Wall clock time and date at job start Mon Mar 30 2020 04:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48072 * 111.00199 * 2 1 4 4 C 1.50737 * 112.94156 * 192.22091 * 3 2 1 5 5 C 1.54514 * 108.94549 * 92.64522 * 4 3 2 6 6 N 1.40087 * 111.51178 * 283.99295 * 5 4 3 7 7 C 1.46897 * 110.99692 * 188.15098 * 6 5 4 8 8 H 1.09003 * 110.01412 * 301.38629 * 7 6 5 9 9 C 1.53872 * 110.07668 * 62.80943 * 7 6 5 10 10 C 1.54266 * 106.60044 * 119.30490 * 9 7 6 11 11 C 1.54893 * 104.19500 * 23.61099 * 10 9 7 12 12 H 1.09000 * 110.75571 * 80.37081 * 11 10 9 13 13 C 1.50697 * 110.75379 * 203.74545 * 11 10 9 14 14 H 1.07999 * 120.00325 * 113.32969 * 13 11 10 15 15 C 1.37880 * 119.99873 * 293.32564 * 13 11 10 16 16 N 1.31518 * 119.99845 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00048 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47129 * 89.99857 * 17 15 13 19 19 H 1.48506 * 109.47170 * 209.99872 * 17 15 13 20 20 H 1.48500 * 109.47128 * 329.99920 * 17 15 13 21 21 C 1.54266 * 110.03035 * 179.97438 * 7 6 5 22 22 C 1.47683 * 114.57172 * 61.44876 * 6 5 4 23 23 C 1.47748 * 111.00313 * 232.39996 * 2 1 3 24 24 H 1.08997 * 109.47348 * 63.95567 * 1 2 3 25 25 H 1.09010 * 109.46936 * 183.95448 * 1 2 3 26 26 H 1.09001 * 109.47158 * 303.94859 * 1 2 3 27 27 H 1.08999 * 108.78755 * 71.32475 * 3 2 1 28 28 H 1.09001 * 108.78640 * 313.11426 * 3 2 1 29 29 H 1.09006 * 109.55917 * 332.81109 * 4 3 2 30 30 H 1.09005 * 109.56152 * 212.48731 * 4 3 2 31 31 H 1.09005 * 109.06877 * 163.46716 * 5 4 3 32 32 H 1.08998 * 109.01472 * 44.48149 * 5 4 3 33 33 H 1.09002 * 110.03208 * 238.58717 * 9 7 6 34 34 H 1.08996 * 110.03362 * 0.02562 * 9 7 6 35 35 H 1.09002 * 110.48438 * 142.28717 * 10 9 7 36 36 H 1.09001 * 110.48592 * 264.92893 * 10 9 7 37 37 H 0.97002 * 119.99577 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.48620 * 335.73478 * 21 7 6 39 39 H 1.09004 * 110.48798 * 98.37312 * 21 7 6 40 40 H 1.09003 * 109.73944 * 38.33784 * 22 6 5 41 41 H 1.08995 * 109.73536 * 159.03635 * 22 6 5 42 42 H 1.09001 * 108.99350 * 205.56705 * 23 2 1 43 43 H 1.09002 * 108.99199 * 324.30895 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9996 1.3824 0.0000 4 6 3.4767 1.4446 -0.2938 5 6 3.6781 1.6433 -1.8129 6 7 3.4535 0.4554 -2.5205 7 6 3.8328 0.6037 -3.9319 8 1 3.2629 1.4130 -4.3883 9 6 5.3402 0.8907 -4.0463 10 6 5.9475 -0.2642 -4.8693 11 6 4.7546 -0.8138 -5.6903 12 1 4.5698 -0.1923 -6.5665 13 6 4.9969 -2.2461 -6.0910 14 1 4.3800 -3.0329 -5.6826 15 6 6.0061 -2.5522 -6.9792 16 7 6.7576 -1.5942 -7.4763 17 14 6.3061 -4.3277 -7.4764 18 1 5.4913 -4.6504 -8.6752 19 1 7.7451 -4.5175 -7.7903 20 1 5.9203 -5.2266 -6.3591 21 6 3.5773 -0.7157 -4.6892 22 6 2.0850 -0.0852 -2.3943 23 6 1.9985 -0.8416 -1.0928 24 1 -0.3634 0.4512 -0.9233 25 1 -0.3633 -1.0253 0.0709 26 1 -0.3633 0.5739 0.8525 27 1 1.8169 1.8285 0.9776 28 1 1.4670 1.9628 -0.7533 29 1 3.9505 0.5139 0.0183 30 1 3.9212 2.2810 0.2457 31 1 4.6988 1.9794 -1.9958 32 1 2.9836 2.4054 -2.1665 33 1 5.5019 1.8393 -4.5583 34 1 5.7912 0.9196 -3.0544 35 1 6.7275 0.1093 -5.5328 36 1 6.3440 -1.0357 -4.2092 37 1 7.4674 -1.8095 -8.1014 38 1 3.5912 -1.5600 -4.0000 39 1 2.6270 -0.6722 -5.2215 40 1 1.3646 0.7329 -2.3931 41 1 1.8770 -0.7584 -3.2258 42 1 2.9936 -1.1927 -0.8198 43 1 1.3441 -1.7031 -1.2260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260280042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:41 Heat of formation + Delta-G solvation = -10.316431 kcal Electronic energy + Delta-G solvation = -19797.767481 eV Core-core repulsion = 17069.705823 eV Total energy + Delta-G solvation = -2728.061658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06691 -38.67043 -36.19054 -34.24470 -33.30662 -30.68852 -29.51693 -28.56765 -26.31984 -25.95753 -25.05047 -22.18203 -21.26232 -20.48273 -20.37915 -18.56501 -17.46621 -16.83065 -16.66525 -16.43841 -16.05694 -15.63657 -15.27901 -14.64444 -14.23507 -14.01423 -13.89947 -13.52387 -13.32103 -13.30913 -12.93912 -12.76878 -12.65627 -12.42800 -12.38668 -12.17784 -12.03706 -11.76198 -11.64491 -11.42964 -11.35433 -11.32154 -10.92755 -10.78532 -10.43073 -9.33829 -8.93628 -8.09972 -6.18861 1.41851 1.42814 1.53108 2.45208 2.92749 3.01501 3.21124 3.81718 3.94998 3.99771 4.01910 4.14941 4.27462 4.32209 4.34677 4.49318 4.57828 4.59154 4.70701 4.73988 4.79007 4.80769 4.86906 4.97188 4.98620 5.02436 5.08045 5.12329 5.18649 5.25185 5.32630 5.36228 5.42905 5.49754 5.67114 5.90337 6.01765 6.10520 6.18415 6.30390 6.41737 6.59833 6.91435 7.48233 8.99400 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.005093 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.154487 B = 5496.266180 C = 6006.156949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.062 3.938 4 C -0.114 4.114 5 C 0.066 3.934 6 N -0.547 5.547 7 C 0.097 3.903 8 H 0.031 0.969 9 C -0.108 4.108 10 C -0.089 4.089 11 C 0.040 3.960 12 H -0.002 1.002 13 C -0.528 4.528 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.922 5.922 17 Si 0.952 3.048 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.095 4.095 22 C 0.037 3.963 23 C 0.065 3.935 24 H 0.018 0.982 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.011 0.989 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.259 0.741 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 6.411 14.505 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.065 4.065 4 C -0.152 4.152 5 C -0.063 4.063 6 N -0.272 5.272 7 C -0.011 4.011 8 H 0.049 0.951 9 C -0.146 4.146 10 C -0.128 4.128 11 C 0.022 3.978 12 H 0.017 0.983 13 C -0.566 4.566 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.133 4.133 22 C -0.091 4.091 23 C -0.063 4.063 24 H 0.037 0.963 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.411 5.941 15.031 18.703 hybrid contribution -0.325 0.123 -1.942 1.973 sum -9.736 6.064 13.089 17.403 Atomic orbital electron populations 1.22402 0.86589 1.02714 1.00395 1.62163 1.08215 1.13011 1.45117 1.21879 0.95232 0.88353 1.01083 1.21550 0.95839 1.03574 0.94207 1.21188 1.01029 0.89575 0.94541 1.59177 1.24739 1.32507 1.10764 1.22125 0.95646 0.96409 0.86920 0.95100 1.22218 0.94473 0.97960 0.99976 1.22039 0.98650 0.95601 0.96491 1.19527 0.91618 0.94493 0.92211 0.98335 1.21487 1.15762 0.93688 1.25659 0.92966 1.25751 0.95882 1.00900 0.96116 1.70091 1.20719 1.33525 1.31778 0.85651 0.77162 0.80781 0.78652 1.20148 1.21018 1.19207 1.22363 0.97739 0.96115 0.97082 1.22387 0.87868 0.98714 1.00131 1.21920 1.01445 0.95298 0.87620 0.96301 0.90712 0.90507 0.89758 0.95872 0.91000 0.88653 0.90633 0.97075 0.92520 0.90851 0.94742 0.94960 0.93181 0.91982 0.93579 0.94910 0.90468 0.90735 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.36 127.69 1.20 1.67 16 2 N -0.56 -12.22 4.99 -925.82 -4.62 -16.84 16 3 C 0.06 1.24 5.00 85.34 0.43 1.67 16 4 C -0.11 -2.40 5.68 30.37 0.17 -2.23 16 5 C 0.07 1.69 4.77 88.05 0.42 2.11 16 6 N -0.55 -16.50 3.80 -882.68 -3.35 -19.86 16 7 C 0.10 3.43 2.71 45.64 0.12 3.55 16 8 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 9 C -0.11 -4.08 5.81 31.32 0.18 -3.89 16 10 C -0.09 -4.29 5.75 31.67 0.18 -4.11 16 11 C 0.04 2.06 2.73 -10.26 -0.03 2.04 16 12 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 13 C -0.53 -29.65 8.49 25.60 0.22 -29.44 16 14 H 0.05 2.88 7.77 -2.91 -0.02 2.86 16 15 C 0.01 0.67 5.36 84.65 0.45 1.13 16 16 N -0.92 -54.65 12.41 21.45 0.27 -54.38 16 17 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C -0.10 -3.94 4.22 31.66 0.13 -3.81 16 22 C 0.04 1.02 5.01 85.43 0.43 1.45 16 23 C 0.07 1.61 5.25 85.42 0.45 2.05 16 24 H 0.02 0.34 7.73 -2.39 -0.02 0.32 16 25 H 0.07 1.20 7.97 -2.38 -0.02 1.18 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.02 0.50 6.41 -2.39 -0.02 0.48 16 29 H 0.07 1.75 7.19 -2.38 -0.02 1.73 16 30 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.08 1.96 6.09 -2.38 -0.01 1.94 16 32 H 0.01 0.29 7.59 -2.39 -0.02 0.27 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 2.54 6.59 -2.39 -0.02 2.52 16 35 H 0.03 1.80 7.63 -2.39 -0.02 1.78 16 36 H 0.03 1.61 8.04 -2.39 -0.02 1.59 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.06 2.63 7.41 -2.39 -0.02 2.61 16 39 H 0.05 1.82 7.96 -2.38 -0.02 1.80 16 40 H 0.03 0.88 6.30 -2.39 -0.02 0.86 16 41 H 0.08 2.28 5.83 -2.39 -0.01 2.26 16 42 H 0.07 2.09 7.20 -2.39 -0.02 2.08 16 43 H 0.08 1.78 7.74 -2.39 -0.02 1.76 16 Total: -1.00 -60.67 314.80 -0.38 -61.05 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.95 Total: 11.47 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.36 Total: -27.81 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -7.71 Total: -91.08 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.67 -0.38 -61.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.729 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds