Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48562 * 111.00142 * 2 1 4 4 C 1.54377 * 104.59407 * 159.03785 * 3 2 1 5 5 C 1.54266 * 105.06190 * 336.14868 * 4 3 2 6 6 H 1.08996 * 110.32023 * 118.89709 * 5 4 3 7 7 C 1.52993 * 110.32247 * 241.00140 * 5 4 3 8 8 C 1.53009 * 109.47064 * 184.99832 * 7 5 4 9 9 N 1.46892 * 109.47047 * 179.97438 * 8 7 5 10 10 C 1.47847 * 111.00345 * 290.84093 * 9 8 7 11 11 C 1.54902 * 104.79796 * 213.63751 * 10 9 8 12 12 C 1.55138 * 101.65381 * 37.07167 * 11 10 9 13 13 H 1.08997 * 110.70621 * 82.72773 * 12 11 10 14 14 C 1.50701 * 110.70856 * 205.96061 * 12 11 10 15 15 H 1.08001 * 119.99879 * 113.59615 * 14 12 11 16 16 C 1.37876 * 120.00037 * 293.60216 * 14 12 11 17 17 N 1.31515 * 120.00302 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99775 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47083 * 90.00147 * 18 16 14 20 20 H 1.48507 * 109.47167 * 209.99638 * 18 16 14 21 21 H 1.48494 * 109.47364 * 329.99998 * 18 16 14 22 22 C 1.47448 * 110.99923 * 170.00087 * 9 8 7 23 23 C 1.48562 * 110.99842 * 115.42164 * 2 1 3 24 24 H 1.08999 * 109.47496 * 304.58457 * 1 2 3 25 25 H 1.09003 * 109.46816 * 64.57930 * 1 2 3 26 26 H 1.08996 * 109.47270 * 184.57693 * 1 2 3 27 27 H 1.09000 * 110.41111 * 40.26361 * 3 2 1 28 28 H 1.08989 * 110.41482 * 277.81625 * 3 2 1 29 29 H 1.09005 * 110.32720 * 217.25400 * 4 3 2 30 30 H 1.09003 * 110.32570 * 95.04509 * 4 3 2 31 31 H 1.08998 * 109.47673 * 304.99855 * 7 5 4 32 32 H 1.08998 * 109.47267 * 65.00127 * 7 5 4 33 33 H 1.08998 * 109.46895 * 300.00500 * 8 7 5 34 34 H 1.09003 * 109.46770 * 60.00504 * 8 7 5 35 35 H 1.08993 * 110.37454 * 332.47361 * 10 9 8 36 36 H 1.09005 * 110.37107 * 94.80777 * 10 9 8 37 37 H 1.09006 * 110.99685 * 278.97761 * 11 10 9 38 38 H 1.09005 * 111.02439 * 155.18124 * 11 10 9 39 39 H 0.96993 * 120.00300 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.88882 * 242.66489 * 22 9 8 41 41 H 1.08997 * 109.88455 * 3.85300 * 22 9 8 42 42 H 1.08998 * 110.41528 * 82.17831 * 23 2 1 43 43 H 1.08997 * 110.50874 * 319.78619 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 0.5345 5 6 3.4432 -0.0540 1.3586 6 1 4.1482 -0.7693 0.9352 7 6 3.7971 0.2396 2.8178 8 6 3.9137 -1.0768 3.5890 9 7 4.2541 -0.7950 4.9899 10 6 5.6323 -0.2723 5.1055 11 6 6.1506 -0.8192 6.4589 12 6 5.5126 -2.2330 6.4905 13 1 6.1138 -2.9400 5.9189 14 6 5.3369 -2.7067 7.9103 15 1 4.3450 -2.8439 8.3150 16 6 6.4424 -2.9649 8.6928 17 7 7.6503 -2.7983 8.1999 18 14 6.2245 -3.5514 10.4529 19 1 6.1696 -5.0351 10.4770 20 1 7.3697 -3.0850 11.2754 21 1 4.9612 -3.0002 11.0055 22 6 4.1426 -2.0113 5.8158 23 6 2.0013 -0.5954 1.2527 24 1 -0.3634 0.5833 0.8460 25 1 -0.3633 0.4412 -0.9282 26 1 -0.3633 -1.0243 0.0820 27 1 1.4099 2.0212 0.6602 28 1 2.0079 1.7916 -1.0119 29 1 3.6937 2.0995 1.1700 30 1 4.1483 1.1748 -0.2934 31 1 4.7474 0.7715 2.8613 32 1 3.0158 0.8544 3.2645 33 1 2.9634 -1.6088 3.5455 34 1 4.6951 -1.6916 3.1423 35 1 6.2483 -0.6418 4.2858 36 1 5.6252 0.8177 5.1144 37 1 5.7924 -0.2105 7.2892 38 1 7.2389 -0.8817 6.4645 39 1 8.4280 -2.9802 8.7502 40 1 3.3729 -1.8745 6.5754 41 1 3.8970 -2.8661 5.1856 42 1 2.0078 -1.6832 1.1838 43 1 1.4103 -0.2730 2.1099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -24.467676 kcal Electronic energy + Delta-G solvation = -18873.226753 eV Core-core repulsion = 16144.551451 eV Total energy + Delta-G solvation = -2728.675302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32921 -39.47786 -35.72087 -34.44284 -32.40414 -30.48611 -30.01297 -28.36519 -26.64463 -25.73218 -23.54342 -22.07394 -21.61307 -21.21110 -20.80945 -18.58197 -17.14131 -16.69106 -16.44837 -16.29702 -15.97929 -15.64702 -15.02865 -14.58757 -14.40342 -14.07700 -13.87479 -13.73923 -13.43670 -12.98549 -12.96762 -12.70804 -12.64325 -12.54172 -12.41105 -12.39094 -12.13512 -12.01748 -11.62641 -11.55717 -11.40629 -11.33240 -11.06130 -10.91459 -10.50076 -9.47278 -9.14880 -8.15121 -6.24811 1.41052 1.41753 1.52476 2.42354 3.06073 3.16220 3.21563 3.66569 3.76458 4.02770 4.13250 4.16446 4.26658 4.34942 4.44452 4.50996 4.54479 4.55864 4.60617 4.61902 4.69169 4.74505 4.81948 4.90485 4.95558 4.98738 4.99640 5.04086 5.15381 5.17251 5.25784 5.31207 5.35320 5.46005 5.57020 5.71310 5.86546 5.87816 6.06896 6.16460 6.31451 6.37273 6.83913 7.42658 8.94567 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.051961 B = 0.003632 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.732523 B = 7706.575600 C = 8047.100656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.533 5.533 3 C 0.031 3.969 4 C -0.118 4.118 5 C -0.087 4.087 6 H 0.075 0.925 7 C -0.092 4.092 8 C 0.052 3.948 9 N -0.536 5.536 10 C 0.052 3.948 11 C -0.100 4.100 12 C 0.025 3.975 13 H -0.002 1.002 14 C -0.530 4.530 15 H 0.055 0.945 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.058 3.942 23 C 0.037 3.963 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 8.029 -15.605 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.257 5.257 3 C -0.096 4.096 4 C -0.156 4.156 5 C -0.107 4.107 6 H 0.093 0.907 7 C -0.130 4.130 8 C -0.076 4.076 9 N -0.260 5.260 10 C -0.076 4.076 11 C -0.139 4.139 12 C 0.006 3.994 13 H 0.016 0.984 14 C -0.569 4.569 15 H 0.074 0.926 16 C -0.187 4.187 17 N -0.560 5.560 18 Si 0.782 3.218 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.069 4.069 23 C -0.091 4.091 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.522 8.084 -15.877 20.691 hybrid contribution 0.530 -0.778 1.531 1.797 sum -9.992 7.306 -14.346 18.948 Atomic orbital electron populations 1.22540 0.87276 1.02325 1.01492 1.65379 1.09091 1.16102 1.35098 1.23169 0.95283 0.89630 1.01545 1.22374 0.96621 0.97063 0.99543 1.21837 0.96332 0.97848 0.94683 0.90698 1.21543 1.01975 0.96244 0.93239 1.22366 0.99988 0.97666 0.87557 1.63620 1.24726 1.28581 1.09039 1.23012 0.88179 0.99769 0.96636 1.22432 0.98897 0.97459 0.95063 1.19788 0.91737 0.93101 0.94799 0.98384 1.21441 0.92624 1.44870 0.97924 0.92638 1.25786 0.94986 0.95487 1.02448 1.70081 0.98146 1.49744 1.37993 0.85569 0.77834 0.78539 0.79813 1.20087 1.20899 1.19140 1.22755 0.98606 0.90006 0.95545 1.23199 0.94994 1.00055 0.90885 0.95256 0.90296 0.91125 0.93659 0.89325 0.90438 0.90494 0.91763 0.91556 0.90931 0.95775 0.94368 0.89982 0.94040 0.93652 0.93021 0.92095 0.94075 0.90572 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.53 127.69 1.22 1.41 16 2 N -0.53 -10.33 5.66 -907.66 -5.14 -15.47 16 3 C 0.03 0.53 6.49 86.45 0.56 1.09 16 4 C -0.12 -2.03 6.65 31.49 0.21 -1.82 16 5 C -0.09 -1.78 3.06 -9.90 -0.03 -1.81 16 6 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 7 C -0.09 -2.18 4.44 30.60 0.14 -2.05 16 8 C 0.05 1.55 4.44 86.31 0.38 1.94 16 9 N -0.54 -19.86 5.16 -885.54 -4.57 -24.43 16 10 C 0.05 1.96 5.78 86.77 0.50 2.46 16 11 C -0.10 -4.79 5.94 31.98 0.19 -4.60 16 12 C 0.03 1.29 2.78 -10.36 -0.03 1.26 16 13 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 14 C -0.53 -29.77 8.47 25.60 0.22 -29.55 16 15 H 0.06 3.05 7.53 -2.91 -0.02 3.03 16 16 C 0.01 0.66 5.36 84.65 0.45 1.11 16 17 N -0.92 -54.13 12.49 21.45 0.27 -53.86 16 18 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.06 2.52 6.45 86.65 0.56 3.07 16 23 C 0.04 0.75 5.31 86.45 0.46 1.21 16 24 H 0.03 0.46 7.97 -2.39 -0.02 0.44 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.74 7.90 -2.39 -0.02 0.72 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.25 7.71 -2.38 -0.02 1.23 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.54 7.49 -2.39 -0.02 1.53 16 32 H 0.07 1.61 7.98 -2.39 -0.02 1.59 16 33 H 0.07 2.05 7.48 -2.39 -0.02 2.03 16 34 H 0.02 0.75 7.85 -2.39 -0.02 0.73 16 35 H 0.04 1.41 7.62 -2.39 -0.02 1.39 16 36 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 37 H 0.04 2.07 8.04 -2.38 -0.02 2.05 16 38 H 0.04 2.34 7.76 -2.38 -0.02 2.32 16 39 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.06 2.70 7.63 -2.39 -0.02 2.68 16 41 H 0.04 1.66 7.55 -2.39 -0.02 1.64 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 0.95 7.59 -2.39 -0.02 0.93 16 Total: -1.00 -60.74 330.40 -1.65 -62.39 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.93 Total: 11.56 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.83 Total: -26.27 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -9.44 Total: -93.76 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -60.74 -1.65 -62.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.925 kcal (2) G-P(sol) polarization free energy of solvation -60.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds