Wall clock time and date at job start Mon Mar 30 2020 05:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00353 * 2 1 4 4 C 1.50705 * 109.46971 * 66.04488 * 3 2 1 5 5 H 1.07998 * 120.00034 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00243 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00173 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47162 * 270.00219 * 8 6 4 10 10 H 1.48503 * 109.46677 * 29.99771 * 8 6 4 11 11 H 1.48501 * 109.47435 * 149.99492 * 8 6 4 12 12 C 1.46907 * 111.00109 * 236.04718 * 2 1 3 13 13 H 1.08997 * 109.03060 * 178.95464 * 12 2 1 14 14 C 1.54522 * 109.03956 * 59.99706 * 12 2 1 15 15 C 1.50584 * 108.83875 * 162.14158 * 14 12 2 16 16 C 1.53922 * 112.87559 * 91.84372 * 15 14 12 17 17 N 1.47940 * 113.32908 * 317.75353 * 16 15 14 18 18 C 1.46905 * 111.00000 * 192.18841 * 17 16 15 19 19 C 1.53000 * 117.49596 * 265.63609 * 18 17 16 20 20 C 1.52995 * 117.49898 * 197.01371 * 18 17 16 21 21 C 1.44309 * 113.64356 * 318.13033 * 17 16 15 22 22 C 1.45879 * 109.03650 * 297.91022 * 12 2 1 23 23 H 1.09005 * 109.47020 * 59.99516 * 1 2 3 24 24 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47192 * 300.00163 * 1 2 3 26 26 H 1.08999 * 109.47309 * 306.05227 * 3 2 1 27 27 H 1.09002 * 109.47263 * 186.04410 * 3 2 1 28 28 H 0.96997 * 119.99953 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.57537 * 282.02651 * 14 12 2 30 30 H 1.09000 * 109.56994 * 42.39934 * 14 12 2 31 31 H 1.09001 * 108.83183 * 330.96922 * 15 14 12 32 32 H 1.09005 * 108.73050 * 212.65268 * 15 14 12 33 33 H 1.08997 * 108.71766 * 196.75317 * 16 15 14 34 34 H 1.09006 * 108.60958 * 78.66961 * 16 15 14 35 35 H 1.09007 * 115.54902 * 51.33610 * 18 17 16 36 36 H 1.09001 * 117.50161 * 359.97438 * 19 18 17 37 37 H 1.09003 * 117.50133 * 145.01980 * 19 18 17 38 38 H 1.09004 * 117.49566 * 214.97485 * 20 18 17 39 39 H 1.09002 * 117.50072 * 359.97165 * 20 18 17 40 40 H 1.09004 * 109.69230 * 335.70837 * 21 17 16 41 41 H 1.08998 * 109.70029 * 215.10982 * 21 17 16 42 42 H 1.08994 * 108.84576 * 302.87963 * 22 12 2 43 43 H 1.08994 * 108.84286 * 61.23913 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0269 3.3494 1.5285 7 7 2.7121 4.0019 0.6150 8 14 1.5831 4.1868 3.1383 9 1 0.2705 4.8667 2.9972 10 1 1.5008 3.1709 4.2183 11 1 2.6253 5.1882 3.4792 12 6 1.9955 -0.7660 -1.1376 13 1 3.0846 -0.7295 -1.1171 14 6 1.4942 -0.1257 -2.4516 15 6 2.3560 -0.6094 -3.5878 16 6 1.7966 -1.8720 -4.2676 17 7 1.2778 -2.8724 -3.3092 18 6 1.0270 -4.1581 -3.9742 19 6 -0.3911 -4.4260 -4.4820 20 6 0.1327 -5.1658 -3.2494 21 6 2.1131 -3.0466 -2.1454 22 6 1.5634 -2.1541 -1.0174 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.5611 1.9274 -0.8308 27 1 3.0798 1.3443 -0.1082 28 1 2.9861 4.9182 0.7768 29 1 0.4587 -0.4165 -2.6277 30 1 1.5633 0.9596 -2.3785 31 1 3.3525 -0.8293 -3.2047 32 1 2.4334 0.1843 -4.3309 33 1 2.5891 -2.3316 -4.8581 34 1 0.9885 -1.5775 -4.9373 35 1 1.8556 -4.5524 -4.5627 36 1 -1.1382 -3.6485 -4.3222 37 1 -0.4960 -4.9967 -5.4047 38 1 0.3725 -6.2232 -3.3613 39 1 -0.2694 -4.8750 -2.2789 40 1 3.1363 -2.7530 -2.3805 41 1 2.0927 -4.0901 -1.8313 42 1 1.9042 -2.5472 -0.0597 43 1 0.4742 -2.1871 -1.0416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260369957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:05 Heat of formation + Delta-G solvation = 37.277369 kcal Electronic energy + Delta-G solvation = -19617.434693 eV Core-core repulsion = 16891.436857 eV Total energy + Delta-G solvation = -2725.997836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60096 -37.56198 -35.07416 -32.71146 -32.02882 -30.93530 -27.13241 -25.91493 -25.24704 -23.93950 -22.34121 -21.32946 -21.04455 -19.54567 -18.93503 -16.71126 -16.24166 -15.49404 -15.35888 -14.61094 -14.54528 -13.98206 -13.79553 -13.36194 -13.16915 -12.93876 -12.59455 -12.25266 -11.92683 -11.60704 -11.56196 -11.23150 -11.08342 -10.95847 -10.79133 -10.66099 -10.56483 -10.40584 -10.28456 -10.14384 -10.01734 -9.95444 -9.55156 -9.11109 -8.37307 -8.16478 -7.04322 -5.97118 -3.97706 3.34974 3.40937 3.45699 3.68675 3.73908 4.47114 4.82173 4.85181 4.94748 4.99172 5.09229 5.17555 5.33044 5.36625 5.38530 5.51297 5.53626 5.59012 5.77885 5.83646 5.86393 5.92740 5.97148 6.08621 6.13401 6.23590 6.31421 6.40093 6.44419 6.58877 6.62335 6.79920 6.87720 6.92080 7.20265 7.33000 7.41977 7.49805 7.88142 8.19027 8.32869 8.66383 9.10577 9.66146 11.13680 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043742 B = 0.004576 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.969002 B = 6117.417397 C = 6423.732924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.537 5.537 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.089 3.911 13 H 0.064 0.936 14 C -0.145 4.145 15 C -0.115 4.115 16 C 0.072 3.928 17 N -0.519 5.519 18 C 0.008 3.992 19 C -0.166 4.166 20 C -0.169 4.169 21 C 0.068 3.932 22 C -0.105 4.105 23 H 0.013 0.987 24 H 0.047 0.953 25 H 0.067 0.933 26 H -0.005 1.005 27 H 0.026 0.974 28 H 0.260 0.740 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 -15.563 -10.269 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.260 5.260 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.213 1.213 12 C -0.020 4.020 13 H 0.082 0.918 14 C -0.184 4.184 15 C -0.153 4.153 16 C -0.055 4.055 17 N -0.244 5.244 18 C -0.101 4.101 19 C -0.204 4.204 20 C -0.206 4.206 21 C -0.060 4.060 22 C -0.143 4.143 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.012 0.988 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.168 -15.421 -9.672 18.477 hybrid contribution 0.370 0.782 -0.294 0.913 sum -2.798 -14.640 -9.966 17.930 Atomic orbital electron populations 1.22218 0.89334 0.99197 1.00495 1.62431 1.06855 1.17778 1.38889 1.19720 0.95142 0.82034 0.96352 1.21211 1.34471 0.96854 1.01821 0.91981 1.24982 0.95387 0.97387 0.96902 1.69964 1.38596 1.11332 1.34110 0.86530 0.77937 0.79227 0.83918 1.20808 1.19799 1.21321 1.20643 0.98988 0.93442 0.88934 0.91767 1.21993 0.99974 1.01147 0.95257 1.21342 0.99552 0.95852 0.98570 1.22314 0.97757 0.91951 0.93518 1.60490 1.50192 1.06194 1.07555 1.22364 0.93755 0.91741 1.02210 1.23016 0.96942 1.02962 0.97480 1.22999 1.03543 0.96440 0.97663 1.21752 0.94565 0.99297 0.90400 1.20560 1.01988 0.94760 0.97030 0.96815 0.93458 0.91410 0.98781 0.95591 0.93048 0.91480 0.91245 0.92425 0.91827 0.95462 0.91426 0.90193 0.88224 0.89170 0.88998 0.88131 0.94074 0.91562 0.91603 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.61 60.06 0.52 1.25 16 2 N -0.54 -11.79 4.70 -239.46 -1.12 -12.92 16 3 C 0.19 5.09 4.19 -4.97 -0.02 5.07 16 4 C -0.50 -14.44 8.51 -34.44 -0.29 -14.74 16 5 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 C 0.09 1.62 1.79 -70.28 -0.13 1.49 16 13 H 0.06 1.23 7.46 -51.93 -0.39 0.85 16 14 C -0.14 -2.48 3.92 -27.14 -0.11 -2.58 16 15 C -0.11 -1.63 5.28 -27.46 -0.14 -1.77 16 16 C 0.07 0.89 5.44 -2.77 -0.02 0.87 16 17 N -0.52 -6.50 4.11 -226.64 -0.93 -7.43 16 18 C 0.01 0.08 4.81 -67.71 -0.33 -0.24 16 19 C -0.17 -1.57 10.46 -26.73 -0.28 -1.85 16 20 C -0.17 -1.58 9.80 -26.73 -0.26 -1.84 16 21 C 0.07 0.89 5.32 -4.70 -0.02 0.86 16 22 C -0.11 -1.61 4.45 -29.59 -0.13 -1.75 16 23 H 0.01 0.27 6.91 -51.93 -0.36 -0.09 16 24 H 0.05 0.83 6.14 -51.93 -0.32 0.51 16 25 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 26 H -0.01 -0.15 6.53 -51.93 -0.34 -0.49 16 27 H 0.03 0.74 7.99 -51.93 -0.41 0.32 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.07 1.16 7.17 -51.93 -0.37 0.79 16 30 H 0.07 1.39 6.04 -51.93 -0.31 1.08 16 31 H 0.06 0.83 6.66 -51.93 -0.35 0.48 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.31 8.01 -51.93 -0.42 -0.10 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.55 6.79 -51.93 -0.35 0.19 16 41 H 0.07 0.78 7.18 -51.93 -0.37 0.41 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.12 6.14 -51.93 -0.32 0.80 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -29.57 321.39 -10.36 -39.93 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.56 Total: -1.25 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.31 Total: -13.76 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -1.32 Total: -46.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.57 -10.36 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.212 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds