Wall clock time and date at job start Mon Mar 30 2020 04:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47849 * 110.99493 * 2 1 4 4 C 1.55123 * 104.90175 * 146.24203 * 3 2 1 5 5 C 1.55142 * 101.55848 * 323.15662 * 4 3 2 6 6 H 1.08998 * 110.70404 * 276.96785 * 5 4 3 7 7 C 1.52999 * 110.70515 * 153.90773 * 5 4 3 8 8 C 1.52992 * 109.47176 * 177.40230 * 7 5 4 9 9 N 1.46900 * 109.47442 * 177.31374 * 8 7 5 10 10 C 1.48559 * 111.00309 * 174.96899 * 9 8 7 11 11 C 1.54374 * 104.59367 * 200.96094 * 10 9 8 12 12 C 1.54262 * 105.06550 * 23.85286 * 11 10 9 13 13 H 1.08999 * 110.31986 * 241.10857 * 12 11 10 14 14 C 1.50690 * 110.32688 * 118.99742 * 12 11 10 15 15 H 1.08001 * 119.99961 * 242.83062 * 14 12 11 16 16 C 1.37874 * 120.00308 * 62.83385 * 14 12 11 17 17 N 1.31520 * 119.99829 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00459 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47472 * 89.99277 * 18 16 14 20 20 H 1.48497 * 109.47352 * 209.99855 * 18 16 14 21 21 H 1.48506 * 109.46728 * 329.99904 * 18 16 14 22 22 C 1.48562 * 110.99975 * 59.54573 * 9 8 7 23 23 C 1.47444 * 111.00022 * 120.83843 * 2 1 3 24 24 H 1.09002 * 109.47311 * 299.15213 * 1 2 3 25 25 H 1.08991 * 109.47632 * 59.15809 * 1 2 3 26 26 H 1.08998 * 109.46719 * 179.16185 * 1 2 3 27 27 H 1.09001 * 110.37220 * 265.19125 * 3 2 1 28 28 H 1.08994 * 110.37625 * 27.53842 * 3 2 1 29 29 H 1.08997 * 111.14386 * 205.04663 * 4 3 2 30 30 H 1.09000 * 110.92439 * 81.16820 * 4 3 2 31 31 H 1.08997 * 109.46905 * 57.40272 * 7 5 4 32 32 H 1.09001 * 109.46860 * 297.40464 * 7 5 4 33 33 H 1.09000 * 109.47241 * 57.31204 * 8 7 5 34 34 H 1.09004 * 109.47371 * 297.31284 * 8 7 5 35 35 H 1.08997 * 110.41441 * 82.18031 * 10 9 8 36 36 H 1.09005 * 110.50894 * 319.78368 * 10 9 8 37 37 H 1.08999 * 110.32778 * 264.95264 * 11 10 9 38 38 H 1.09003 * 110.32351 * 142.74671 * 11 10 9 39 39 H 0.96993 * 120.00026 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.40908 * 40.26528 * 22 9 8 41 41 H 1.08998 * 110.41334 * 277.82549 * 22 9 8 42 42 H 1.09005 * 109.88432 * 117.34099 * 23 2 1 43 43 H 1.08992 * 110.02513 * 356.23168 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3052 1.3062 0.8330 5 6 2.9158 0.2822 1.9315 6 1 2.3752 0.7725 2.7411 7 6 4.1570 -0.4337 2.4680 8 6 3.7492 -1.3880 3.5922 9 7 4.9308 -2.1225 4.0638 10 6 4.5972 -2.9711 5.2366 11 6 5.9530 -3.2298 5.9279 12 6 6.8560 -2.0580 5.4906 13 1 7.7202 -2.4307 4.9408 14 6 7.3029 -1.2651 6.6917 15 1 7.0132 -0.2297 6.7935 16 6 8.0818 -1.8615 7.6605 17 7 8.4343 -3.1225 7.5367 18 14 8.6352 -0.8789 9.1497 19 1 7.6268 -1.0098 10.2319 20 1 9.9429 -1.3966 9.6263 21 1 8.7759 0.5511 8.7747 22 6 5.9697 -1.1899 4.5718 23 6 1.9974 -0.7056 1.1819 24 1 -0.3634 0.5006 0.8975 25 1 -0.3634 0.5268 -0.8822 26 1 -0.3633 -1.0276 -0.0150 27 1 2.2147 1.7039 -1.0182 28 1 1.2889 2.0592 0.4724 29 1 3.5481 2.2746 1.2703 30 1 4.1321 0.9343 0.2280 31 1 4.8624 0.3021 2.8540 32 1 4.6262 -0.9997 1.6633 33 1 3.0078 -2.0941 3.2184 34 1 3.3234 -0.8168 4.4172 35 1 4.1510 -3.9109 4.9112 36 1 3.9217 -2.4435 5.9100 37 1 6.3742 -4.1776 5.5928 38 1 5.8317 -3.2304 7.0111 39 1 8.9819 -3.5421 8.2185 40 1 5.5097 -0.3817 5.1404 41 1 6.5568 -0.7884 3.7459 42 1 2.5698 -1.5784 0.8674 43 1 1.1772 -1.0142 1.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:07 Heat of formation + Delta-G solvation = -23.998840 kcal Electronic energy + Delta-G solvation = -18928.587970 eV Core-core repulsion = 16199.932999 eV Total energy + Delta-G solvation = -2728.654972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33345 -39.47694 -35.76200 -34.43415 -32.39045 -30.65271 -29.86955 -28.08897 -26.82927 -25.87200 -23.50552 -22.07178 -21.58331 -21.36388 -20.64230 -18.37492 -17.18258 -16.91436 -16.67612 -16.30328 -15.75779 -15.45267 -14.92211 -14.79807 -14.41187 -14.13775 -14.03133 -13.64718 -13.38876 -13.12616 -12.96386 -12.71827 -12.56797 -12.54207 -12.36758 -12.23478 -12.10064 -12.05904 -11.73058 -11.54144 -11.42979 -11.30449 -11.15863 -10.79005 -10.48648 -9.32890 -9.27035 -8.13818 -6.24993 1.40397 1.41099 1.51523 2.41785 3.09987 3.16620 3.19873 3.61548 3.78357 3.91109 4.11849 4.15928 4.29106 4.39722 4.43268 4.47680 4.51338 4.57841 4.59669 4.62063 4.67214 4.73429 4.84354 4.86387 4.95445 4.99366 5.01911 5.08682 5.15015 5.15759 5.25301 5.29375 5.34544 5.46100 5.60369 5.76401 5.87808 5.97617 6.01048 6.14110 6.30478 6.40984 6.86291 7.42801 8.95393 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043094 B = 0.003829 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.591065 B = 7311.481068 C = 7669.830649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.552 5.552 3 C 0.042 3.958 4 C -0.124 4.124 5 C -0.101 4.101 6 H 0.074 0.926 7 C -0.095 4.095 8 C 0.048 3.952 9 N -0.521 5.521 10 C 0.042 3.958 11 C -0.086 4.086 12 C 0.037 3.963 13 H -0.003 1.003 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.057 3.943 23 C 0.048 3.952 24 H 0.028 0.972 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.030 0.970 38 H 0.038 0.962 39 H 0.261 0.739 40 H 0.030 0.970 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.004 7.470 -12.348 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.277 5.277 3 C -0.085 4.085 4 C -0.162 4.162 5 C -0.121 4.121 6 H 0.093 0.907 7 C -0.133 4.133 8 C -0.080 4.080 9 N -0.245 5.245 10 C -0.086 4.086 11 C -0.125 4.125 12 C 0.018 3.982 13 H 0.016 0.984 14 C -0.571 4.571 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.071 4.071 23 C -0.080 4.080 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.592 6.755 -13.189 20.796 hybrid contribution 0.055 0.970 2.427 2.614 sum -14.536 7.725 -10.762 19.667 Atomic orbital electron populations 1.22573 0.86865 1.02451 1.01005 1.63587 1.08879 1.15019 1.40180 1.23116 0.95526 0.89065 1.00817 1.22799 0.97750 0.99289 0.96315 1.22301 0.95924 0.96250 0.97624 0.90710 1.21455 0.97015 0.97341 0.97522 1.22328 0.92496 0.96186 0.97015 1.65409 1.09567 1.19138 1.30352 1.23062 0.96839 0.97644 0.91067 1.21999 0.94250 0.98084 0.98124 1.19366 0.92901 0.92759 0.93223 0.98433 1.21522 1.32102 0.97353 1.06160 0.92845 1.25777 0.95998 0.95897 1.01044 1.70115 1.37496 1.12543 1.35537 0.85597 0.77629 0.79130 0.79558 1.20077 1.20908 1.19135 1.22992 0.93476 0.94180 0.96433 1.22899 0.97750 0.97241 0.90119 0.95316 0.90560 0.91136 0.89648 0.92996 0.89881 0.90878 0.92519 0.91421 0.89958 0.95563 0.89851 0.94527 0.95126 0.94324 0.93009 0.95184 0.91565 0.90997 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.12 127.69 1.16 1.46 16 2 N -0.55 -10.67 5.45 -911.26 -4.96 -15.64 16 3 C 0.04 0.71 6.73 86.85 0.58 1.29 16 4 C -0.12 -2.24 6.55 32.06 0.21 -2.03 16 5 C -0.10 -2.07 2.94 -9.61 -0.03 -2.10 16 6 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 7 C -0.10 -2.42 4.38 30.59 0.13 -2.28 16 8 C 0.05 1.39 4.83 86.30 0.42 1.81 16 9 N -0.52 -19.47 5.45 -881.51 -4.80 -24.27 16 10 C 0.04 1.62 6.49 86.45 0.56 2.18 16 11 C -0.09 -4.19 5.80 31.49 0.18 -4.01 16 12 C 0.04 1.91 2.96 -10.65 -0.03 1.87 16 13 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 14 C -0.53 -29.81 8.35 25.60 0.21 -29.59 16 15 H 0.05 2.92 7.57 -2.91 -0.02 2.90 16 16 C 0.01 0.67 5.12 84.65 0.43 1.10 16 17 N -0.92 -54.19 12.47 21.45 0.27 -53.92 16 18 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 C 0.06 2.42 4.86 86.45 0.42 2.84 16 23 C 0.05 0.96 5.71 86.64 0.49 1.46 16 24 H 0.03 0.42 8.10 -2.39 -0.02 0.40 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 0.79 7.78 -2.39 -0.02 0.77 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 31 H 0.06 1.55 7.07 -2.39 -0.02 1.54 16 32 H 0.07 1.81 8.00 -2.39 -0.02 1.79 16 33 H 0.08 2.14 7.51 -2.39 -0.02 2.13 16 34 H 0.03 0.78 7.97 -2.38 -0.02 0.76 16 35 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.04 1.38 7.90 -2.38 -0.02 1.36 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 2.05 7.33 -2.39 -0.02 2.03 16 39 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.03 1.29 7.54 -2.39 -0.02 1.27 16 41 H 0.07 2.70 7.73 -2.39 -0.02 2.68 16 42 H 0.07 1.61 7.73 -2.38 -0.02 1.59 16 43 H 0.06 1.10 7.59 -2.39 -0.02 1.08 16 Total: -1.00 -61.13 329.39 -1.78 -62.91 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.93 Total: 11.04 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.76 Total: -26.00 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -9.50 Total: -93.83 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -61.13 -1.78 -62.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.915 kcal (2) G-P(sol) polarization free energy of solvation -61.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds