Wall clock time and date at job start Mon Mar 30 2020 04:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47843 * 110.99888 * 2 1 4 4 C 1.54904 * 104.79405 * 213.63369 * 3 2 1 5 5 C 1.55139 * 101.65629 * 37.06983 * 4 3 2 6 6 H 1.09003 * 110.70684 * 82.72539 * 5 4 3 7 7 C 1.52999 * 110.70659 * 205.96492 * 5 4 3 8 8 C 1.53000 * 109.47051 * 180.02562 * 7 5 4 9 9 N 1.46899 * 109.47228 * 179.97438 * 8 7 5 10 10 C 1.48529 * 111.00015 * 52.60435 * 9 8 7 11 11 C 1.54939 * 103.22932 * 159.72317 * 10 9 8 12 12 C 1.54601 * 102.91693 * 322.58230 * 11 10 9 13 13 H 1.09004 * 110.38924 * 262.99710 * 12 11 10 14 14 C 1.50700 * 110.30578 * 140.87745 * 12 11 10 15 15 H 1.07996 * 119.99827 * 244.27923 * 14 12 11 16 16 C 1.37875 * 120.00135 * 64.28356 * 14 12 11 17 17 N 1.31515 * 120.00229 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99748 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47162 * 89.99979 * 18 16 14 20 20 H 1.48498 * 109.47071 * 209.99676 * 18 16 14 21 21 H 1.48496 * 109.47387 * 329.99962 * 18 16 14 22 22 C 1.47907 * 110.99852 * 169.99529 * 9 8 7 23 23 C 1.47446 * 111.00255 * 239.15549 * 2 1 3 24 24 H 1.08997 * 109.46899 * 180.84249 * 1 2 3 25 25 H 1.08992 * 109.47422 * 300.84624 * 1 2 3 26 26 H 1.08998 * 109.47047 * 60.84657 * 1 2 3 27 27 H 1.08998 * 110.37465 * 332.46027 * 3 2 1 28 28 H 1.09003 * 110.37404 * 94.80784 * 3 2 1 29 29 H 1.09005 * 110.99350 * 278.97811 * 4 3 2 30 30 H 1.09000 * 111.02232 * 155.17788 * 4 3 2 31 31 H 1.08997 * 109.47052 * 300.05185 * 7 5 4 32 32 H 1.08992 * 109.47479 * 60.05636 * 7 5 4 33 33 H 1.09007 * 109.47069 * 299.99704 * 8 7 5 34 34 H 1.08999 * 109.47606 * 59.99529 * 8 7 5 35 35 H 1.09006 * 110.66717 * 278.15349 * 10 9 8 36 36 H 1.09004 * 110.66792 * 41.28477 * 10 9 8 37 37 H 1.09000 * 110.71888 * 204.23069 * 11 10 9 38 38 H 1.08990 * 110.87807 * 81.01019 * 11 10 9 39 39 H 0.97002 * 120.00098 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.92091 * 333.51110 * 22 9 8 41 41 H 1.09008 * 109.91320 * 94.80378 * 22 9 8 42 42 H 1.08997 * 109.88511 * 242.66682 * 23 2 1 43 43 H 1.08995 * 109.88851 * 3.68984 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 -0.8295 5 6 2.9159 0.2821 -1.9314 6 1 2.3745 0.7746 -2.7392 7 6 4.1571 -0.4339 -2.4678 8 6 3.7421 -1.4314 -3.5512 9 7 4.9338 -2.1184 -4.0667 10 6 5.7298 -2.7067 -2.9593 11 6 6.5852 -3.7848 -3.6712 12 6 5.6132 -4.3528 -4.7308 13 1 5.1425 -5.2650 -4.3641 14 6 6.3454 -4.6248 -6.0196 15 1 6.0916 -4.0719 -6.9119 16 6 7.3394 -5.5795 -6.0596 17 7 7.6488 -6.2525 -4.9729 18 14 8.2464 -5.9171 -7.6573 19 1 9.4357 -5.0325 -7.7477 20 1 8.6817 -7.3365 -7.6890 21 1 7.3429 -5.6506 -8.8053 22 6 4.5565 -3.2522 -4.9384 23 6 1.9975 -0.7057 -1.1818 24 1 -0.3633 -1.0275 0.0151 25 1 -0.3634 0.5269 0.8822 26 1 -0.3633 0.5006 -0.8975 27 1 1.2889 2.0592 -0.4724 28 1 2.2147 1.7038 1.0182 29 1 4.1302 0.9281 -0.2242 30 1 3.5501 2.2718 -1.2640 31 1 4.8442 0.2984 -2.8916 32 1 4.6497 -0.9660 -1.6541 33 1 3.0551 -2.1637 -3.1269 34 1 3.2491 -0.8998 -4.3651 35 1 6.3675 -1.9511 -2.5002 36 1 5.0762 -3.1632 -2.2159 37 1 6.8880 -4.5620 -2.9696 38 1 7.4567 -3.3366 -4.1481 39 1 8.3484 -6.9239 -5.0009 40 1 3.5717 -3.6251 -4.6571 41 1 4.5520 -2.9335 -5.9809 42 1 2.5697 -1.5785 -0.8673 43 1 1.1755 -1.0145 -1.8276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:10 Heat of formation + Delta-G solvation = -22.775851 kcal Electronic energy + Delta-G solvation = -18967.210044 eV Core-core repulsion = 16238.608105 eV Total energy + Delta-G solvation = -2728.601939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38911 -39.47321 -35.77589 -34.37393 -32.39322 -30.54980 -29.99556 -28.32606 -26.63682 -25.70341 -23.73075 -22.04224 -21.71721 -21.22431 -20.51268 -18.58250 -17.29613 -16.90506 -16.49402 -16.25236 -15.84731 -15.46519 -14.93714 -14.70330 -14.32832 -14.09389 -13.97578 -13.65361 -13.51893 -13.24337 -13.00054 -12.66821 -12.56419 -12.51662 -12.40938 -12.23983 -12.12423 -11.87319 -11.67068 -11.58069 -11.48511 -11.43639 -11.08727 -10.81937 -10.49251 -9.28636 -9.21629 -8.12561 -6.21386 1.41941 1.42575 1.52931 2.44172 3.07472 3.16294 3.21902 3.62197 3.78090 3.85766 4.15495 4.18627 4.30250 4.38101 4.42877 4.46211 4.51018 4.53896 4.59039 4.61109 4.64250 4.73943 4.77448 4.91659 4.95551 4.97343 5.01779 5.07366 5.13916 5.17315 5.24073 5.30058 5.38580 5.43539 5.56312 5.73649 5.85132 5.99599 6.12493 6.17704 6.32265 6.40304 6.86955 7.45269 8.97114 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.053583 B = 0.003672 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.431384 B = 7622.431190 C = 7668.273866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.555 5.555 3 C 0.041 3.959 4 C -0.121 4.121 5 C -0.100 4.100 6 H 0.081 0.919 7 C -0.096 4.096 8 C 0.048 3.952 9 N -0.524 5.524 10 C 0.046 3.954 11 C -0.086 4.086 12 C 0.029 3.971 13 H -0.002 1.002 14 C -0.526 4.526 15 H 0.054 0.946 16 C 0.010 3.990 17 N -0.921 5.921 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.055 3.945 23 C 0.045 3.955 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.260 0.740 40 H 0.030 0.970 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 15.256 9.042 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.279 5.279 3 C -0.086 4.086 4 C -0.159 4.159 5 C -0.120 4.120 6 H 0.100 0.900 7 C -0.134 4.134 8 C -0.080 4.080 9 N -0.249 5.249 10 C -0.082 4.082 11 C -0.125 4.125 12 C 0.010 3.990 13 H 0.017 0.983 14 C -0.564 4.564 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.560 5.560 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.072 4.072 23 C -0.082 4.082 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.169 15.251 9.271 21.054 hybrid contribution -0.173 -0.993 -1.086 1.481 sum -11.341 14.258 8.185 19.973 Atomic orbital electron populations 1.22562 0.86908 1.02270 1.01122 1.63559 1.08874 1.15300 1.40166 1.23101 0.95735 0.88849 1.00934 1.22760 0.97527 0.99481 0.96170 1.22309 0.95872 0.96067 0.97750 0.90018 1.21504 0.97213 0.97593 0.97078 1.22370 0.91306 0.96585 0.97698 1.64762 1.19476 1.24545 1.16085 1.23178 0.95982 0.96319 0.92690 1.22179 0.97709 0.95604 0.96970 1.19490 0.92514 0.92136 0.94813 0.98338 1.21524 1.18845 1.20106 0.95960 0.92820 1.25776 0.97901 0.95698 0.99467 1.70092 1.31624 1.25046 1.29267 0.85583 0.78891 0.77170 0.80183 1.20176 1.20924 1.19185 1.22842 0.96310 0.90780 0.97301 1.22893 0.97812 0.97281 0.90258 0.91549 0.90444 0.95121 0.92765 0.89722 0.90978 0.89307 0.90967 0.92065 0.95336 0.90715 0.89764 0.94409 0.94352 0.94427 0.93086 0.95172 0.91954 0.91918 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.12 127.69 1.16 1.48 16 2 N -0.55 -11.00 5.44 -911.74 -4.96 -15.96 16 3 C 0.04 0.66 6.73 86.77 0.58 1.25 16 4 C -0.12 -2.01 6.52 31.98 0.21 -1.80 16 5 C -0.10 -1.94 2.98 -9.61 -0.03 -1.96 16 6 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.10 -2.27 4.26 30.59 0.13 -2.14 16 8 C 0.05 1.40 4.87 86.30 0.42 1.82 16 9 N -0.52 -19.76 5.40 -882.99 -4.76 -24.52 16 10 C 0.05 1.75 5.10 86.65 0.44 2.19 16 11 C -0.09 -4.18 5.75 31.80 0.18 -3.99 16 12 C 0.03 1.53 2.87 -10.66 -0.03 1.50 16 13 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 14 C -0.53 -29.84 8.37 25.60 0.21 -29.62 16 15 H 0.05 3.00 7.34 -2.91 -0.02 2.98 16 16 C 0.01 0.57 5.34 84.65 0.45 1.03 16 17 N -0.92 -54.57 12.62 21.45 0.27 -54.30 16 18 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.06 2.40 6.35 86.44 0.55 2.94 16 23 C 0.05 0.96 5.64 86.64 0.49 1.45 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.03 0.46 8.10 -2.39 -0.02 0.44 16 27 H 0.05 0.77 7.78 -2.39 -0.02 0.75 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.29 8.05 -2.38 -0.02 1.27 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.54 6.71 -2.39 -0.02 1.53 16 33 H 0.03 0.84 7.16 -2.38 -0.02 0.82 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.88 7.67 -2.38 -0.02 2.86 16 36 H 0.04 1.38 8.00 -2.38 -0.02 1.36 16 37 H 0.04 1.96 8.12 -2.39 -0.02 1.94 16 38 H 0.04 1.96 7.85 -2.39 -0.02 1.94 16 39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.03 1.21 7.57 -2.39 -0.02 1.20 16 41 H 0.06 2.77 7.39 -2.38 -0.02 2.75 16 42 H 0.06 1.53 7.76 -2.39 -0.02 1.51 16 43 H 0.05 1.11 7.58 -2.39 -0.02 1.10 16 Total: -1.00 -61.87 328.76 -1.72 -63.59 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.94 Total: 10.50 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 4.78 Total: -25.85 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -9.46 Total: -94.78 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -61.87 -1.72 -63.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.810 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds