Wall clock time and date at job start Mon Mar 30 2020 04:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47843 * 110.99888 * 2 1 4 4 C 1.54904 * 104.79405 * 213.63369 * 3 2 1 5 5 C 1.55139 * 101.65629 * 37.06983 * 4 3 2 6 6 H 1.09003 * 110.70684 * 82.72539 * 5 4 3 7 7 C 1.52999 * 110.70659 * 205.96492 * 5 4 3 8 8 C 1.53000 * 109.47051 * 180.02562 * 7 5 4 9 9 N 1.46899 * 109.47228 * 179.97438 * 8 7 5 10 10 C 1.48529 * 111.00015 * 52.60435 * 9 8 7 11 11 C 1.54939 * 103.22932 * 159.72317 * 10 9 8 12 12 C 1.54601 * 102.91693 * 322.58230 * 11 10 9 13 13 H 1.09004 * 110.38924 * 262.99710 * 12 11 10 14 14 C 1.50700 * 110.30578 * 140.87745 * 12 11 10 15 15 H 1.07996 * 119.99827 * 244.27923 * 14 12 11 16 16 C 1.37875 * 120.00135 * 64.28356 * 14 12 11 17 17 N 1.31515 * 120.00229 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99748 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47162 * 89.99979 * 18 16 14 20 20 H 1.48498 * 109.47071 * 209.99676 * 18 16 14 21 21 H 1.48496 * 109.47387 * 329.99962 * 18 16 14 22 22 C 1.47907 * 110.99852 * 169.99529 * 9 8 7 23 23 C 1.47446 * 111.00255 * 239.15549 * 2 1 3 24 24 H 1.08997 * 109.46899 * 180.84249 * 1 2 3 25 25 H 1.08992 * 109.47422 * 300.84624 * 1 2 3 26 26 H 1.08998 * 109.47047 * 60.84657 * 1 2 3 27 27 H 1.08998 * 110.37465 * 332.46027 * 3 2 1 28 28 H 1.09003 * 110.37404 * 94.80784 * 3 2 1 29 29 H 1.09005 * 110.99350 * 278.97811 * 4 3 2 30 30 H 1.09000 * 111.02232 * 155.17788 * 4 3 2 31 31 H 1.08997 * 109.47052 * 300.05185 * 7 5 4 32 32 H 1.08992 * 109.47479 * 60.05636 * 7 5 4 33 33 H 1.09007 * 109.47069 * 299.99704 * 8 7 5 34 34 H 1.08999 * 109.47606 * 59.99529 * 8 7 5 35 35 H 1.09006 * 110.66717 * 278.15349 * 10 9 8 36 36 H 1.09004 * 110.66792 * 41.28477 * 10 9 8 37 37 H 1.09000 * 110.71888 * 204.23069 * 11 10 9 38 38 H 1.08990 * 110.87807 * 81.01019 * 11 10 9 39 39 H 0.97002 * 120.00098 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.92091 * 333.51110 * 22 9 8 41 41 H 1.09008 * 109.91320 * 94.80378 * 22 9 8 42 42 H 1.08997 * 109.88511 * 242.66682 * 23 2 1 43 43 H 1.08995 * 109.88851 * 3.68984 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 -0.8295 5 6 2.9159 0.2821 -1.9314 6 1 2.3745 0.7746 -2.7392 7 6 4.1571 -0.4339 -2.4678 8 6 3.7421 -1.4314 -3.5512 9 7 4.9338 -2.1184 -4.0667 10 6 5.7298 -2.7067 -2.9593 11 6 6.5852 -3.7848 -3.6712 12 6 5.6132 -4.3528 -4.7308 13 1 5.1425 -5.2650 -4.3641 14 6 6.3454 -4.6248 -6.0196 15 1 6.0916 -4.0719 -6.9119 16 6 7.3394 -5.5795 -6.0596 17 7 7.6488 -6.2525 -4.9729 18 14 8.2464 -5.9171 -7.6573 19 1 9.4357 -5.0325 -7.7477 20 1 8.6817 -7.3365 -7.6890 21 1 7.3429 -5.6506 -8.8053 22 6 4.5565 -3.2522 -4.9384 23 6 1.9975 -0.7057 -1.1818 24 1 -0.3633 -1.0275 0.0151 25 1 -0.3634 0.5269 0.8822 26 1 -0.3633 0.5006 -0.8975 27 1 1.2889 2.0592 -0.4724 28 1 2.2147 1.7038 1.0182 29 1 4.1302 0.9281 -0.2242 30 1 3.5501 2.2718 -1.2640 31 1 4.8442 0.2984 -2.8916 32 1 4.6497 -0.9660 -1.6541 33 1 3.0551 -2.1637 -3.1269 34 1 3.2491 -0.8998 -4.3651 35 1 6.3675 -1.9511 -2.5002 36 1 5.0762 -3.1632 -2.2159 37 1 6.8880 -4.5620 -2.9696 38 1 7.4567 -3.3366 -4.1481 39 1 8.3484 -6.9239 -5.0009 40 1 3.5717 -3.6251 -4.6571 41 1 4.5520 -2.9335 -5.9809 42 1 2.5697 -1.5785 -0.8673 43 1 1.1755 -1.0145 -1.8276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:11 Heat of formation + Delta-G solvation = -4.027810 kcal Electronic energy + Delta-G solvation = -18966.397068 eV Core-core repulsion = 16238.608105 eV Total energy + Delta-G solvation = -2727.788963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42149 -37.97744 -34.37054 -32.73427 -31.03645 -29.38255 -28.19580 -27.21289 -25.46813 -23.99318 -22.45571 -21.19797 -20.48397 -19.53182 -19.11254 -16.56160 -16.36290 -15.74282 -14.98555 -14.72006 -14.34953 -14.23906 -13.81252 -13.56550 -13.31721 -12.78270 -12.60717 -12.36409 -11.97841 -11.88967 -11.77285 -11.49364 -11.21195 -11.10041 -10.91689 -10.79493 -10.61569 -10.53379 -10.40947 -10.37105 -10.10393 -9.62079 -9.21826 -8.74017 -8.51435 -8.36012 -7.65149 -5.97272 -3.98897 3.34271 3.40594 3.44013 3.84179 4.39548 4.48178 4.51293 4.68859 4.85348 5.08305 5.14662 5.18139 5.30832 5.35782 5.43497 5.46733 5.50779 5.61498 5.63032 5.72874 5.83902 5.87772 5.92471 5.93919 6.06837 6.17645 6.26083 6.30154 6.39055 6.42920 6.63793 6.76515 6.86400 6.92350 7.17926 7.25797 7.51466 7.69920 7.86428 7.94987 8.07637 8.48952 9.02529 9.64224 11.12864 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.053583 B = 0.003672 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.431384 B = 7622.431190 C = 7668.273866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.041 3.959 4 C -0.125 4.125 5 C -0.107 4.107 6 H 0.074 0.926 7 C -0.106 4.106 8 C 0.047 3.953 9 N -0.517 5.517 10 C 0.030 3.970 11 C -0.092 4.092 12 C 0.039 3.961 13 H 0.029 0.971 14 C -0.507 4.507 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.045 3.955 23 C 0.045 3.955 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.259 0.741 40 H 0.018 0.982 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 13.501 9.040 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.087 4.087 4 C -0.163 4.163 5 C -0.126 4.126 6 H 0.092 0.908 7 C -0.144 4.144 8 C -0.081 4.081 9 N -0.241 5.241 10 C -0.097 4.097 11 C -0.131 4.131 12 C 0.020 3.980 13 H 0.047 0.953 14 C -0.545 4.545 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.083 4.083 23 C -0.083 4.083 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.469 13.479 9.264 19.420 hybrid contribution -0.347 -0.436 -1.120 1.251 sum -10.816 13.043 8.144 18.800 Atomic orbital electron populations 1.22531 0.87927 1.02059 1.00344 1.63580 1.07744 1.14347 1.40442 1.23057 0.95778 0.89446 1.00427 1.22768 0.97563 0.99237 0.96728 1.22385 0.96967 0.96042 0.97251 0.90795 1.21608 0.96251 0.98253 0.98265 1.22278 0.92866 0.96384 0.96616 1.64793 1.17524 1.25707 1.16083 1.23328 0.96301 0.97187 0.92934 1.22403 0.98224 0.94944 0.97533 1.19493 0.91326 0.91929 0.95205 0.95287 1.21188 1.18336 1.19860 0.95114 0.92517 1.24984 0.97079 0.95883 0.96177 1.69971 1.31119 1.24600 1.27344 0.86613 0.80140 0.77267 0.84084 1.20716 1.21379 1.19966 1.23095 0.97074 0.91115 0.96987 1.22968 0.97840 0.97563 0.89922 0.91379 0.91575 0.95613 0.93782 0.90378 0.90386 0.90843 0.91056 0.91412 0.95440 0.91717 0.91878 0.95356 0.92407 0.92057 0.93137 0.96323 0.91235 0.90164 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.06 0.55 0.73 16 2 N -0.54 -5.84 5.44 -239.53 -1.30 -7.14 16 3 C 0.04 0.38 6.73 -2.30 -0.02 0.36 16 4 C -0.12 -1.20 6.52 -24.60 -0.16 -1.36 16 5 C -0.11 -1.16 2.98 -88.80 -0.26 -1.42 16 6 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.11 -1.37 4.26 -26.73 -0.11 -1.48 16 8 C 0.05 0.73 4.87 -3.82 -0.02 0.71 16 9 N -0.52 -10.05 5.40 -230.45 -1.24 -11.29 16 10 C 0.03 0.59 5.10 -1.90 -0.01 0.58 16 11 C -0.09 -2.20 5.75 -24.87 -0.14 -2.34 16 12 C 0.04 1.00 2.87 -90.42 -0.26 0.74 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.51 -14.11 8.37 -34.44 -0.29 -14.40 16 15 H 0.06 1.57 7.34 -52.49 -0.39 1.18 16 16 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 17 N -0.89 -25.87 12.62 55.43 0.70 -25.17 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.04 0.97 6.35 -2.75 -0.02 0.95 16 23 C 0.04 0.51 5.64 -2.84 -0.02 0.49 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 27 H 0.04 0.38 7.78 -51.93 -0.40 -0.02 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.78 8.05 -51.93 -0.42 0.37 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 33 H 0.03 0.43 7.16 -51.93 -0.37 0.06 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 36 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 37 H 0.06 1.43 8.12 -51.93 -0.42 1.01 16 38 H 0.06 1.57 7.85 -51.93 -0.41 1.16 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 41 H 0.07 1.55 7.39 -51.92 -0.38 1.17 16 42 H 0.08 1.02 7.76 -51.93 -0.40 0.61 16 43 H 0.05 0.59 7.58 -51.93 -0.39 0.20 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -28.84 328.76 -10.85 -39.69 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -8.08 Total: -2.75 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.85 Total: -14.85 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -1.85 Total: -43.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.84 -10.85 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.665 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds