Wall clock time and date at job start Mon Mar 30 2020 04:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48093 * 111.00235 * 2 1 4 4 C 1.46138 * 112.20011 * 156.46837 * 3 2 1 5 5 C 1.54263 * 111.82685 * 60.90596 * 4 3 2 6 6 N 1.44314 * 108.61658 * 281.28488 * 5 4 3 7 7 C 1.46901 * 111.03875 * 219.92128 * 6 5 4 8 8 H 1.08997 * 110.01771 * 300.19900 * 7 6 5 9 9 C 1.54271 * 110.03211 * 178.76033 * 7 6 5 10 10 C 1.54889 * 104.19645 * 217.10659 * 9 7 6 11 11 C 1.54886 * 102.74637 * 37.94153 * 10 9 7 12 12 H 1.09011 * 110.48614 * 80.73792 * 11 10 9 13 13 C 1.50699 * 110.48702 * 203.37745 * 11 10 9 14 14 H 1.07997 * 120.00170 * 114.77728 * 13 11 10 15 15 C 1.37879 * 119.99829 * 294.78152 * 13 11 10 16 16 N 1.31511 * 119.99798 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 120.00184 * 359.97438 * 15 13 11 18 18 H 1.48496 * 109.46845 * 90.00412 * 17 15 13 19 19 H 1.48495 * 109.46969 * 210.00388 * 17 15 13 20 20 H 1.48498 * 109.46857 * 330.00321 * 17 15 13 21 21 C 1.53866 * 110.03152 * 61.59647 * 7 6 5 22 22 C 1.48203 * 114.19822 * 93.49605 * 6 5 4 23 23 C 1.44259 * 110.99808 * 237.36640 * 2 1 3 24 24 H 1.08997 * 109.47134 * 56.04092 * 1 2 3 25 25 H 1.08993 * 109.47367 * 176.04643 * 1 2 3 26 26 H 1.09001 * 109.46861 * 296.04858 * 1 2 3 27 27 H 1.09002 * 108.93725 * 35.76770 * 3 2 1 28 28 H 1.08999 * 108.94213 * 277.17438 * 3 2 1 29 29 H 1.09000 * 108.99553 * 181.48566 * 4 3 2 30 30 H 1.08997 * 108.99989 * 300.32065 * 4 3 2 31 31 H 1.08994 * 109.60512 * 41.11063 * 5 4 3 32 32 H 1.09000 * 109.60592 * 161.61404 * 5 4 3 33 33 H 1.09003 * 110.48314 * 335.79073 * 9 7 6 34 34 H 1.09006 * 110.48485 * 98.42561 * 9 7 6 35 35 H 1.08997 * 110.75476 * 279.62852 * 10 9 7 36 36 H 1.08995 * 110.90963 * 156.33141 * 10 9 7 37 37 H 0.97006 * 120.00419 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.03480 * 238.56525 * 21 7 6 39 39 H 1.09002 * 110.03527 * 359.97438 * 21 7 6 40 40 H 1.09000 * 108.81776 * 197.28191 * 22 6 5 41 41 H 1.08995 * 108.74246 * 78.91770 * 22 6 5 42 42 H 1.09005 * 108.86690 * 337.92609 * 23 2 1 43 43 H 1.08995 * 108.86992 * 96.34934 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3825 0.0000 4 6 3.3558 1.4534 0.5402 5 6 4.3486 0.6138 -0.2900 6 7 4.1936 -0.7744 0.0725 7 6 5.4967 -1.4484 0.1479 8 1 6.0002 -1.3961 -0.8174 9 6 5.3065 -2.9210 0.5667 10 6 6.5170 -3.2133 1.4876 11 6 6.6765 -1.8882 2.2735 12 1 5.9633 -1.8446 3.0967 13 6 8.0861 -1.7459 2.7871 14 1 8.7182 -0.9524 2.4169 15 6 8.5687 -2.6289 3.7296 16 7 9.7990 -2.5051 4.1775 17 14 7.4752 -4.0012 4.3705 18 1 7.6422 -5.2059 3.5185 19 1 7.8570 -4.3265 5.7681 20 1 6.0571 -3.5618 4.3342 21 6 6.3677 -0.7918 1.2331 22 6 3.2555 -1.5272 -0.7933 23 6 1.9860 -0.7263 -1.1342 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3634 -1.0251 -0.0708 26 1 -0.3633 0.4513 0.9233 27 1 1.3456 2.0126 0.6026 28 1 2.0064 1.7590 -1.0229 29 1 3.6838 2.4929 0.5404 30 1 3.3491 1.0836 1.5655 31 1 4.1374 0.7419 -1.3516 32 1 5.3679 0.9353 -0.0759 33 1 4.3720 -3.0442 1.1142 34 1 5.3262 -3.5718 -0.3075 35 1 7.4094 -3.4225 0.8978 36 1 6.3004 -4.0400 2.1642 37 1 10.1386 -3.1261 4.8409 38 1 7.2944 -0.4216 0.7947 39 1 5.8238 0.0273 1.7035 40 1 2.9655 -2.4454 -0.2825 41 1 3.7666 -1.7875 -1.7202 42 1 1.2199 -1.4149 -1.4907 43 1 2.2188 -0.0185 -1.9297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260280022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:38 Heat of formation + Delta-G solvation = -8.373613 kcal Electronic energy + Delta-G solvation = -19851.328398 eV Core-core repulsion = 17123.350987 eV Total energy + Delta-G solvation = -2727.977411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69293 -38.86683 -36.13994 -34.34730 -33.65556 -30.58931 -30.18716 -28.15476 -26.87411 -25.46606 -24.85242 -21.82743 -21.52333 -20.86670 -20.04558 -18.96511 -17.56487 -16.88627 -16.65689 -16.11092 -15.88936 -15.43961 -15.00411 -14.70017 -14.57568 -14.30033 -14.07907 -14.03221 -13.67816 -13.14378 -13.07798 -12.69303 -12.49333 -12.31355 -12.19036 -12.06786 -11.80170 -11.66942 -11.46310 -11.44884 -11.38781 -11.27258 -11.18331 -10.95498 -10.65051 -9.16614 -8.86262 -8.26510 -6.28559 1.33738 1.37907 1.49453 2.37332 2.88977 3.09078 3.16412 3.85617 3.92919 4.03086 4.05831 4.18605 4.25797 4.34017 4.42547 4.48169 4.57232 4.63625 4.66285 4.76284 4.77746 4.80170 4.85715 4.90234 4.98361 5.00859 5.06453 5.07301 5.12658 5.15527 5.23566 5.31993 5.40605 5.51725 5.55076 5.70152 5.82041 6.22567 6.24141 6.36127 6.46045 6.57834 6.78108 7.36804 8.90662 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.005394 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.840355 B = 5189.458438 C = 5362.029085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.548 5.548 3 C 0.066 3.934 4 C -0.111 4.111 5 C 0.066 3.934 6 N -0.542 5.542 7 C 0.097 3.903 8 H 0.036 0.964 9 C -0.103 4.103 10 C -0.127 4.127 11 C 0.011 3.989 12 H 0.022 0.978 13 C -0.512 4.512 14 H 0.031 0.969 15 C 0.012 3.988 16 N -0.954 5.954 17 Si 0.943 3.057 18 H -0.264 1.264 19 H -0.295 1.295 20 H -0.249 1.249 21 C -0.090 4.090 22 C 0.070 3.930 23 C 0.061 3.939 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.041 0.959 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.085 0.915 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 4.128 -12.673 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.272 5.272 3 C -0.061 4.061 4 C -0.149 4.149 5 C -0.063 4.063 6 N -0.268 5.268 7 C -0.011 4.011 8 H 0.054 0.946 9 C -0.141 4.141 10 C -0.165 4.165 11 C -0.008 4.008 12 H 0.041 0.959 13 C -0.550 4.550 14 H 0.049 0.951 15 C -0.184 4.184 16 N -0.595 5.595 17 Si 0.768 3.232 18 H -0.189 1.189 19 H -0.222 1.222 20 H -0.173 1.173 21 C -0.128 4.128 22 C -0.058 4.058 23 C -0.068 4.068 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.053 3.840 -11.717 23.540 hybrid contribution 0.553 -0.147 -0.768 0.958 sum -19.499 3.694 -12.485 23.446 Atomic orbital electron populations 1.22459 0.86052 1.02249 1.01044 1.61387 1.08208 1.14330 1.43313 1.21049 0.96531 0.88803 0.99745 1.20592 0.94635 0.99239 1.00455 1.21776 0.99191 0.88206 0.97091 1.60550 1.09882 1.01858 1.54467 1.22161 0.88566 0.94036 0.96346 0.94621 1.22370 0.97971 0.94799 0.98962 1.22743 0.97589 0.98042 0.98100 1.19857 0.93795 0.93021 0.94133 0.95948 1.21440 0.98018 1.13227 1.22326 0.95107 1.25845 0.96010 1.00273 0.96283 1.70059 1.17722 1.39509 1.32234 0.85881 0.80512 0.79902 0.76867 1.18920 1.22205 1.17268 1.22032 0.96974 0.98012 0.95779 1.22473 0.92136 0.97032 0.94139 1.21905 0.96383 0.97498 0.91018 0.95069 0.90931 0.91282 0.90651 0.94478 0.90333 0.92438 0.94266 0.92165 0.90873 0.90757 0.92840 0.93899 0.92688 0.94069 0.92181 0.91124 0.94605 0.89654 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.28 127.69 1.18 1.64 16 2 N -0.55 -11.44 4.66 -937.14 -4.37 -15.81 16 3 C 0.07 1.28 5.01 83.96 0.42 1.70 16 4 C -0.11 -2.56 5.66 28.91 0.16 -2.40 16 5 C 0.07 1.71 4.80 87.21 0.42 2.12 16 6 N -0.54 -15.63 3.95 -865.43 -3.42 -19.05 16 7 C 0.10 3.23 2.60 45.64 0.12 3.35 16 8 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 9 C -0.10 -3.45 5.33 31.67 0.17 -3.28 16 10 C -0.13 -5.37 5.31 31.88 0.17 -5.20 16 11 C 0.01 0.53 2.28 -10.47 -0.02 0.50 16 12 H 0.02 1.13 7.06 -2.38 -0.02 1.11 16 13 C -0.51 -30.20 9.04 25.60 0.23 -29.97 16 14 H 0.03 2.00 7.79 -2.91 -0.02 1.98 16 15 C 0.01 0.73 5.46 84.66 0.46 1.20 16 16 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 17 Si 0.94 46.28 24.65 68.60 1.69 47.97 16 18 H -0.26 -12.26 7.10 99.48 0.71 -11.55 16 19 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 20 H -0.25 -11.56 6.47 99.48 0.64 -10.92 16 21 C -0.09 -3.69 5.04 31.32 0.16 -3.53 16 22 C 0.07 1.64 5.11 86.37 0.44 2.08 16 23 C 0.06 1.18 5.13 87.11 0.45 1.63 16 24 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.07 1.03 7.86 -2.39 -0.02 1.01 16 26 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 27 H 0.08 1.31 7.85 -2.39 -0.02 1.29 16 28 H 0.04 0.66 7.38 -2.39 -0.02 0.64 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 31 H 0.04 0.92 6.96 -2.39 -0.02 0.90 16 32 H 0.06 1.71 6.33 -2.39 -0.02 1.69 16 33 H 0.07 2.42 7.26 -2.39 -0.02 2.40 16 34 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.05 2.36 8.05 -2.39 -0.02 2.34 16 36 H 0.04 1.82 5.27 -2.39 -0.01 1.80 16 37 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 38 H 0.04 1.78 7.66 -2.39 -0.02 1.76 16 39 H 0.06 2.42 7.03 -2.39 -0.02 2.40 16 40 H 0.07 1.73 6.93 -2.39 -0.02 1.71 16 41 H 0.04 0.79 8.04 -2.39 -0.02 0.77 16 42 H 0.09 1.34 7.42 -2.38 -0.02 1.32 16 43 H 0.04 0.68 6.54 -2.39 -0.02 0.66 16 Total: -1.00 -66.90 310.51 -0.54 -67.45 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.89 Total: 10.60 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 4.36 Total: -30.15 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -7.49 Total: -95.87 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.69 Total: 47.97 kcal Total: -66.90 -0.54 -67.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.075 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds