Wall clock time and date at job start Mon Mar 30 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48073 * 111.00067 * 2 1 4 4 C 1.50742 * 112.93545 * 192.21930 * 3 2 1 5 5 C 1.54515 * 108.94299 * 92.65624 * 4 3 2 6 6 N 1.40087 * 111.50526 * 283.98584 * 5 4 3 7 7 C 1.46906 * 110.99679 * 188.14945 * 6 5 4 8 8 H 1.09005 * 110.43371 * 294.93037 * 7 6 5 9 9 C 1.54265 * 110.59871 * 172.31872 * 7 6 5 10 10 C 1.54092 * 106.62126 * 217.54626 * 9 7 6 11 11 C 1.54270 * 106.49051 * 0.17041 * 10 9 7 12 12 H 1.09004 * 110.48170 * 264.70895 * 11 10 9 13 13 C 1.50700 * 110.48561 * 142.20156 * 11 10 9 14 14 H 1.07998 * 119.99349 * 243.23570 * 13 11 10 15 15 C 1.37871 * 120.00413 * 63.23903 * 13 11 10 16 16 N 1.31518 * 119.99758 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00171 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47314 * 239.99963 * 17 15 13 20 20 H 1.48500 * 109.47107 * 119.99950 * 17 15 13 21 21 C 1.54889 * 110.48630 * 57.47158 * 7 6 5 22 22 C 1.47687 * 114.56944 * 61.45460 * 6 5 4 23 23 C 1.47752 * 111.00104 * 232.40420 * 2 1 3 24 24 H 1.08997 * 109.47452 * 63.94938 * 1 2 3 25 25 H 1.09002 * 109.46831 * 183.94852 * 1 2 3 26 26 H 1.08999 * 109.47046 * 303.95183 * 1 2 3 27 27 H 1.08999 * 108.78751 * 71.32736 * 3 2 1 28 28 H 1.08994 * 108.69950 * 313.05164 * 3 2 1 29 29 H 1.08999 * 109.56467 * 332.81332 * 4 3 2 30 30 H 1.09008 * 109.55526 * 212.48867 * 4 3 2 31 31 H 1.08994 * 109.07555 * 163.46679 * 5 4 3 32 32 H 1.08996 * 109.07335 * 44.50568 * 5 4 3 33 33 H 1.09009 * 110.02879 * 336.93616 * 9 7 6 34 34 H 1.08992 * 110.03811 * 98.36608 * 9 7 6 35 35 H 1.08992 * 110.15706 * 240.87848 * 10 9 7 36 36 H 1.08994 * 110.00612 * 119.37686 * 10 9 7 37 37 H 0.97004 * 119.99768 * 0.02562 * 16 15 13 38 38 H 1.08992 * 110.75326 * 38.44147 * 21 7 6 39 39 H 1.08992 * 110.91249 * 275.13943 * 21 7 6 40 40 H 1.08997 * 109.74209 * 38.33426 * 22 6 5 41 41 H 1.09007 * 109.73368 * 159.03627 * 22 6 5 42 42 H 1.08997 * 108.99598 * 205.57000 * 23 2 1 43 43 H 1.09005 * 108.98930 * 324.39626 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3824 0.0000 4 6 3.4768 1.4445 -0.2938 5 6 3.6782 1.6434 -1.8128 6 7 3.4535 0.4555 -2.5205 7 6 3.8328 0.6039 -3.9320 8 1 3.1887 1.3324 -4.4246 9 6 3.7642 -0.7554 -4.6582 10 6 4.9466 -0.7876 -5.6458 11 6 5.6926 0.5525 -5.4796 12 1 5.3510 1.2738 -6.2220 13 6 7.1810 0.3452 -5.5934 14 1 7.8215 0.5558 -4.7498 15 6 7.7249 -0.1132 -6.7745 16 7 6.9448 -0.3700 -7.8017 17 14 9.5697 -0.3707 -6.9152 18 1 10.2191 -0.0124 -5.6287 19 1 10.1086 0.4909 -7.9981 20 1 9.8479 -1.7948 -7.2310 21 6 5.3185 1.0247 -4.0527 22 6 2.0849 -0.0850 -2.3943 23 6 1.9985 -0.8415 -1.0929 24 1 -0.3634 0.4513 -0.9232 25 1 -0.3633 -1.0253 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.8170 1.8285 0.9776 28 1 1.4669 1.9612 -0.7544 29 1 3.9505 0.5138 0.0183 30 1 3.9213 2.2809 0.2458 31 1 4.6987 1.9794 -1.9959 32 1 2.9845 2.4058 -2.1673 33 1 3.8552 -1.5685 -3.9379 34 1 2.8235 -0.8413 -5.2019 35 1 4.5801 -0.8867 -6.6674 36 1 5.6112 -1.6172 -5.4049 37 1 5.9868 -0.2366 -7.7284 38 1 5.9263 0.5148 -3.3054 39 1 5.4252 2.1057 -3.9632 40 1 1.3646 0.7331 -2.3931 41 1 1.8769 -0.7582 -3.2260 42 1 2.9936 -1.1928 -0.8200 43 1 1.3432 -1.7023 -1.2272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260279979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:33 Heat of formation + Delta-G solvation = 0.990403 kcal Electronic energy + Delta-G solvation = -19759.170294 eV Core-core repulsion = 17031.598937 eV Total energy + Delta-G solvation = -2727.571357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90900 -37.44456 -35.04055 -32.75829 -31.91315 -29.31409 -28.18477 -26.62079 -25.39819 -24.49548 -23.51643 -21.06865 -19.96470 -19.40619 -18.90132 -17.04953 -16.21309 -15.90292 -15.27761 -15.00688 -14.64456 -14.22699 -13.71456 -13.37232 -13.21984 -12.78568 -12.56374 -12.49601 -12.29225 -11.92277 -11.71046 -11.39654 -11.25502 -11.06378 -10.82881 -10.75214 -10.59499 -10.24054 -10.11379 -10.07254 -9.98701 -9.69290 -9.26962 -8.44116 -8.35308 -8.27381 -7.88416 -6.27301 -3.98679 3.47065 3.50469 3.64137 3.80445 4.10098 4.57882 4.80002 4.89650 4.95078 5.18705 5.24335 5.31433 5.35472 5.42059 5.43285 5.51431 5.54137 5.66489 5.69259 5.72201 5.75293 5.84496 5.91897 6.00267 6.16421 6.27099 6.27349 6.43176 6.47189 6.62228 6.70980 6.86813 6.95624 7.01539 7.02495 7.14183 7.40575 7.48867 7.68276 7.77090 8.33052 8.51941 8.96402 9.73253 11.11035 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044519 B = 0.004675 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.795637 B = 5988.502853 C = 6292.069380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.061 3.939 4 C -0.122 4.122 5 C 0.069 3.931 6 N -0.542 5.542 7 C 0.082 3.918 8 H 0.033 0.967 9 C -0.113 4.113 10 C -0.110 4.110 11 C 0.033 3.967 12 H 0.017 0.983 13 C -0.590 4.590 14 H 0.049 0.951 15 C 0.018 3.982 16 N -0.917 5.917 17 Si 1.071 2.929 18 H -0.290 1.290 19 H -0.289 1.289 20 H -0.288 1.288 21 C -0.097 4.097 22 C 0.033 3.967 23 C 0.059 3.941 24 H 0.021 0.979 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.272 0.728 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 1.709 13.568 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.160 4.160 5 C -0.060 4.060 6 N -0.266 5.266 7 C -0.025 4.025 8 H 0.051 0.949 9 C -0.151 4.151 10 C -0.149 4.149 11 C 0.014 3.986 12 H 0.035 0.965 13 C -0.628 4.628 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.554 5.554 17 Si 0.900 3.100 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.069 4.069 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.986 0.714 13.160 16.535 hybrid contribution -2.169 1.518 -0.111 2.650 sum -12.155 2.232 13.049 17.973 Atomic orbital electron populations 1.22347 0.87866 1.01914 1.00004 1.62129 1.06992 1.12867 1.45767 1.21860 0.95787 0.88561 1.00395 1.21599 0.95266 1.03388 0.95769 1.21094 1.01516 0.90205 0.93200 1.59177 1.23354 1.31793 1.12278 1.22587 0.97649 0.96990 0.85281 0.94917 1.22272 0.98581 0.96210 0.98062 1.22362 0.94908 1.01386 0.96238 1.19577 0.96030 0.91966 0.91016 0.96509 1.22033 0.91527 1.48579 1.00707 0.93268 1.25757 1.06543 0.93877 0.92418 1.70732 1.06849 1.45770 1.32036 0.83519 0.74552 0.76699 0.75226 1.21584 1.21512 1.21443 1.22530 0.92206 0.98411 1.00381 1.22379 0.89026 0.98741 0.99433 1.22048 1.01883 0.94912 0.88063 0.96042 0.91436 0.91816 0.91333 0.95380 0.89701 0.90803 0.90082 0.97138 0.91743 0.93939 0.93648 0.92228 0.91628 0.91279 0.93855 0.95080 0.90108 0.89138 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.36 60.06 0.56 0.82 16 2 N -0.55 -6.39 4.99 -243.98 -1.22 -7.61 16 3 C 0.06 0.69 5.01 -4.31 -0.02 0.67 16 4 C -0.12 -1.46 5.68 -27.07 -0.15 -1.61 16 5 C 0.07 0.99 4.82 -6.55 -0.03 0.96 16 6 N -0.54 -8.39 3.85 -229.69 -0.88 -9.27 16 7 C 0.08 1.48 2.62 -66.05 -0.17 1.31 16 8 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 9 C -0.11 -2.12 4.99 -25.50 -0.13 -2.24 16 10 C -0.11 -2.55 5.39 -25.50 -0.14 -2.68 16 11 C 0.03 0.83 2.41 -90.11 -0.22 0.61 16 12 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 13 C -0.59 -16.58 8.38 -34.44 -0.29 -16.87 16 14 H 0.05 1.39 7.77 -52.49 -0.41 0.98 16 15 C 0.02 0.51 5.34 -17.82 -0.10 0.42 16 16 N -0.92 -27.59 13.44 55.43 0.74 -26.85 16 17 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 C -0.10 -2.04 4.41 -24.74 -0.11 -2.15 16 22 C 0.03 0.44 5.09 -4.51 -0.02 0.42 16 23 C 0.06 0.71 5.25 -4.47 -0.02 0.69 16 24 H 0.02 0.21 7.73 -51.93 -0.40 -0.19 16 25 H 0.07 0.58 7.96 -51.93 -0.41 0.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.33 6.40 -51.93 -0.33 0.00 16 29 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 30 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.08 1.23 6.33 -51.93 -0.33 0.91 16 32 H 0.01 0.15 7.60 -51.93 -0.39 -0.24 16 33 H 0.06 1.17 7.90 -51.92 -0.41 0.76 16 34 H 0.04 0.73 7.96 -51.93 -0.41 0.31 16 35 H 0.04 1.08 6.91 -51.93 -0.36 0.72 16 36 H 0.06 1.49 7.83 -51.93 -0.41 1.08 16 37 H 0.27 8.08 5.54 -40.82 -0.23 7.86 16 38 H 0.07 1.51 8.05 -51.93 -0.42 1.09 16 39 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 40 H 0.03 0.43 6.29 -51.93 -0.33 0.10 16 41 H 0.08 1.10 6.38 -51.92 -0.33 0.77 16 42 H 0.09 1.23 7.20 -51.93 -0.37 0.86 16 43 H 0.07 0.75 7.74 -51.93 -0.40 0.35 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -29.30 313.34 -10.18 -39.48 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.62 Total: -1.17 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -0.84 Total: -19.67 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -1.36 Total: -43.73 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.30 -10.18 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260279979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.467 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds