Wall clock time and date at job start Mon Mar 30 2020 04:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48093 * 111.00235 * 2 1 4 4 C 1.46138 * 112.20011 * 156.46837 * 3 2 1 5 5 C 1.54263 * 111.82685 * 60.90596 * 4 3 2 6 6 N 1.44314 * 108.61658 * 281.28488 * 5 4 3 7 7 C 1.46901 * 111.03875 * 219.92128 * 6 5 4 8 8 H 1.08997 * 110.01771 * 300.19900 * 7 6 5 9 9 C 1.54271 * 110.03211 * 178.76033 * 7 6 5 10 10 C 1.54889 * 104.19645 * 217.10659 * 9 7 6 11 11 C 1.54886 * 102.74637 * 37.94153 * 10 9 7 12 12 H 1.09011 * 110.48614 * 80.73792 * 11 10 9 13 13 C 1.50699 * 110.48702 * 203.37745 * 11 10 9 14 14 H 1.07997 * 120.00170 * 114.77728 * 13 11 10 15 15 C 1.37879 * 119.99829 * 294.78152 * 13 11 10 16 16 N 1.31511 * 119.99798 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 120.00184 * 359.97438 * 15 13 11 18 18 H 1.48496 * 109.46845 * 90.00412 * 17 15 13 19 19 H 1.48495 * 109.46969 * 210.00388 * 17 15 13 20 20 H 1.48498 * 109.46857 * 330.00321 * 17 15 13 21 21 C 1.53866 * 110.03152 * 61.59647 * 7 6 5 22 22 C 1.48203 * 114.19822 * 93.49605 * 6 5 4 23 23 C 1.44259 * 110.99808 * 237.36640 * 2 1 3 24 24 H 1.08997 * 109.47134 * 56.04092 * 1 2 3 25 25 H 1.08993 * 109.47367 * 176.04643 * 1 2 3 26 26 H 1.09001 * 109.46861 * 296.04858 * 1 2 3 27 27 H 1.09002 * 108.93725 * 35.76770 * 3 2 1 28 28 H 1.08999 * 108.94213 * 277.17438 * 3 2 1 29 29 H 1.09000 * 108.99553 * 181.48566 * 4 3 2 30 30 H 1.08997 * 108.99989 * 300.32065 * 4 3 2 31 31 H 1.08994 * 109.60512 * 41.11063 * 5 4 3 32 32 H 1.09000 * 109.60592 * 161.61404 * 5 4 3 33 33 H 1.09003 * 110.48314 * 335.79073 * 9 7 6 34 34 H 1.09006 * 110.48485 * 98.42561 * 9 7 6 35 35 H 1.08997 * 110.75476 * 279.62852 * 10 9 7 36 36 H 1.08995 * 110.90963 * 156.33141 * 10 9 7 37 37 H 0.97006 * 120.00419 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.03480 * 238.56525 * 21 7 6 39 39 H 1.09002 * 110.03527 * 359.97438 * 21 7 6 40 40 H 1.09000 * 108.81776 * 197.28191 * 22 6 5 41 41 H 1.08995 * 108.74246 * 78.91770 * 22 6 5 42 42 H 1.09005 * 108.86690 * 337.92609 * 23 2 1 43 43 H 1.08995 * 108.86992 * 96.34934 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3825 0.0000 4 6 3.3558 1.4534 0.5402 5 6 4.3486 0.6138 -0.2900 6 7 4.1936 -0.7744 0.0725 7 6 5.4967 -1.4484 0.1479 8 1 6.0002 -1.3961 -0.8174 9 6 5.3065 -2.9210 0.5667 10 6 6.5170 -3.2133 1.4876 11 6 6.6765 -1.8882 2.2735 12 1 5.9633 -1.8446 3.0967 13 6 8.0861 -1.7459 2.7871 14 1 8.7182 -0.9524 2.4169 15 6 8.5687 -2.6289 3.7296 16 7 9.7990 -2.5051 4.1775 17 14 7.4752 -4.0012 4.3705 18 1 7.6422 -5.2059 3.5185 19 1 7.8570 -4.3265 5.7681 20 1 6.0571 -3.5618 4.3342 21 6 6.3677 -0.7918 1.2331 22 6 3.2555 -1.5272 -0.7933 23 6 1.9860 -0.7263 -1.1342 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3634 -1.0251 -0.0708 26 1 -0.3633 0.4513 0.9233 27 1 1.3456 2.0126 0.6026 28 1 2.0064 1.7590 -1.0229 29 1 3.6838 2.4929 0.5404 30 1 3.3491 1.0836 1.5655 31 1 4.1374 0.7419 -1.3516 32 1 5.3679 0.9353 -0.0759 33 1 4.3720 -3.0442 1.1142 34 1 5.3262 -3.5718 -0.3075 35 1 7.4094 -3.4225 0.8978 36 1 6.3004 -4.0400 2.1642 37 1 10.1386 -3.1261 4.8409 38 1 7.2944 -0.4216 0.7947 39 1 5.8238 0.0273 1.7035 40 1 2.9655 -2.4454 -0.2825 41 1 3.7666 -1.7875 -1.7202 42 1 1.2199 -1.4149 -1.4907 43 1 2.2188 -0.0185 -1.9297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260280022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:39 Heat of formation + Delta-G solvation = 12.596798 kcal Electronic energy + Delta-G solvation = -19850.419053 eV Core-core repulsion = 17123.350987 eV Total energy + Delta-G solvation = -2727.068066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.57288 -37.55982 -34.77056 -32.85609 -32.05346 -29.35149 -28.54563 -26.80915 -25.59458 -24.55596 -23.06751 -20.70095 -20.44471 -19.32878 -18.53562 -16.87814 -16.34005 -15.90823 -15.10478 -14.91505 -14.72203 -13.99122 -13.73638 -13.38879 -13.13806 -12.94412 -12.84716 -12.53927 -12.26197 -12.23162 -11.46078 -11.41814 -11.17198 -10.94564 -10.84740 -10.70157 -10.58343 -10.22173 -10.20916 -9.94369 -9.72740 -9.54786 -9.26556 -8.86240 -8.43341 -8.33978 -7.70544 -5.97592 -3.95053 3.37128 3.45938 3.50834 3.78608 4.21827 4.52522 4.84891 4.93480 5.06295 5.09787 5.23902 5.31133 5.32162 5.39573 5.48117 5.54107 5.58218 5.61557 5.72562 5.77403 5.83157 5.87746 5.95723 6.07220 6.14995 6.23757 6.43102 6.50838 6.53972 6.54861 6.75457 6.82226 7.00230 7.02880 7.05724 7.10587 7.29728 7.62099 7.64884 7.77851 7.92363 8.64385 9.06804 9.66696 11.15947 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.005394 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.840355 B = 5189.458438 C = 5362.029085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.525 5.525 3 C 0.065 3.935 4 C -0.117 4.117 5 C 0.067 3.933 6 N -0.532 5.532 7 C 0.087 3.913 8 H 0.030 0.970 9 C -0.117 4.117 10 C -0.127 4.127 11 C 0.016 3.984 12 H 0.033 0.967 13 C -0.507 4.507 14 H 0.071 0.929 15 C 0.069 3.931 16 N -0.907 5.907 17 Si 0.880 3.120 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.262 1.262 21 C -0.097 4.097 22 C 0.072 3.928 23 C 0.057 3.943 24 H 0.019 0.981 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 4.814 -11.281 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.249 5.249 3 C -0.062 4.062 4 C -0.155 4.155 5 C -0.062 4.062 6 N -0.257 5.257 7 C -0.021 4.021 8 H 0.047 0.953 9 C -0.155 4.155 10 C -0.165 4.165 11 C -0.003 4.003 12 H 0.051 0.949 13 C -0.544 4.544 14 H 0.089 0.911 15 C -0.132 4.132 16 N -0.546 5.546 17 Si 0.709 3.291 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.187 1.187 21 C -0.135 4.135 22 C -0.056 4.056 23 C -0.072 4.072 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.112 4.515 -10.304 20.479 hybrid contribution -0.413 -0.468 -1.199 1.352 sum -17.525 4.047 -11.503 21.350 Atomic orbital electron populations 1.22452 0.87573 1.01581 1.00450 1.61431 1.06656 1.13975 1.42791 1.21080 0.97390 0.88642 0.99092 1.20637 0.93818 0.98803 1.02282 1.21744 0.99498 0.88859 0.96118 1.60591 1.10918 1.01161 1.53036 1.22408 0.87720 0.94470 0.97486 0.95255 1.22469 0.99975 0.94198 0.98815 1.22867 0.96033 0.99839 0.97771 1.19894 0.97139 0.89959 0.93292 0.94893 1.21134 0.96199 1.14628 1.22484 0.91063 1.24995 0.94719 0.97514 0.95935 1.69913 1.15609 1.37973 1.31064 0.86896 0.81951 0.82804 0.77462 1.20537 1.22308 1.18724 1.22180 0.96823 0.98892 0.95643 1.22383 0.91726 0.97099 0.94371 1.21948 0.96909 0.97223 0.91118 0.96254 0.91533 0.91397 0.91684 0.95518 0.91837 0.89821 0.95534 0.90743 0.91284 0.93536 0.91764 0.93721 0.92863 0.92512 0.92173 0.90691 0.95409 0.91456 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.28 60.07 0.56 0.81 16 2 N -0.52 -6.24 4.66 -247.56 -1.15 -7.39 16 3 C 0.06 0.72 5.01 -6.42 -0.03 0.69 16 4 C -0.12 -1.45 5.66 -29.33 -0.17 -1.62 16 5 C 0.07 0.92 4.80 -4.55 -0.02 0.90 16 6 N -0.53 -8.21 3.95 -224.89 -0.89 -9.10 16 7 C 0.09 1.51 2.60 -66.60 -0.17 1.34 16 8 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 9 C -0.12 -2.10 5.33 -25.07 -0.13 -2.23 16 10 C -0.13 -2.78 5.31 -24.74 -0.13 -2.91 16 11 C 0.02 0.39 2.28 -90.12 -0.21 0.18 16 12 H 0.03 0.83 7.06 -51.92 -0.37 0.47 16 13 C -0.51 -14.44 9.04 -34.44 -0.31 -14.76 16 14 H 0.07 2.19 7.79 -52.49 -0.41 1.78 16 15 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 16 N -0.91 -28.27 13.96 55.43 0.77 -27.49 16 17 Si 0.88 22.39 24.65 -169.99 -4.19 18.20 16 18 H -0.28 -6.92 7.10 56.52 0.40 -6.52 16 19 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.26 -6.47 6.47 56.52 0.37 -6.11 16 21 C -0.10 -1.99 5.04 -25.62 -0.13 -2.11 16 22 C 0.07 0.96 5.11 -2.62 -0.01 0.95 16 23 C 0.06 0.65 5.13 -4.75 -0.02 0.63 16 24 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 26 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 28 H 0.03 0.28 7.38 -51.93 -0.38 -0.10 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 31 H 0.03 0.34 6.96 -51.93 -0.36 -0.02 16 32 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 33 H 0.07 1.25 7.26 -51.93 -0.38 0.87 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.44 8.05 -51.93 -0.42 1.02 16 36 H 0.04 1.00 5.27 -51.93 -0.27 0.72 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 39 H 0.06 1.20 7.03 -51.93 -0.36 0.83 16 40 H 0.07 1.04 6.93 -51.93 -0.36 0.68 16 41 H 0.03 0.36 8.04 -51.93 -0.42 -0.06 16 42 H 0.07 0.66 7.42 -51.93 -0.39 0.27 16 43 H 0.03 0.36 6.54 -51.93 -0.34 0.02 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -30.54 310.51 -9.37 -39.91 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.70 Total: -2.61 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.88 Total: -16.20 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.27 Total: -43.98 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.19 Total: 18.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.54 -9.37 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.507 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds