Wall clock time and date at job start Mon Mar 30 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48073 * 111.00067 * 2 1 4 4 C 1.50742 * 112.93545 * 192.21930 * 3 2 1 5 5 C 1.54515 * 108.94299 * 92.65624 * 4 3 2 6 6 N 1.40087 * 111.50526 * 283.98584 * 5 4 3 7 7 C 1.46906 * 110.99679 * 188.14945 * 6 5 4 8 8 H 1.09005 * 110.43371 * 294.93037 * 7 6 5 9 9 C 1.54265 * 110.59871 * 172.31872 * 7 6 5 10 10 C 1.54092 * 106.62126 * 217.54626 * 9 7 6 11 11 C 1.54270 * 106.49051 * 0.17041 * 10 9 7 12 12 H 1.09004 * 110.48170 * 264.70895 * 11 10 9 13 13 C 1.50700 * 110.48561 * 142.20156 * 11 10 9 14 14 H 1.07998 * 119.99349 * 243.23570 * 13 11 10 15 15 C 1.37871 * 120.00413 * 63.23903 * 13 11 10 16 16 N 1.31518 * 119.99758 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00171 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47314 * 239.99963 * 17 15 13 20 20 H 1.48500 * 109.47107 * 119.99950 * 17 15 13 21 21 C 1.54889 * 110.48630 * 57.47158 * 7 6 5 22 22 C 1.47687 * 114.56944 * 61.45460 * 6 5 4 23 23 C 1.47752 * 111.00104 * 232.40420 * 2 1 3 24 24 H 1.08997 * 109.47452 * 63.94938 * 1 2 3 25 25 H 1.09002 * 109.46831 * 183.94852 * 1 2 3 26 26 H 1.08999 * 109.47046 * 303.95183 * 1 2 3 27 27 H 1.08999 * 108.78751 * 71.32736 * 3 2 1 28 28 H 1.08994 * 108.69950 * 313.05164 * 3 2 1 29 29 H 1.08999 * 109.56467 * 332.81332 * 4 3 2 30 30 H 1.09008 * 109.55526 * 212.48867 * 4 3 2 31 31 H 1.08994 * 109.07555 * 163.46679 * 5 4 3 32 32 H 1.08996 * 109.07335 * 44.50568 * 5 4 3 33 33 H 1.09009 * 110.02879 * 336.93616 * 9 7 6 34 34 H 1.08992 * 110.03811 * 98.36608 * 9 7 6 35 35 H 1.08992 * 110.15706 * 240.87848 * 10 9 7 36 36 H 1.08994 * 110.00612 * 119.37686 * 10 9 7 37 37 H 0.97004 * 119.99768 * 0.02562 * 16 15 13 38 38 H 1.08992 * 110.75326 * 38.44147 * 21 7 6 39 39 H 1.08992 * 110.91249 * 275.13943 * 21 7 6 40 40 H 1.08997 * 109.74209 * 38.33426 * 22 6 5 41 41 H 1.09007 * 109.73368 * 159.03627 * 22 6 5 42 42 H 1.08997 * 108.99598 * 205.57000 * 23 2 1 43 43 H 1.09005 * 108.98930 * 324.39626 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3824 0.0000 4 6 3.4768 1.4445 -0.2938 5 6 3.6782 1.6434 -1.8128 6 7 3.4535 0.4555 -2.5205 7 6 3.8328 0.6039 -3.9320 8 1 3.1887 1.3324 -4.4246 9 6 3.7642 -0.7554 -4.6582 10 6 4.9466 -0.7876 -5.6458 11 6 5.6926 0.5525 -5.4796 12 1 5.3510 1.2738 -6.2220 13 6 7.1810 0.3452 -5.5934 14 1 7.8215 0.5558 -4.7498 15 6 7.7249 -0.1132 -6.7745 16 7 6.9448 -0.3700 -7.8017 17 14 9.5697 -0.3707 -6.9152 18 1 10.2191 -0.0124 -5.6287 19 1 10.1086 0.4909 -7.9981 20 1 9.8479 -1.7948 -7.2310 21 6 5.3185 1.0247 -4.0527 22 6 2.0849 -0.0850 -2.3943 23 6 1.9985 -0.8415 -1.0929 24 1 -0.3634 0.4513 -0.9232 25 1 -0.3633 -1.0253 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.8170 1.8285 0.9776 28 1 1.4669 1.9612 -0.7544 29 1 3.9505 0.5138 0.0183 30 1 3.9213 2.2809 0.2458 31 1 4.6987 1.9794 -1.9959 32 1 2.9845 2.4058 -2.1673 33 1 3.8552 -1.5685 -3.9379 34 1 2.8235 -0.8413 -5.2019 35 1 4.5801 -0.8867 -6.6674 36 1 5.6112 -1.6172 -5.4049 37 1 5.9868 -0.2366 -7.7284 38 1 5.9263 0.5148 -3.3054 39 1 5.4252 2.1057 -3.9632 40 1 1.3646 0.7331 -2.3931 41 1 1.8769 -0.7582 -3.2260 42 1 2.9936 -1.1928 -0.8200 43 1 1.3432 -1.7023 -1.2272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260279979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:32 Heat of formation + Delta-G solvation = -17.451523 kcal Electronic energy + Delta-G solvation = -19759.969996 eV Core-core repulsion = 17031.598937 eV Total energy + Delta-G solvation = -2728.371059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10334 -38.87950 -36.44295 -34.38186 -33.28666 -30.49362 -29.92159 -28.00883 -26.77509 -25.47707 -25.39307 -22.26806 -21.31033 -20.88931 -20.40855 -18.96385 -17.51606 -16.92690 -16.75272 -16.21061 -15.82440 -15.62395 -15.49109 -14.93352 -14.34648 -14.21169 -13.86836 -13.78255 -13.45952 -13.36383 -12.84852 -12.68364 -12.52377 -12.49843 -12.42476 -12.16348 -11.93057 -11.80856 -11.75083 -11.61269 -11.58564 -11.31036 -11.15415 -10.51592 -10.43830 -9.40828 -9.00433 -8.56042 -6.28266 1.53243 1.62105 1.78519 2.58612 2.84384 2.97364 3.22611 3.67944 3.86672 3.88790 3.95106 4.06107 4.13648 4.24446 4.29772 4.44243 4.48829 4.52685 4.58334 4.66281 4.68843 4.72985 4.78886 4.82080 4.86735 4.93567 4.98147 5.00314 5.03923 5.12211 5.20132 5.23173 5.31519 5.38501 5.49015 5.70760 6.04732 6.13733 6.16147 6.21399 6.27057 6.49835 6.70924 7.51684 8.82866 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044519 B = 0.004675 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.795637 B = 5988.502853 C = 6292.069380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.561 5.561 3 C 0.063 3.937 4 C -0.113 4.113 5 C 0.067 3.933 6 N -0.545 5.545 7 C 0.095 3.905 8 H 0.033 0.967 9 C -0.100 4.100 10 C -0.101 4.101 11 C 0.021 3.979 12 H -0.009 1.009 13 C -0.605 4.605 14 H 0.042 0.958 15 C -0.031 4.031 16 N -0.941 5.941 17 Si 1.116 2.884 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.085 4.085 22 C 0.037 3.963 23 C 0.064 3.936 24 H 0.019 0.981 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.010 0.990 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.032 0.968 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 1.642 15.275 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.065 4.065 4 C -0.151 4.151 5 C -0.062 4.062 6 N -0.269 5.269 7 C -0.013 4.013 8 H 0.051 0.949 9 C -0.138 4.138 10 C -0.140 4.140 11 C 0.002 3.998 12 H 0.009 0.991 13 C -0.643 4.643 14 H 0.061 0.939 15 C -0.230 4.230 16 N -0.579 5.579 17 Si 0.939 3.061 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.123 4.123 22 C -0.091 4.091 23 C -0.064 4.064 24 H 0.037 0.963 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.894 0.655 14.892 18.463 hybrid contribution -1.921 1.578 -0.618 2.562 sum -12.816 2.233 14.274 19.312 Atomic orbital electron populations 1.22408 0.86466 1.02831 1.00391 1.62154 1.08289 1.12868 1.45242 1.21863 0.94957 0.88541 1.01091 1.21536 0.96056 1.03599 0.93878 1.21142 1.00647 0.89664 0.94770 1.59166 1.24979 1.32479 1.10315 1.22308 0.95486 0.96272 0.87196 0.94933 1.22141 0.97395 0.96986 0.97292 1.22142 0.95993 0.99167 0.96717 1.19609 0.94853 0.92537 0.92839 0.99112 1.22398 0.93266 1.48090 1.00533 0.93932 1.27160 1.10373 0.93237 0.92187 1.70844 1.06581 1.47555 1.32897 0.82937 0.69906 0.77130 0.76146 1.19867 1.20659 1.20604 1.22324 0.94299 0.98412 0.97286 1.22420 0.87559 0.98758 1.00355 1.21953 1.01603 0.95367 0.87439 0.96264 0.90435 0.90672 0.89737 0.95902 0.90800 0.88936 0.91494 0.97155 0.90769 0.91743 0.95152 0.94746 0.92709 0.92296 0.93495 0.94941 0.90001 0.90659 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.36 127.69 1.20 1.63 16 2 N -0.56 -11.46 4.99 -925.81 -4.62 -16.09 16 3 C 0.06 1.25 5.01 85.34 0.43 1.67 16 4 C -0.11 -2.46 5.68 30.38 0.17 -2.29 16 5 C 0.07 1.82 4.82 88.05 0.42 2.25 16 6 N -0.55 -16.11 3.85 -880.60 -3.39 -19.50 16 7 C 0.10 3.36 2.62 45.99 0.12 3.48 16 8 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 9 C -0.10 -3.66 4.99 31.39 0.16 -3.50 16 10 C -0.10 -4.79 5.39 31.39 0.17 -4.62 16 11 C 0.02 1.05 2.41 -10.46 -0.03 1.03 16 12 H -0.01 -0.52 8.00 -2.38 -0.02 -0.54 16 13 C -0.60 -34.74 8.38 25.60 0.21 -34.53 16 14 H 0.04 2.44 7.77 -2.91 -0.02 2.42 16 15 C -0.03 -1.83 5.34 84.65 0.45 -1.37 16 16 N -0.94 -57.91 13.44 21.45 0.29 -57.62 16 17 Si 1.12 51.33 29.90 68.60 2.05 53.38 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 C -0.09 -3.60 4.41 31.89 0.14 -3.46 16 22 C 0.04 0.92 5.09 85.43 0.43 1.35 16 23 C 0.06 1.42 5.25 85.42 0.45 1.87 16 24 H 0.02 0.32 7.73 -2.39 -0.02 0.30 16 25 H 0.08 1.09 7.96 -2.39 -0.02 1.07 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.02 0.49 6.40 -2.39 -0.02 0.47 16 29 H 0.07 1.81 7.19 -2.39 -0.02 1.80 16 30 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.07 1.99 6.33 -2.39 -0.02 1.98 16 32 H 0.01 0.29 7.60 -2.39 -0.02 0.27 16 33 H 0.07 2.58 7.90 -2.38 -0.02 2.56 16 34 H 0.06 2.09 7.96 -2.39 -0.02 2.07 16 35 H 0.03 1.48 6.91 -2.39 -0.02 1.47 16 36 H 0.03 1.75 7.83 -2.39 -0.02 1.74 16 37 H 0.26 16.16 5.54 -92.71 -0.51 15.65 16 38 H 0.06 2.59 8.05 -2.39 -0.02 2.58 16 39 H 0.05 1.91 7.74 -2.39 -0.02 1.89 16 40 H 0.03 0.81 6.29 -2.39 -0.02 0.80 16 41 H 0.08 2.02 6.38 -2.38 -0.02 2.00 16 42 H 0.08 1.92 7.20 -2.39 -0.02 1.90 16 43 H 0.08 1.60 7.74 -2.38 -0.02 1.58 16 Total: -1.00 -63.56 313.34 -0.14 -63.69 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.21 Total: 12.63 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 4.33 Total: -36.50 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -7.73 Total: -93.20 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -63.56 -0.14 -63.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260279979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.239 kcal (2) G-P(sol) polarization free energy of solvation -63.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds