Wall clock time and date at job start Mon Mar 30 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00580 * 2 1 4 4 H 1.07993 * 120.00400 * 213.36263 * 3 2 1 5 5 C 1.38816 * 119.99580 * 33.36029 * 3 2 1 6 6 N 1.31621 * 119.99943 * 5.77204 * 5 3 2 7 7 Si 1.86803 * 119.99784 * 185.76914 * 5 3 2 8 8 H 1.48507 * 109.46624 * 90.00462 * 7 5 3 9 9 H 1.48503 * 109.46992 * 209.99793 * 7 5 3 10 10 H 1.48493 * 109.47339 * 330.00044 * 7 5 3 11 11 C 1.46503 * 119.99496 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47247 * 96.11385 * 11 2 1 13 13 H 1.09004 * 109.69433 * 57.99276 * 12 11 2 14 14 C 1.53989 * 109.69583 * 297.44616 * 12 11 2 15 15 C 1.45872 * 112.66402 * 158.90057 * 14 12 11 16 16 C 1.54522 * 111.67398 * 61.49837 * 15 14 12 17 17 C 1.50535 * 108.86038 * 282.75015 * 16 15 14 18 18 C 1.53923 * 112.93664 * 91.75500 * 17 16 15 19 19 N 1.44301 * 109.69722 * 178.54047 * 12 11 2 20 20 C 1.46904 * 110.99846 * 341.05511 * 19 12 11 21 21 C 1.53004 * 117.49964 * 250.65610 * 20 19 12 22 22 C 1.52998 * 117.49965 * 181.99563 * 20 19 12 23 23 H 1.09000 * 109.47000 * 265.91070 * 1 2 3 24 24 H 1.08998 * 109.46400 * 25.90477 * 1 2 3 25 25 H 1.08996 * 109.47241 * 145.91050 * 1 2 3 26 26 H 0.96998 * 119.99518 * 179.97438 * 6 5 3 27 27 H 1.09010 * 109.46927 * 216.10769 * 11 2 1 28 28 H 1.08991 * 109.47684 * 336.10967 * 11 2 1 29 29 H 1.08999 * 108.83852 * 279.72253 * 14 12 11 30 30 H 1.08997 * 108.84072 * 38.18373 * 14 12 11 31 31 H 1.09000 * 109.03842 * 182.06308 * 15 14 12 32 32 H 1.08993 * 109.03820 * 300.93553 * 15 14 12 33 33 H 1.08997 * 109.57210 * 42.56415 * 16 15 14 34 34 H 1.09002 * 109.56947 * 162.93805 * 16 15 14 35 35 H 1.09004 * 108.78982 * 212.64734 * 17 16 15 36 36 H 1.08997 * 108.79125 * 330.98101 * 17 16 15 37 37 H 1.09003 * 108.70977 * 78.74655 * 18 17 16 38 38 H 1.08997 * 108.71453 * 196.88742 * 18 17 16 39 39 H 1.08997 * 115.55053 * 36.32656 * 20 19 12 40 40 H 1.08995 * 117.49533 * 359.97438 * 21 20 19 41 41 H 1.08997 * 117.50019 * 145.02038 * 21 20 19 42 42 H 1.09004 * 117.49695 * 214.97799 * 22 20 19 43 43 H 1.09003 * 117.50197 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.0963 1.2628 -0.5143 5 6 1.6273 2.2889 0.6611 6 7 0.5329 2.1666 1.3821 7 14 2.4775 3.9469 0.5276 8 1 1.9274 4.6932 -0.6326 9 1 2.2447 4.7241 1.7714 10 1 3.9358 3.7416 0.3378 11 6 2.1974 -1.2688 -0.0006 12 6 2.5855 -1.6331 -1.4350 13 1 3.1884 -0.8341 -1.8666 14 6 1.3147 -1.8386 -2.2801 15 6 1.5630 -1.7013 -3.7110 16 6 2.5712 -2.7563 -4.2190 17 6 3.9602 -2.3325 -3.8227 18 6 4.3994 -2.9105 -2.4654 19 7 3.3370 -2.8650 -1.4376 20 6 3.8819 -3.1520 -0.1039 21 6 5.3942 -3.0180 0.0852 22 6 4.7466 -4.4046 0.0513 23 1 -0.3633 -0.0733 1.0251 24 1 -0.3632 0.9244 -0.4490 25 1 -0.3633 -0.8510 -0.5760 26 1 0.1681 2.9374 1.8443 27 1 3.0982 -1.1687 0.6051 28 1 1.5654 -2.0534 0.4152 29 1 0.9198 -2.8356 -2.0853 30 1 0.5701 -1.1009 -1.9812 31 1 0.6222 -1.8209 -4.2482 32 1 1.9600 -0.7058 -3.9091 33 1 2.3433 -3.7241 -3.7723 34 1 2.5075 -2.8292 -5.3047 35 1 4.6607 -2.6646 -4.5890 36 1 3.9926 -1.2445 -3.7660 37 1 4.7034 -3.9475 -2.6089 38 1 5.2567 -2.3424 -2.1043 39 1 3.2432 -2.8743 0.7346 40 1 5.9849 -2.7172 -0.7801 41 1 5.7506 -2.6525 1.0483 42 1 4.6772 -4.9507 0.9921 43 1 4.9110 -5.0159 -0.8361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260367262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:25 Heat of formation + Delta-G solvation = 48.446395 kcal Electronic energy + Delta-G solvation = -20280.415696 eV Core-core repulsion = 17554.902185 eV Total energy + Delta-G solvation = -2725.513511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01933 -37.81038 -37.14257 -34.28662 -33.29640 -32.37012 -28.75510 -27.79838 -26.94545 -24.94796 -23.34415 -23.07244 -22.13637 -21.24162 -19.44254 -18.42275 -17.91006 -17.22613 -16.43774 -15.77999 -15.63779 -15.37643 -15.17441 -14.85528 -14.52517 -14.48421 -13.75835 -13.51169 -13.20245 -13.06070 -12.83998 -12.76822 -12.54331 -12.49498 -12.20843 -12.04326 -11.89086 -11.75577 -11.60005 -11.47929 -11.41211 -11.11443 -11.09406 -10.89177 -10.61709 -8.88983 -8.55251 -7.85902 -5.43156 1.43074 1.43255 1.52551 2.46626 2.77472 3.20061 3.28440 3.73357 3.86018 3.90881 4.02703 4.07318 4.08719 4.23249 4.27592 4.38228 4.49526 4.57726 4.69004 4.75247 4.76895 4.85342 4.87441 4.93814 5.04222 5.07630 5.09076 5.18249 5.20856 5.28570 5.30004 5.41240 5.46291 5.50579 5.56274 5.61306 5.63053 5.69102 6.29404 6.33722 6.46832 7.16446 7.85156 8.34845 9.17382 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.007144 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.272319 B = 3918.264664 C = 4333.588923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.609 5.609 3 C -0.262 4.262 4 H 0.055 0.945 5 C -0.043 4.043 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.271 1.271 11 C 0.153 3.847 12 C 0.094 3.906 13 H 0.021 0.979 14 C -0.103 4.103 15 C -0.111 4.111 16 C -0.101 4.101 17 C -0.118 4.118 18 C 0.053 3.947 19 N -0.505 5.505 20 C 0.000 4.000 21 C -0.228 4.228 22 C -0.153 4.153 23 H -0.006 1.006 24 H 0.020 0.980 25 H 0.033 0.967 26 H 0.250 0.750 27 H 0.036 0.964 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 -12.610 -8.525 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.333 5.333 3 C -0.392 4.392 4 H 0.073 0.927 5 C -0.239 4.239 6 N -0.579 5.579 7 Si 0.792 3.208 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.196 1.196 11 C 0.027 3.973 12 C -0.017 4.017 13 H 0.039 0.961 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.156 4.156 18 C -0.074 4.074 19 N -0.228 5.228 20 C -0.110 4.110 21 C -0.267 4.267 22 C -0.191 4.191 23 H 0.013 0.987 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.465 -12.829 -8.565 16.725 hybrid contribution 0.712 2.023 0.557 2.216 sum 7.177 -10.806 -8.008 15.245 Atomic orbital electron populations 1.20602 0.83203 0.96785 0.96348 1.43924 1.01714 1.01292 1.86372 1.19246 1.04475 0.89262 1.26259 0.92724 1.25979 0.98687 1.02408 0.96798 1.70163 1.23455 1.29934 1.34365 0.85328 0.78639 0.80059 0.76770 1.21061 1.21742 1.19578 1.21217 0.94929 0.87048 0.94090 1.21632 0.94248 0.88492 0.97304 0.96135 1.20461 0.97100 1.01295 0.95247 1.20538 0.99835 0.98546 0.95974 1.21242 0.93525 0.98837 1.00292 1.21392 0.98346 0.99784 0.96046 1.22638 0.92203 1.01352 0.91194 1.60788 1.25381 1.33691 1.02947 1.22959 0.91748 1.03403 0.92841 1.23550 0.97723 1.02158 1.03291 1.23098 1.01996 0.90182 1.03793 0.98747 0.96103 0.94908 0.94093 0.94562 0.93330 0.91956 0.92899 0.91784 0.94359 0.91155 0.90867 0.89524 0.94198 0.89735 0.94760 0.86529 0.88202 0.89142 0.87524 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.84 8.09 127.77 1.03 9.87 16 2 N -0.61 -31.23 2.59 -726.94 -1.88 -33.11 16 3 C -0.26 -14.71 9.54 84.03 0.80 -13.90 16 4 H 0.06 3.07 7.83 -2.91 -0.02 3.05 16 5 C -0.04 -2.43 5.17 84.86 0.44 -2.00 16 6 N -0.93 -56.06 11.06 21.65 0.24 -55.82 16 7 Si 0.96 45.73 29.56 68.60 2.03 47.75 16 8 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 9 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 C 0.15 6.52 3.71 86.38 0.32 6.84 16 12 C 0.09 3.43 2.20 45.73 0.10 3.53 16 13 H 0.02 0.86 6.79 -2.38 -0.02 0.84 16 14 C -0.10 -3.51 4.67 28.74 0.13 -3.38 16 15 C -0.11 -3.24 5.34 28.93 0.15 -3.08 16 16 C -0.10 -2.39 5.63 30.31 0.17 -2.22 16 17 C -0.12 -2.81 5.28 30.11 0.16 -2.65 16 18 C 0.05 1.34 4.54 86.42 0.39 1.73 16 19 N -0.51 -15.13 4.23 -845.67 -3.58 -18.71 16 20 C 0.00 -0.01 4.96 44.92 0.22 0.21 16 21 C -0.23 -5.80 9.66 30.62 0.30 -5.51 16 22 C -0.15 -3.39 10.00 30.62 0.31 -3.08 16 23 H -0.01 -0.32 7.70 -2.39 -0.02 -0.33 16 24 H 0.02 1.11 7.25 -2.39 -0.02 1.10 16 25 H 0.03 1.43 6.18 -2.39 -0.01 1.41 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.04 1.60 6.42 -2.38 -0.02 1.59 16 28 H 0.05 1.99 7.49 -2.39 -0.02 1.97 16 29 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 30 H 0.05 2.07 4.63 -2.39 -0.01 2.06 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.23 7.59 -2.39 -0.02 1.21 16 33 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.12 6.65 -2.39 -0.02 1.10 16 37 H 0.08 1.83 7.11 -2.39 -0.02 1.81 16 38 H 0.03 0.91 5.50 -2.39 -0.01 0.90 16 39 H 0.12 3.75 5.25 -2.39 -0.01 3.74 16 40 H 0.10 2.48 5.61 -2.39 -0.01 2.47 16 41 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.10 2.05 7.13 -2.39 -0.02 2.03 16 Total: -1.00 -61.70 311.59 2.31 -59.39 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.97 Total: 14.14 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.53 Total: -13.65 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -5.22 Total: -107.64 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -61.70 2.31 -59.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.840 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds