Wall clock time and date at job start Mon Mar 30 2020 04:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48073 * 111.00108 * 2 1 4 4 C 1.50745 * 112.93524 * 84.34930 * 3 2 1 5 5 C 1.54514 * 108.94168 * 92.65534 * 4 3 2 6 6 N 1.40089 * 111.50749 * 283.98808 * 5 4 3 7 7 C 1.46897 * 110.99845 * 188.14993 * 6 5 4 8 8 H 1.08998 * 110.01838 * 293.01078 * 7 6 5 9 9 C 1.54264 * 110.07445 * 54.43044 * 7 6 5 10 10 C 1.55028 * 104.28267 * 142.82227 * 9 7 6 11 11 C 1.54892 * 102.68619 * 322.23406 * 10 9 7 12 12 H 1.08998 * 110.48745 * 279.02974 * 11 10 9 13 13 C 1.50699 * 110.48926 * 156.51344 * 11 10 9 14 14 H 1.07998 * 119.99938 * 243.52407 * 13 11 10 15 15 C 1.37872 * 119.99889 * 63.24366 * 13 11 10 16 16 N 1.31518 * 120.00234 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00150 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47321 * 60.00175 * 17 15 13 19 19 H 1.48505 * 109.47637 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47340 * 300.00056 * 17 15 13 21 21 C 1.53881 * 110.03331 * 171.61998 * 7 6 5 22 22 C 1.47683 * 114.57081 * 61.45017 * 6 5 4 23 23 C 1.47747 * 111.00374 * 127.59996 * 2 1 3 24 24 H 1.08996 * 109.47444 * 56.04439 * 1 2 3 25 25 H 1.09003 * 109.47437 * 176.04991 * 1 2 3 26 26 H 1.09005 * 109.47504 * 296.04360 * 1 2 3 27 27 H 1.09002 * 108.78737 * 323.46510 * 3 2 1 28 28 H 1.09000 * 108.79365 * 205.24356 * 3 2 1 29 29 H 1.09003 * 109.56159 * 332.81626 * 4 3 2 30 30 H 1.09001 * 109.64692 * 212.54402 * 4 3 2 31 31 H 1.08996 * 109.07211 * 163.46932 * 5 4 3 32 32 H 1.08993 * 109.02171 * 44.47068 * 5 4 3 33 33 H 1.08998 * 110.48921 * 261.59590 * 9 7 6 34 34 H 1.09008 * 110.48921 * 24.10800 * 9 7 6 35 35 H 1.09005 * 110.87996 * 203.89605 * 10 9 7 36 36 H 1.09008 * 110.69911 * 80.48659 * 10 9 7 37 37 H 0.96993 * 120.00469 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.02900 * 121.37979 * 21 7 6 39 39 H 1.09005 * 110.02877 * 359.95170 * 21 7 6 40 40 H 1.08999 * 109.73846 * 38.34188 * 22 6 5 41 41 H 1.09001 * 109.73883 * 159.03699 * 22 6 5 42 42 H 1.09004 * 108.99337 * 313.43868 * 23 2 1 43 43 H 1.09003 * 108.98909 * 72.26139 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9996 1.3824 0.0000 4 6 2.0825 1.9798 1.3815 5 6 3.4912 1.7152 1.9587 6 7 3.6319 0.3870 2.3814 7 6 4.8981 0.1949 3.1008 8 1 5.7381 0.3196 2.4176 9 6 5.0063 1.2054 4.2614 10 6 5.6957 0.4091 5.3989 11 6 5.0678 -0.9996 5.2569 12 1 4.0869 -1.0297 5.7314 13 6 5.9742 -2.0440 5.8557 14 1 6.4046 -2.8098 5.2274 15 6 6.2588 -2.0184 7.2045 16 7 5.7395 -1.0823 7.9685 17 14 7.3830 -3.3125 7.9466 18 1 8.7165 -3.2409 7.2974 19 1 7.5276 -3.0659 9.4039 20 1 6.7981 -4.6600 7.7289 21 6 4.9372 -1.2072 3.7338 22 6 3.4735 -0.6181 1.3110 23 6 1.9985 -0.8416 1.0928 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 -0.3634 0.4512 0.9233 27 1 1.3513 2.0073 -0.6143 28 1 2.9968 1.3757 -0.4401 29 1 1.3324 1.5188 2.0241 30 1 1.9062 3.0541 1.3275 31 1 3.6588 2.3785 2.8071 32 1 4.2351 1.9250 1.1903 33 1 5.6170 2.0593 3.9681 34 1 4.0154 1.5356 4.5734 35 1 5.4613 0.8403 6.3722 36 1 6.7738 0.3691 5.2425 37 1 5.9393 -1.0645 8.9174 38 1 5.7962 -1.7628 3.3577 39 1 4.0162 -1.7447 3.5078 40 1 3.9303 -0.2519 0.3916 41 1 3.9470 -1.5530 1.6109 42 1 1.4640 -0.6057 2.0131 43 1 1.8324 -1.8901 0.8453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260280001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:36 Heat of formation + Delta-G solvation = 6.845383 kcal Electronic energy + Delta-G solvation = -19762.581279 eV Core-core repulsion = 17035.263813 eV Total energy + Delta-G solvation = -2727.317466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82649 -37.29791 -34.77873 -32.41722 -31.99268 -29.36555 -27.98297 -27.02045 -25.13070 -24.54663 -23.42870 -21.01659 -19.87810 -19.20027 -18.61303 -16.66324 -16.31967 -15.86903 -15.04754 -14.82318 -14.54437 -14.41187 -13.66668 -13.27166 -13.05283 -12.73972 -12.33783 -12.22654 -12.14842 -11.90590 -11.64766 -11.51891 -11.07473 -10.95772 -10.83291 -10.73715 -10.56032 -10.39289 -10.12426 -9.91626 -9.78243 -9.48089 -9.08429 -8.70613 -8.29793 -8.22077 -7.81565 -5.94395 -3.96917 3.35162 3.39834 3.42381 3.90378 4.22053 4.48813 4.81686 4.95825 5.08181 5.27048 5.37279 5.39043 5.45854 5.46802 5.55015 5.62741 5.68085 5.73640 5.78513 5.80926 5.88638 5.97954 6.03795 6.11085 6.21114 6.31812 6.38629 6.60301 6.62375 6.76519 6.91600 7.04800 7.06463 7.12748 7.25690 7.40116 7.64313 7.77058 7.82948 7.96494 8.12838 8.53331 9.05914 9.66597 11.14895 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.040165 B = 0.004800 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.953392 B = 5831.570874 C = 6165.464774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.554 5.554 3 C 0.056 3.944 4 C -0.149 4.149 5 C 0.073 3.927 6 N -0.549 5.549 7 C 0.089 3.911 8 H 0.029 0.971 9 C -0.122 4.122 10 C -0.098 4.098 11 C 0.053 3.947 12 H 0.030 0.970 13 C -0.513 4.513 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.109 4.109 22 C 0.058 3.942 23 C 0.061 3.939 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.013 0.987 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.259 0.741 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 5.329 -13.945 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.279 5.279 3 C -0.071 4.071 4 C -0.189 4.189 5 C -0.056 4.056 6 N -0.274 5.274 7 C -0.018 4.018 8 H 0.047 0.953 9 C -0.160 4.160 10 C -0.136 4.136 11 C 0.035 3.965 12 H 0.048 0.952 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.147 4.147 22 C -0.069 4.069 23 C -0.067 4.067 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.613 5.112 -13.881 16.637 hybrid contribution 0.978 -0.086 0.663 1.184 sum -6.635 5.026 -13.218 15.621 Atomic orbital electron populations 1.22323 0.87766 1.01852 1.00095 1.62235 1.07267 1.11789 1.46560 1.21957 1.00792 0.88220 0.96160 1.22062 0.98403 1.00736 0.97686 1.21019 0.94945 0.90885 0.98779 1.59205 1.36524 1.03473 1.28180 1.22359 0.87162 0.98297 0.94008 0.95290 1.22617 1.00370 0.96526 0.96524 1.22427 0.97994 0.97326 0.95878 1.19368 0.96224 0.92438 0.88515 0.95208 1.21199 1.28562 1.12260 0.93136 0.92882 1.24967 0.96042 0.95608 0.97276 1.69952 1.44353 1.33155 1.05440 0.86739 0.81382 0.82294 0.78027 1.20389 1.21398 1.20360 1.22383 0.99763 0.93159 0.99406 1.21876 0.95656 0.96722 0.92633 1.21923 0.95588 0.96680 0.92460 0.91853 0.91645 0.95700 0.91783 0.91331 0.90971 0.91288 0.90583 0.96865 0.94022 0.91796 0.91364 0.93621 0.93135 0.93058 0.92740 0.93897 0.89362 0.92963 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.38 60.06 0.56 0.85 16 2 N -0.55 -6.66 4.99 -243.98 -1.22 -7.88 16 3 C 0.06 0.64 5.15 -4.31 -0.02 0.61 16 4 C -0.15 -1.78 5.64 -27.07 -0.15 -1.93 16 5 C 0.07 1.03 4.75 -6.55 -0.03 1.00 16 6 N -0.55 -8.71 3.80 -230.35 -0.88 -9.59 16 7 C 0.09 1.61 2.71 -66.59 -0.18 1.43 16 8 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 9 C -0.12 -2.34 5.00 -25.00 -0.12 -2.47 16 10 C -0.10 -2.29 5.69 -24.66 -0.14 -2.43 16 11 C 0.05 1.33 2.75 -90.11 -0.25 1.08 16 12 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 13 C -0.51 -14.17 8.48 -34.44 -0.29 -14.46 16 14 H 0.05 1.44 7.56 -52.49 -0.40 1.05 16 15 C 0.06 1.74 5.34 -17.82 -0.10 1.65 16 16 N -0.89 -25.78 12.14 55.43 0.67 -25.11 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.11 -2.27 5.12 -25.61 -0.13 -2.40 16 22 C 0.06 0.84 4.95 -4.51 -0.02 0.81 16 23 C 0.06 0.80 5.09 -4.48 -0.02 0.78 16 24 H 0.06 0.56 7.96 -51.93 -0.41 0.14 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.02 0.26 7.73 -51.93 -0.40 -0.15 16 27 H 0.06 0.63 7.74 -51.93 -0.40 0.23 16 28 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 29 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.10 6.08 -51.93 -0.32 0.79 16 32 H 0.01 0.19 7.59 -51.93 -0.39 -0.21 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.23 7.36 -51.92 -0.38 0.85 16 35 H 0.07 1.74 7.45 -51.93 -0.39 1.35 16 36 H 0.04 1.10 8.05 -51.92 -0.42 0.68 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 39 H 0.05 1.10 6.72 -51.93 -0.35 0.75 16 40 H 0.04 0.61 6.77 -51.93 -0.35 0.26 16 41 H 0.09 1.32 6.09 -51.93 -0.32 1.00 16 42 H 0.05 0.76 7.08 -51.93 -0.37 0.40 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -28.13 314.10 -10.26 -38.39 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.65 Total: -1.49 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.90 Total: -15.48 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -1.42 Total: -42.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.13 -10.26 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.238 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds