0.17 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -28.54 330.40 -10.87 -39.41 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.13 Total: -2.40 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.85 Total: -14.99 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -1.85 Total: -43.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.54 -10.87 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.216 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds