Wall clock time and date at job start Mon Mar 30 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00580 * 2 1 4 4 H 1.07993 * 120.00400 * 213.36263 * 3 2 1 5 5 C 1.38816 * 119.99580 * 33.36029 * 3 2 1 6 6 N 1.31621 * 119.99943 * 5.77204 * 5 3 2 7 7 Si 1.86803 * 119.99784 * 185.76914 * 5 3 2 8 8 H 1.48507 * 109.46624 * 90.00462 * 7 5 3 9 9 H 1.48503 * 109.46992 * 209.99793 * 7 5 3 10 10 H 1.48493 * 109.47339 * 330.00044 * 7 5 3 11 11 C 1.46503 * 119.99496 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47247 * 96.11385 * 11 2 1 13 13 H 1.09004 * 109.69433 * 57.99276 * 12 11 2 14 14 C 1.53989 * 109.69583 * 297.44616 * 12 11 2 15 15 C 1.45872 * 112.66402 * 158.90057 * 14 12 11 16 16 C 1.54522 * 111.67398 * 61.49837 * 15 14 12 17 17 C 1.50535 * 108.86038 * 282.75015 * 16 15 14 18 18 C 1.53923 * 112.93664 * 91.75500 * 17 16 15 19 19 N 1.44301 * 109.69722 * 178.54047 * 12 11 2 20 20 C 1.46904 * 110.99846 * 341.05511 * 19 12 11 21 21 C 1.53004 * 117.49964 * 250.65610 * 20 19 12 22 22 C 1.52998 * 117.49965 * 181.99563 * 20 19 12 23 23 H 1.09000 * 109.47000 * 265.91070 * 1 2 3 24 24 H 1.08998 * 109.46400 * 25.90477 * 1 2 3 25 25 H 1.08996 * 109.47241 * 145.91050 * 1 2 3 26 26 H 0.96998 * 119.99518 * 179.97438 * 6 5 3 27 27 H 1.09010 * 109.46927 * 216.10769 * 11 2 1 28 28 H 1.08991 * 109.47684 * 336.10967 * 11 2 1 29 29 H 1.08999 * 108.83852 * 279.72253 * 14 12 11 30 30 H 1.08997 * 108.84072 * 38.18373 * 14 12 11 31 31 H 1.09000 * 109.03842 * 182.06308 * 15 14 12 32 32 H 1.08993 * 109.03820 * 300.93553 * 15 14 12 33 33 H 1.08997 * 109.57210 * 42.56415 * 16 15 14 34 34 H 1.09002 * 109.56947 * 162.93805 * 16 15 14 35 35 H 1.09004 * 108.78982 * 212.64734 * 17 16 15 36 36 H 1.08997 * 108.79125 * 330.98101 * 17 16 15 37 37 H 1.09003 * 108.70977 * 78.74655 * 18 17 16 38 38 H 1.08997 * 108.71453 * 196.88742 * 18 17 16 39 39 H 1.08997 * 115.55053 * 36.32656 * 20 19 12 40 40 H 1.08995 * 117.49533 * 359.97438 * 21 20 19 41 41 H 1.08997 * 117.50019 * 145.02038 * 21 20 19 42 42 H 1.09004 * 117.49695 * 214.97799 * 22 20 19 43 43 H 1.09003 * 117.50197 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.0963 1.2628 -0.5143 5 6 1.6273 2.2889 0.6611 6 7 0.5329 2.1666 1.3821 7 14 2.4775 3.9469 0.5276 8 1 1.9274 4.6932 -0.6326 9 1 2.2447 4.7241 1.7714 10 1 3.9358 3.7416 0.3378 11 6 2.1974 -1.2688 -0.0006 12 6 2.5855 -1.6331 -1.4350 13 1 3.1884 -0.8341 -1.8666 14 6 1.3147 -1.8386 -2.2801 15 6 1.5630 -1.7013 -3.7110 16 6 2.5712 -2.7563 -4.2190 17 6 3.9602 -2.3325 -3.8227 18 6 4.3994 -2.9105 -2.4654 19 7 3.3370 -2.8650 -1.4376 20 6 3.8819 -3.1520 -0.1039 21 6 5.3942 -3.0180 0.0852 22 6 4.7466 -4.4046 0.0513 23 1 -0.3633 -0.0733 1.0251 24 1 -0.3632 0.9244 -0.4490 25 1 -0.3633 -0.8510 -0.5760 26 1 0.1681 2.9374 1.8443 27 1 3.0982 -1.1687 0.6051 28 1 1.5654 -2.0534 0.4152 29 1 0.9198 -2.8356 -2.0853 30 1 0.5701 -1.1009 -1.9812 31 1 0.6222 -1.8209 -4.2482 32 1 1.9600 -0.7058 -3.9091 33 1 2.3433 -3.7241 -3.7723 34 1 2.5075 -2.8292 -5.3047 35 1 4.6607 -2.6646 -4.5890 36 1 3.9926 -1.2445 -3.7660 37 1 4.7034 -3.9475 -2.6089 38 1 5.2567 -2.3424 -2.1043 39 1 3.2432 -2.8743 0.7346 40 1 5.9849 -2.7172 -0.7801 41 1 5.7506 -2.6525 1.0483 42 1 4.6772 -4.9507 0.9921 43 1 4.9110 -5.0159 -0.8361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260367262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:25 Heat of formation + Delta-G solvation = 64.041250 kcal Electronic energy + Delta-G solvation = -20279.739452 eV Core-core repulsion = 17554.902185 eV Total energy + Delta-G solvation = -2724.837267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.73880 -36.50768 -35.45547 -32.68623 -32.03377 -30.56545 -27.11883 -25.88598 -25.60687 -23.38339 -22.25672 -21.64386 -20.60070 -19.98670 -18.02270 -16.62712 -16.50247 -15.74334 -14.69735 -14.45589 -14.19131 -14.01676 -13.87219 -13.26008 -12.97898 -12.83016 -12.29878 -12.05715 -11.87862 -11.60828 -11.38832 -11.06825 -10.90036 -10.81281 -10.61682 -10.50878 -10.40518 -10.19186 -10.12512 -10.08127 -9.95321 -9.84187 -9.65478 -9.55072 -8.49250 -7.59575 -6.52731 -5.72791 -3.26842 3.37313 3.43858 3.45068 3.94207 4.33496 4.51662 4.95687 5.03758 5.11748 5.16043 5.23764 5.36969 5.43243 5.47577 5.58330 5.73788 5.77242 5.81085 5.90107 5.97921 6.00983 6.11001 6.13671 6.20904 6.24622 6.30478 6.35743 6.45336 6.54457 6.70760 6.71808 6.75590 6.88897 6.91151 7.11269 7.36007 7.53734 7.72604 7.76391 7.84131 8.50448 9.28279 9.88715 10.44070 11.32784 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.007144 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.272319 B = 3918.264664 C = 4333.588923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.595 5.595 3 C -0.256 4.256 4 H 0.060 0.940 5 C 0.010 3.990 6 N -0.903 5.903 7 Si 0.901 3.099 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.148 3.852 12 C 0.076 3.924 13 H 0.048 0.952 14 C -0.111 4.111 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.119 4.119 18 C 0.055 3.945 19 N -0.508 5.508 20 C 0.029 3.971 21 C -0.228 4.228 22 C -0.181 4.181 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.002 0.998 26 H 0.253 0.747 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 -11.054 -7.173 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.318 5.318 3 C -0.386 4.386 4 H 0.077 0.923 5 C -0.189 4.189 6 N -0.547 5.547 7 Si 0.731 3.269 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.021 3.979 12 C -0.034 4.034 13 H 0.066 0.934 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.072 4.072 19 N -0.231 5.231 20 C -0.080 4.080 21 C -0.267 4.267 22 C -0.219 4.219 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.152 0.848 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.095 -11.241 -7.199 14.288 hybrid contribution 1.101 1.614 0.127 1.958 sum 6.196 -9.626 -7.072 13.457 Atomic orbital electron populations 1.20853 0.83175 0.96892 0.97678 1.43729 1.01444 1.00451 1.86138 1.19038 1.04652 0.88061 1.26860 0.92264 1.25259 0.97893 0.99043 0.96708 1.70009 1.22135 1.29279 1.33292 0.86326 0.79328 0.84253 0.77037 1.21428 1.21634 1.20471 1.21155 0.95829 0.88713 0.92249 1.22044 0.93735 0.87935 0.99718 0.93386 1.20552 0.98419 1.01999 0.93886 1.20562 0.98428 0.98492 0.97360 1.21302 0.94491 0.99970 0.98993 1.21371 0.97523 1.01068 0.95667 1.22526 0.93055 1.00160 0.91484 1.60707 1.24435 1.35940 1.01997 1.22967 0.91040 1.00350 0.93651 1.23522 0.99058 1.00985 1.03138 1.23044 1.05278 0.91051 1.02551 0.96295 0.93501 0.97985 0.93709 0.93495 0.93902 0.92580 0.90218 0.93089 0.92731 0.91210 0.93093 0.92227 0.92162 0.91801 0.94298 0.84764 0.88528 0.89081 0.89004 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 8.09 59.85 0.48 4.37 16 2 N -0.59 -14.85 2.59 -181.12 -0.47 -15.32 16 3 C -0.26 -7.03 9.54 -15.06 -0.14 -7.18 16 4 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 5 C 0.01 0.28 5.17 -17.43 -0.09 0.19 16 6 N -0.90 -26.44 11.06 55.49 0.61 -25.82 16 7 Si 0.90 21.93 29.56 -169.99 -5.02 16.91 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.15 3.09 3.71 -4.04 -0.01 3.08 16 12 C 0.08 1.39 2.20 -68.59 -0.15 1.24 16 13 H 0.05 0.99 6.79 -51.93 -0.35 0.63 16 14 C -0.11 -1.92 4.67 -29.59 -0.14 -2.05 16 15 C -0.11 -1.68 5.34 -29.31 -0.16 -1.84 16 16 C -0.11 -1.45 5.63 -27.16 -0.15 -1.60 16 17 C -0.12 -1.55 5.28 -27.48 -0.15 -1.70 16 18 C 0.05 0.76 4.54 -2.79 -0.01 0.75 16 19 N -0.51 -7.95 4.23 -218.65 -0.92 -8.88 16 20 C 0.03 0.44 4.96 -67.71 -0.34 0.10 16 21 C -0.23 -3.09 9.66 -26.69 -0.26 -3.34 16 22 C -0.18 -2.26 10.00 -26.69 -0.27 -2.53 16 23 H 0.02 0.50 7.70 -51.93 -0.40 0.10 16 24 H 0.05 1.23 7.25 -51.93 -0.38 0.86 16 25 H 0.00 0.04 6.18 -51.93 -0.32 -0.28 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.05 1.01 6.42 -51.92 -0.33 0.68 16 28 H 0.04 0.87 7.49 -51.93 -0.39 0.48 16 29 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.08 1.56 4.63 -51.93 -0.24 1.32 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.88 7.59 -51.93 -0.39 0.49 16 33 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.88 6.65 -51.93 -0.35 0.53 16 37 H 0.06 0.81 7.11 -51.93 -0.37 0.44 16 38 H 0.04 0.55 5.50 -51.93 -0.29 0.27 16 39 H 0.13 2.16 5.25 -51.93 -0.27 1.88 16 40 H 0.10 1.29 5.61 -51.93 -0.29 1.00 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.08 7.13 -51.93 -0.37 0.71 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -28.45 311.59 -9.72 -38.17 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.23 Total: 0.77 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.38 Total: -10.52 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.78 Total: -50.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.45 -9.72 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.209 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds