Wall clock time and date at job start Mon Mar 30 2020 05:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00353 * 2 1 4 4 C 1.50705 * 109.46971 * 66.04488 * 3 2 1 5 5 H 1.07998 * 120.00034 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00243 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00173 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47162 * 270.00219 * 8 6 4 10 10 H 1.48503 * 109.46677 * 29.99771 * 8 6 4 11 11 H 1.48501 * 109.47435 * 149.99492 * 8 6 4 12 12 C 1.46907 * 111.00109 * 236.04718 * 2 1 3 13 13 H 1.08997 * 109.03060 * 178.95464 * 12 2 1 14 14 C 1.54522 * 109.03956 * 59.99706 * 12 2 1 15 15 C 1.50584 * 108.83875 * 162.14158 * 14 12 2 16 16 C 1.53922 * 112.87559 * 91.84372 * 15 14 12 17 17 N 1.47940 * 113.32908 * 317.75353 * 16 15 14 18 18 C 1.46905 * 111.00000 * 192.18841 * 17 16 15 19 19 C 1.53000 * 117.49596 * 265.63609 * 18 17 16 20 20 C 1.52995 * 117.49898 * 197.01371 * 18 17 16 21 21 C 1.44309 * 113.64356 * 318.13033 * 17 16 15 22 22 C 1.45879 * 109.03650 * 297.91022 * 12 2 1 23 23 H 1.09005 * 109.47020 * 59.99516 * 1 2 3 24 24 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47192 * 300.00163 * 1 2 3 26 26 H 1.08999 * 109.47309 * 306.05227 * 3 2 1 27 27 H 1.09002 * 109.47263 * 186.04410 * 3 2 1 28 28 H 0.96997 * 119.99953 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.57537 * 282.02651 * 14 12 2 30 30 H 1.09000 * 109.56994 * 42.39934 * 14 12 2 31 31 H 1.09001 * 108.83183 * 330.96922 * 15 14 12 32 32 H 1.09005 * 108.73050 * 212.65268 * 15 14 12 33 33 H 1.08997 * 108.71766 * 196.75317 * 16 15 14 34 34 H 1.09006 * 108.60958 * 78.66961 * 16 15 14 35 35 H 1.09007 * 115.54902 * 51.33610 * 18 17 16 36 36 H 1.09001 * 117.50161 * 359.97438 * 19 18 17 37 37 H 1.09003 * 117.50133 * 145.01980 * 19 18 17 38 38 H 1.09004 * 117.49566 * 214.97485 * 20 18 17 39 39 H 1.09002 * 117.50072 * 359.97165 * 20 18 17 40 40 H 1.09004 * 109.69230 * 335.70837 * 21 17 16 41 41 H 1.08998 * 109.70029 * 215.10982 * 21 17 16 42 42 H 1.08994 * 108.84576 * 302.87963 * 22 12 2 43 43 H 1.08994 * 108.84286 * 61.23913 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0269 3.3494 1.5285 7 7 2.7121 4.0019 0.6150 8 14 1.5831 4.1868 3.1383 9 1 0.2705 4.8667 2.9972 10 1 1.5008 3.1709 4.2183 11 1 2.6253 5.1882 3.4792 12 6 1.9955 -0.7660 -1.1376 13 1 3.0846 -0.7295 -1.1171 14 6 1.4942 -0.1257 -2.4516 15 6 2.3560 -0.6094 -3.5878 16 6 1.7966 -1.8720 -4.2676 17 7 1.2778 -2.8724 -3.3092 18 6 1.0270 -4.1581 -3.9742 19 6 -0.3911 -4.4260 -4.4820 20 6 0.1327 -5.1658 -3.2494 21 6 2.1131 -3.0466 -2.1454 22 6 1.5634 -2.1541 -1.0174 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.5611 1.9274 -0.8308 27 1 3.0798 1.3443 -0.1082 28 1 2.9861 4.9182 0.7768 29 1 0.4587 -0.4165 -2.6277 30 1 1.5633 0.9596 -2.3785 31 1 3.3525 -0.8293 -3.2047 32 1 2.4334 0.1843 -4.3309 33 1 2.5891 -2.3316 -4.8581 34 1 0.9885 -1.5775 -4.9373 35 1 1.8556 -4.5524 -4.5627 36 1 -1.1382 -3.6485 -4.3222 37 1 -0.4960 -4.9967 -5.4047 38 1 0.3725 -6.2232 -3.3613 39 1 -0.2694 -4.8750 -2.2789 40 1 3.1363 -2.7530 -2.3805 41 1 2.0927 -4.0901 -1.8313 42 1 1.9042 -2.5472 -0.0597 43 1 0.4742 -2.1871 -1.0416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260369957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:04 Heat of formation + Delta-G solvation = 18.611870 kcal Electronic energy + Delta-G solvation = -19618.244090 eV Core-core repulsion = 16891.436857 eV Total energy + Delta-G solvation = -2726.807233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84542 -38.77075 -36.33431 -34.72700 -33.19883 -32.44419 -29.13395 -27.42338 -26.50481 -25.58593 -23.25398 -22.67469 -22.24392 -20.61090 -20.45160 -18.56346 -17.51342 -17.00742 -16.45776 -16.33714 -15.87157 -15.34326 -15.21589 -14.89065 -14.51606 -14.35489 -13.97045 -13.64318 -13.52323 -13.15827 -12.83695 -12.67727 -12.58497 -12.34593 -12.26957 -12.12160 -12.04910 -11.86720 -11.77455 -11.47040 -11.31574 -11.19057 -11.14795 -10.84426 -10.59273 -9.12042 -8.87260 -8.19049 -6.29291 1.40463 1.42096 1.53846 2.40841 2.81533 2.94376 3.12826 3.38661 3.72645 3.94972 4.08773 4.09808 4.18622 4.25986 4.30050 4.34123 4.46053 4.53274 4.64620 4.70761 4.74581 4.80510 4.84770 4.87202 4.93784 5.04149 5.09308 5.11042 5.16463 5.18201 5.25888 5.31388 5.35541 5.38801 5.44873 5.56203 5.68874 6.09029 6.26324 6.34548 6.42680 6.71928 6.88131 7.40418 8.91725 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043742 B = 0.004576 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.969002 B = 6117.417397 C = 6423.732924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.546 5.546 3 C 0.212 3.788 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.265 1.265 11 H -0.281 1.281 12 C 0.091 3.909 13 H 0.049 0.951 14 C -0.131 4.131 15 C -0.112 4.112 16 C 0.078 3.922 17 N -0.532 5.532 18 C -0.003 4.003 19 C -0.162 4.162 20 C -0.162 4.162 21 C 0.078 3.922 22 C -0.097 4.097 23 H 0.008 0.992 24 H 0.078 0.922 25 H 0.051 0.949 26 H -0.032 1.032 27 H -0.005 1.005 28 H 0.264 0.736 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -17.336 -10.435 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.269 5.269 3 C 0.085 3.915 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.189 1.189 11 H -0.207 1.207 12 C -0.017 4.017 13 H 0.067 0.933 14 C -0.171 4.171 15 C -0.150 4.150 16 C -0.049 4.049 17 N -0.257 5.257 18 C -0.112 4.112 19 C -0.199 4.199 20 C -0.200 4.200 21 C -0.051 4.051 22 C -0.135 4.135 23 H 0.027 0.973 24 H 0.096 0.904 25 H 0.070 0.930 26 H -0.014 1.014 27 H 0.013 0.987 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.866 -17.220 -9.850 20.212 hybrid contribution 0.581 1.310 -0.283 1.461 sum -3.285 -15.911 -10.133 19.148 Atomic orbital electron populations 1.22171 0.88041 1.00831 0.99439 1.62354 1.08037 1.15248 1.41232 1.19318 0.93063 0.84257 0.94820 1.21527 1.34744 0.97557 1.02513 0.92063 1.25918 0.95003 0.98041 1.00713 1.70095 1.39442 1.11792 1.36264 0.85388 0.77954 0.78097 0.79213 1.19794 1.18914 1.20681 1.20726 0.98038 0.94759 0.88180 0.93259 1.21802 1.00630 0.98572 0.96069 1.21288 0.98731 0.97330 0.97637 1.22221 0.98357 0.90986 0.93312 1.60409 1.50038 1.07469 1.07751 1.22452 0.94629 0.91043 1.03037 1.23051 0.95741 1.02740 0.98414 1.23049 1.02601 0.97225 0.97103 1.21616 0.94186 0.99451 0.89812 1.20463 1.01721 0.93011 0.98305 0.97295 0.90351 0.93005 1.01444 0.98707 0.92752 0.91411 0.95030 0.92767 0.91163 0.93871 0.90940 0.89134 0.89459 0.87311 0.87066 0.89168 0.94347 0.89749 0.91850 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 8.61 127.69 1.10 2.86 16 2 N -0.55 -24.66 4.70 -911.52 -4.28 -28.94 16 3 C 0.21 11.74 4.19 85.56 0.36 12.10 16 4 C -0.53 -30.81 8.51 25.60 0.22 -30.59 16 5 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 6 C 0.00 0.06 5.46 84.65 0.46 0.52 16 7 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 8 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 C 0.09 3.39 1.79 43.25 0.08 3.47 16 13 H 0.05 1.96 7.46 -2.39 -0.02 1.95 16 14 C -0.13 -4.63 3.92 30.33 0.12 -4.51 16 15 C -0.11 -3.13 5.28 30.12 0.16 -2.97 16 16 C 0.08 1.79 5.44 86.41 0.47 2.26 16 17 N -0.53 -12.17 4.11 -870.97 -3.58 -15.76 16 18 C 0.00 -0.06 4.81 44.91 0.22 0.15 16 19 C -0.16 -2.60 10.46 30.59 0.32 -2.28 16 20 C -0.16 -2.56 9.80 30.59 0.30 -2.26 16 21 C 0.08 1.88 5.32 87.12 0.46 2.34 16 22 C -0.10 -2.88 4.45 28.74 0.13 -2.75 16 23 H 0.01 0.35 6.91 -2.38 -0.02 0.34 16 24 H 0.08 2.68 6.14 -2.39 -0.01 2.67 16 25 H 0.05 2.25 6.86 -2.38 -0.02 2.23 16 26 H -0.03 -1.91 6.53 -2.39 -0.02 -1.93 16 27 H -0.01 -0.31 7.99 -2.39 -0.02 -0.33 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.07 2.35 7.17 -2.39 -0.02 2.33 16 30 H 0.03 1.34 6.04 -2.39 -0.01 1.32 16 31 H 0.05 1.55 6.66 -2.39 -0.02 1.54 16 32 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.04 0.87 8.01 -2.39 -0.02 0.86 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.09 1.50 8.13 -2.38 -0.02 1.48 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 0.95 6.79 -2.39 -0.02 0.94 16 41 H 0.08 1.75 7.18 -2.39 -0.02 1.73 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.05 6.14 -2.39 -0.01 2.04 16 Total: -1.00 -64.75 321.39 -0.20 -64.95 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.96 Total: 11.44 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.39 Total: -21.65 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -7.58 Total: -102.07 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -64.75 -0.20 -64.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.561 kcal (2) G-P(sol) polarization free energy of solvation -64.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds