Wall clock time and date at job start Mon Mar 30 2020 04:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48072 * 111.00199 * 2 1 4 4 C 1.50737 * 112.94156 * 192.22091 * 3 2 1 5 5 C 1.54514 * 108.94549 * 92.64522 * 4 3 2 6 6 N 1.40087 * 111.51178 * 283.99295 * 5 4 3 7 7 C 1.46897 * 110.99692 * 188.15098 * 6 5 4 8 8 H 1.09003 * 110.01412 * 301.38629 * 7 6 5 9 9 C 1.53872 * 110.07668 * 62.80943 * 7 6 5 10 10 C 1.54266 * 106.60044 * 119.30490 * 9 7 6 11 11 C 1.54893 * 104.19500 * 23.61099 * 10 9 7 12 12 H 1.09000 * 110.75571 * 80.37081 * 11 10 9 13 13 C 1.50697 * 110.75379 * 203.74545 * 11 10 9 14 14 H 1.07999 * 120.00325 * 113.32969 * 13 11 10 15 15 C 1.37880 * 119.99873 * 293.32564 * 13 11 10 16 16 N 1.31518 * 119.99845 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00048 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47129 * 89.99857 * 17 15 13 19 19 H 1.48506 * 109.47170 * 209.99872 * 17 15 13 20 20 H 1.48500 * 109.47128 * 329.99920 * 17 15 13 21 21 C 1.54266 * 110.03035 * 179.97438 * 7 6 5 22 22 C 1.47683 * 114.57172 * 61.44876 * 6 5 4 23 23 C 1.47748 * 111.00313 * 232.39996 * 2 1 3 24 24 H 1.08997 * 109.47348 * 63.95567 * 1 2 3 25 25 H 1.09010 * 109.46936 * 183.95448 * 1 2 3 26 26 H 1.09001 * 109.47158 * 303.94859 * 1 2 3 27 27 H 1.08999 * 108.78755 * 71.32475 * 3 2 1 28 28 H 1.09001 * 108.78640 * 313.11426 * 3 2 1 29 29 H 1.09006 * 109.55917 * 332.81109 * 4 3 2 30 30 H 1.09005 * 109.56152 * 212.48731 * 4 3 2 31 31 H 1.09005 * 109.06877 * 163.46716 * 5 4 3 32 32 H 1.08998 * 109.01472 * 44.48149 * 5 4 3 33 33 H 1.09002 * 110.03208 * 238.58717 * 9 7 6 34 34 H 1.08996 * 110.03362 * 0.02562 * 9 7 6 35 35 H 1.09002 * 110.48438 * 142.28717 * 10 9 7 36 36 H 1.09001 * 110.48592 * 264.92893 * 10 9 7 37 37 H 0.97002 * 119.99577 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.48620 * 335.73478 * 21 7 6 39 39 H 1.09004 * 110.48798 * 98.37312 * 21 7 6 40 40 H 1.09003 * 109.73944 * 38.33784 * 22 6 5 41 41 H 1.08995 * 109.73536 * 159.03635 * 22 6 5 42 42 H 1.09001 * 108.99350 * 205.56705 * 23 2 1 43 43 H 1.09002 * 108.99199 * 324.30895 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9996 1.3824 0.0000 4 6 3.4767 1.4446 -0.2938 5 6 3.6781 1.6433 -1.8129 6 7 3.4535 0.4554 -2.5205 7 6 3.8328 0.6037 -3.9319 8 1 3.2629 1.4130 -4.3883 9 6 5.3402 0.8907 -4.0463 10 6 5.9475 -0.2642 -4.8693 11 6 4.7546 -0.8138 -5.6903 12 1 4.5698 -0.1923 -6.5665 13 6 4.9969 -2.2461 -6.0910 14 1 4.3800 -3.0329 -5.6826 15 6 6.0061 -2.5522 -6.9792 16 7 6.7576 -1.5942 -7.4763 17 14 6.3061 -4.3277 -7.4764 18 1 5.4913 -4.6504 -8.6752 19 1 7.7451 -4.5175 -7.7903 20 1 5.9203 -5.2266 -6.3591 21 6 3.5773 -0.7157 -4.6892 22 6 2.0850 -0.0852 -2.3943 23 6 1.9985 -0.8416 -1.0928 24 1 -0.3634 0.4512 -0.9233 25 1 -0.3633 -1.0253 0.0709 26 1 -0.3633 0.5739 0.8525 27 1 1.8169 1.8285 0.9776 28 1 1.4670 1.9628 -0.7533 29 1 3.9505 0.5139 0.0183 30 1 3.9212 2.2810 0.2457 31 1 4.6988 1.9794 -1.9958 32 1 2.9836 2.4054 -2.1665 33 1 5.5019 1.8393 -4.5583 34 1 5.7912 0.9196 -3.0544 35 1 6.7275 0.1093 -5.5328 36 1 6.3440 -1.0357 -4.2092 37 1 7.4674 -1.8095 -8.1014 38 1 3.5912 -1.5600 -4.0000 39 1 2.6270 -0.6722 -5.2215 40 1 1.3646 0.7329 -2.3931 41 1 1.8770 -0.7584 -3.2258 42 1 2.9936 -1.1927 -0.8198 43 1 1.3441 -1.7031 -1.2260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260280042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:42 Heat of formation + Delta-G solvation = 7.082593 kcal Electronic energy + Delta-G solvation = -19797.013003 eV Core-core repulsion = 17069.705823 eV Total energy + Delta-G solvation = -2727.307180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85995 -37.27559 -34.77774 -32.55718 -31.95314 -29.32632 -27.95050 -27.05837 -25.04389 -24.73193 -23.43439 -21.02024 -19.88936 -18.92716 -18.91138 -16.82314 -16.03709 -15.69392 -15.30769 -14.79309 -14.62164 -14.38200 -13.99420 -13.16202 -12.99500 -12.71006 -12.45218 -12.25172 -12.20958 -11.77726 -11.59760 -11.37786 -11.16947 -10.94967 -10.85480 -10.70834 -10.62981 -10.41208 -10.17107 -9.89650 -9.84234 -9.45648 -9.05626 -8.73466 -8.31124 -8.30385 -7.77456 -5.95628 -3.97496 3.33954 3.40776 3.44326 3.88440 4.19587 4.49040 4.85326 4.95915 5.02464 5.28946 5.31918 5.36767 5.43648 5.45865 5.50840 5.58395 5.64538 5.74833 5.77532 5.83318 5.89176 5.96744 6.00248 6.01752 6.26835 6.34947 6.39561 6.54141 6.62775 6.82010 6.90379 7.03288 7.07037 7.11036 7.23988 7.39363 7.59107 7.77389 7.80572 7.96162 8.09151 8.52086 9.05004 9.66096 11.14294 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.005093 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.154487 B = 5496.266180 C = 6006.156949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.062 3.938 4 C -0.122 4.122 5 C 0.069 3.931 6 N -0.542 5.542 7 C 0.086 3.914 8 H 0.027 0.973 9 C -0.120 4.120 10 C -0.098 4.098 11 C 0.051 3.949 12 H 0.029 0.971 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.109 4.109 22 C 0.032 3.968 23 C 0.058 3.942 24 H 0.021 0.979 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.009 0.991 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.029 0.971 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 6.263 12.896 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.160 4.160 5 C -0.060 4.060 6 N -0.267 5.267 7 C -0.021 4.021 8 H 0.045 0.955 9 C -0.158 4.158 10 C -0.136 4.136 11 C 0.033 3.967 12 H 0.047 0.953 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.147 4.147 22 C -0.096 4.096 23 C -0.069 4.069 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.378 5.789 13.404 16.834 hybrid contribution -0.619 0.151 -1.444 1.578 sum -8.997 5.940 11.960 16.102 Atomic orbital electron populations 1.22343 0.87910 1.01936 0.99932 1.62135 1.06975 1.12716 1.45956 1.21837 0.95723 0.88715 1.00285 1.21595 0.95383 1.03278 0.95781 1.21099 1.01123 0.90488 0.93332 1.59190 1.23705 1.31330 1.12438 1.22380 0.96359 0.97984 0.85360 0.95546 1.22348 0.93987 0.99520 0.99981 1.22259 0.99824 0.94547 0.96960 1.19535 0.89024 0.96101 0.92083 0.95268 1.21119 1.15739 0.92426 1.25466 0.92735 1.24972 0.96069 0.96841 0.96037 1.69964 1.20242 1.31565 1.31231 0.86664 0.77267 0.85640 0.78833 1.20833 1.21329 1.19912 1.22577 0.99313 0.94762 0.98054 1.22403 0.88657 0.98814 0.99742 1.22053 1.01932 0.94909 0.88040 0.96014 0.91411 0.91924 0.91474 0.95416 0.89692 0.90985 0.90468 0.97268 0.93545 0.92389 0.91981 0.93293 0.93178 0.91406 0.94168 0.95265 0.89356 0.89124 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.36 60.06 0.56 0.84 16 2 N -0.55 -6.69 4.99 -243.98 -1.22 -7.91 16 3 C 0.06 0.71 5.00 -4.31 -0.02 0.69 16 4 C -0.12 -1.45 5.68 -27.07 -0.15 -1.60 16 5 C 0.07 0.96 4.77 -6.55 -0.03 0.93 16 6 N -0.54 -8.57 3.80 -230.35 -0.88 -9.44 16 7 C 0.09 1.57 2.71 -66.60 -0.18 1.39 16 8 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 9 C -0.12 -2.30 5.81 -25.61 -0.15 -2.45 16 10 C -0.10 -2.29 5.75 -25.07 -0.14 -2.43 16 11 C 0.05 1.28 2.73 -89.80 -0.25 1.04 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -14.03 8.49 -34.44 -0.29 -14.32 16 14 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 15 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 16 N -0.89 -25.82 12.41 55.43 0.69 -25.13 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.11 -2.26 4.22 -25.09 -0.11 -2.36 16 22 C 0.03 0.46 5.01 -4.51 -0.02 0.44 16 23 C 0.06 0.76 5.25 -4.47 -0.02 0.74 16 24 H 0.02 0.22 7.73 -51.93 -0.40 -0.18 16 25 H 0.07 0.63 7.97 -51.92 -0.41 0.21 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.34 6.41 -51.93 -0.33 0.00 16 29 H 0.08 1.12 7.19 -51.93 -0.37 0.75 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.09 6.09 -51.93 -0.32 0.77 16 32 H 0.01 0.13 7.59 -51.93 -0.39 -0.26 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.04 6.59 -51.93 -0.34 0.70 16 35 H 0.06 1.57 7.63 -51.93 -0.40 1.18 16 36 H 0.05 1.20 8.04 -51.93 -0.42 0.78 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.07 1.44 7.41 -51.93 -0.38 1.05 16 39 H 0.04 0.79 7.96 -51.93 -0.41 0.38 16 40 H 0.03 0.42 6.30 -51.93 -0.33 0.09 16 41 H 0.09 1.35 5.83 -51.93 -0.30 1.04 16 42 H 0.09 1.33 7.20 -51.93 -0.37 0.95 16 43 H 0.07 0.84 7.74 -51.93 -0.40 0.44 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -28.16 314.80 -10.26 -38.42 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.67 Total: -1.63 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -0.90 Total: -15.47 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -1.41 Total: -42.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.16 -10.26 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.498 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds