Wall clock time and date at job start Mon Mar 30 2020 04:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47849 * 110.99493 * 2 1 4 4 C 1.55123 * 104.90175 * 146.24203 * 3 2 1 5 5 C 1.55142 * 101.55848 * 323.15662 * 4 3 2 6 6 H 1.08998 * 110.70404 * 276.96785 * 5 4 3 7 7 C 1.52999 * 110.70515 * 153.90773 * 5 4 3 8 8 C 1.52992 * 109.47176 * 177.40230 * 7 5 4 9 9 N 1.46900 * 109.47442 * 177.31374 * 8 7 5 10 10 C 1.48559 * 111.00309 * 174.96899 * 9 8 7 11 11 C 1.54374 * 104.59367 * 200.96094 * 10 9 8 12 12 C 1.54262 * 105.06550 * 23.85286 * 11 10 9 13 13 H 1.08999 * 110.31986 * 241.10857 * 12 11 10 14 14 C 1.50690 * 110.32688 * 118.99742 * 12 11 10 15 15 H 1.08001 * 119.99961 * 242.83062 * 14 12 11 16 16 C 1.37874 * 120.00308 * 62.83385 * 14 12 11 17 17 N 1.31520 * 119.99829 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00459 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47472 * 89.99277 * 18 16 14 20 20 H 1.48497 * 109.47352 * 209.99855 * 18 16 14 21 21 H 1.48506 * 109.46728 * 329.99904 * 18 16 14 22 22 C 1.48562 * 110.99975 * 59.54573 * 9 8 7 23 23 C 1.47444 * 111.00022 * 120.83843 * 2 1 3 24 24 H 1.09002 * 109.47311 * 299.15213 * 1 2 3 25 25 H 1.08991 * 109.47632 * 59.15809 * 1 2 3 26 26 H 1.08998 * 109.46719 * 179.16185 * 1 2 3 27 27 H 1.09001 * 110.37220 * 265.19125 * 3 2 1 28 28 H 1.08994 * 110.37625 * 27.53842 * 3 2 1 29 29 H 1.08997 * 111.14386 * 205.04663 * 4 3 2 30 30 H 1.09000 * 110.92439 * 81.16820 * 4 3 2 31 31 H 1.08997 * 109.46905 * 57.40272 * 7 5 4 32 32 H 1.09001 * 109.46860 * 297.40464 * 7 5 4 33 33 H 1.09000 * 109.47241 * 57.31204 * 8 7 5 34 34 H 1.09004 * 109.47371 * 297.31284 * 8 7 5 35 35 H 1.08997 * 110.41441 * 82.18031 * 10 9 8 36 36 H 1.09005 * 110.50894 * 319.78368 * 10 9 8 37 37 H 1.08999 * 110.32778 * 264.95264 * 11 10 9 38 38 H 1.09003 * 110.32351 * 142.74671 * 11 10 9 39 39 H 0.96993 * 120.00026 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.40908 * 40.26528 * 22 9 8 41 41 H 1.08998 * 110.41334 * 277.82549 * 22 9 8 42 42 H 1.09005 * 109.88432 * 117.34099 * 23 2 1 43 43 H 1.08992 * 110.02513 * 356.23168 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3052 1.3062 0.8330 5 6 2.9158 0.2822 1.9315 6 1 2.3752 0.7725 2.7411 7 6 4.1570 -0.4337 2.4680 8 6 3.7492 -1.3880 3.5922 9 7 4.9308 -2.1225 4.0638 10 6 4.5972 -2.9711 5.2366 11 6 5.9530 -3.2298 5.9279 12 6 6.8560 -2.0580 5.4906 13 1 7.7202 -2.4307 4.9408 14 6 7.3029 -1.2651 6.6917 15 1 7.0132 -0.2297 6.7935 16 6 8.0818 -1.8615 7.6605 17 7 8.4343 -3.1225 7.5367 18 14 8.6352 -0.8789 9.1497 19 1 7.6268 -1.0098 10.2319 20 1 9.9429 -1.3966 9.6263 21 1 8.7759 0.5511 8.7747 22 6 5.9697 -1.1899 4.5718 23 6 1.9974 -0.7056 1.1819 24 1 -0.3634 0.5006 0.8975 25 1 -0.3634 0.5268 -0.8822 26 1 -0.3633 -1.0276 -0.0150 27 1 2.2147 1.7039 -1.0182 28 1 1.2889 2.0592 0.4724 29 1 3.5481 2.2746 1.2703 30 1 4.1321 0.9343 0.2280 31 1 4.8624 0.3021 2.8540 32 1 4.6262 -0.9997 1.6633 33 1 3.0078 -2.0941 3.2184 34 1 3.3234 -0.8168 4.4172 35 1 4.1510 -3.9109 4.9112 36 1 3.9217 -2.4435 5.9100 37 1 6.3742 -4.1776 5.5928 38 1 5.8317 -3.2304 7.0111 39 1 8.9819 -3.5421 8.2185 40 1 5.5097 -0.3817 5.1404 41 1 6.5568 -0.7884 3.7459 42 1 2.5698 -1.5784 0.8674 43 1 1.1772 -1.0142 1.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:08 Heat of formation + Delta-G solvation = -5.551760 kcal Electronic energy + Delta-G solvation = -18927.788045 eV Core-core repulsion = 16199.932999 eV Total energy + Delta-G solvation = -2727.855046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.36311 -37.96061 -34.35212 -32.79123 -31.04293 -29.38517 -28.21683 -26.96681 -25.45072 -24.37366 -22.18024 -21.18347 -20.16878 -19.98397 -19.08709 -16.34791 -16.31267 -15.66061 -15.09540 -14.75284 -14.41481 -14.13334 -13.85457 -13.47099 -13.44068 -12.92407 -12.65974 -12.28900 -11.96928 -11.73097 -11.64733 -11.46976 -11.38203 -11.03273 -10.99146 -10.83972 -10.65062 -10.58257 -10.37898 -10.18851 -10.06497 -9.70457 -9.23565 -8.70934 -8.50553 -8.36694 -7.76153 -6.00393 -4.04201 3.29928 3.36983 3.39871 3.85826 4.40446 4.44760 4.53451 4.69243 4.91464 5.11425 5.16881 5.20839 5.31790 5.34363 5.38347 5.47681 5.50506 5.62648 5.71734 5.77454 5.86570 5.89623 5.92320 5.98272 6.13115 6.14849 6.26006 6.34121 6.47054 6.49890 6.58376 6.77333 6.87486 6.92343 7.15754 7.22072 7.58401 7.70722 7.79116 7.91734 8.02673 8.48583 8.99099 9.59697 11.08941 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043094 B = 0.003829 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.591065 B = 7311.481068 C = 7669.830649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.040 3.960 4 C -0.125 4.125 5 C -0.107 4.107 6 H 0.072 0.928 7 C -0.104 4.104 8 C 0.046 3.954 9 N -0.517 5.517 10 C 0.032 3.968 11 C -0.092 4.092 12 C 0.047 3.953 13 H 0.033 0.967 14 C -0.516 4.516 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.041 3.959 23 C 0.045 3.955 24 H 0.025 0.975 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.260 0.740 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 6.230 -11.963 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.087 4.087 4 C -0.163 4.163 5 C -0.127 4.127 6 H 0.090 0.910 7 C -0.142 4.142 8 C -0.083 4.083 9 N -0.240 5.240 10 C -0.096 4.096 11 C -0.131 4.131 12 C 0.028 3.972 13 H 0.052 0.948 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.086 4.086 23 C -0.082 4.082 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.065 5.503 -12.790 19.093 hybrid contribution -0.416 1.384 2.356 2.763 sum -13.481 6.887 -10.434 18.385 Atomic orbital electron populations 1.22530 0.87995 1.01996 1.00346 1.63591 1.07675 1.14382 1.40427 1.23092 0.95814 0.89403 1.00402 1.22804 0.97544 0.99250 0.96712 1.22386 0.97000 0.96063 0.97245 0.91006 1.21556 0.96140 0.98003 0.98505 1.22230 0.93797 0.95695 0.96530 1.65417 1.08291 1.19159 1.31175 1.23170 0.99277 0.96236 0.90933 1.22205 0.92037 0.99345 0.99500 1.19375 0.93049 0.91591 0.93190 0.94843 1.21199 1.31809 0.97157 1.05250 0.92813 1.24972 0.95929 0.94931 0.98146 1.69988 1.36922 1.11037 1.34549 0.86646 0.78072 0.80392 0.83195 1.20780 1.21215 1.19950 1.23268 0.93416 0.94790 0.97130 1.22970 0.97772 0.97617 0.89863 0.95640 0.91602 0.91405 0.90362 0.93835 0.90833 0.90307 0.91537 0.90824 0.91691 0.95618 0.92170 0.95224 0.93623 0.91673 0.93042 0.94921 0.92219 0.89886 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.07 0.55 0.72 16 2 N -0.54 -5.76 5.45 -239.38 -1.30 -7.06 16 3 C 0.04 0.39 6.73 -2.18 -0.01 0.37 16 4 C -0.13 -1.26 6.55 -24.47 -0.16 -1.42 16 5 C -0.11 -1.20 2.94 -88.80 -0.26 -1.47 16 6 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.10 -1.40 4.38 -26.74 -0.12 -1.52 16 8 C 0.05 0.72 4.83 -3.83 -0.02 0.70 16 9 N -0.52 -9.95 5.45 -229.98 -1.25 -11.21 16 10 C 0.03 0.63 6.49 -2.19 -0.01 0.62 16 11 C -0.09 -2.21 5.80 -25.35 -0.15 -2.35 16 12 C 0.05 1.19 2.96 -90.39 -0.27 0.93 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.52 -14.21 8.35 -34.45 -0.29 -14.50 16 15 H 0.05 1.46 7.57 -52.49 -0.40 1.07 16 16 C 0.06 1.73 5.12 -17.82 -0.09 1.64 16 17 N -0.89 -25.61 12.47 55.43 0.69 -24.92 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.04 0.88 4.86 -2.18 -0.01 0.87 16 23 C 0.05 0.50 5.71 -2.84 -0.02 0.49 16 24 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.39 7.78 -51.93 -0.40 -0.01 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 31 H 0.07 0.96 7.07 -51.93 -0.37 0.59 16 32 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 33 H 0.06 0.93 7.51 -51.93 -0.39 0.54 16 34 H 0.03 0.41 7.97 -51.93 -0.41 0.00 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.58 7.90 -51.93 -0.41 0.17 16 37 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.69 7.33 -51.93 -0.38 1.31 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.03 0.71 7.54 -51.93 -0.39 0.32 16 41 H 0.06 1.22 7.73 -51.93 -0.40 0.82 16 42 H 0.08 0.99 7.73 -51.93 -0.40 0.59 16 43 H 0.05 0.56 7.59 -51.93 -0.39 0.17 16 LS Contribution 329.39 15.07 4.96 4.96 Total: -1.00 -28.55 329.39 -10.90 -39.45 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.12 Total: -2.58 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.86 Total: -14.91 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -1.87 Total: -43.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.55 -10.90 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.902 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds