Wall clock time and date at job start Mon Mar 30 2020 03:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47479 * 110.99965 * 2 1 4 4 C 1.53517 * 87.99753 * 138.66774 * 3 2 1 5 5 C 1.53001 * 114.17059 * 220.35597 * 4 3 2 6 6 N 1.46901 * 109.46963 * 185.00028 * 5 4 3 7 7 C 1.39785 * 110.99788 * 66.04874 * 6 5 4 8 8 C 1.54426 * 111.76653 * 189.12506 * 7 6 5 9 9 C 1.50753 * 109.03044 * 282.58718 * 8 7 6 10 10 C 1.54173 * 112.60707 * 93.01727 * 9 8 7 11 11 C 1.53819 * 111.97313 * 318.49049 * 10 9 8 12 12 H 1.09008 * 109.04702 * 79.52300 * 11 10 9 13 13 C 1.50693 * 109.05538 * 198.48966 * 11 10 9 14 14 H 1.07998 * 120.00493 * 119.99713 * 13 11 10 15 15 C 1.37881 * 119.99889 * 300.00443 * 13 11 10 16 16 N 1.31512 * 120.00205 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99725 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47327 * 90.00208 * 17 15 13 19 19 H 1.48503 * 109.47125 * 209.99835 * 17 15 13 20 20 H 1.48497 * 109.47549 * 329.99648 * 17 15 13 21 21 C 1.47634 * 110.99951 * 194.93704 * 6 5 4 22 22 C 1.47487 * 110.99585 * 95.96965 * 2 1 3 23 23 H 1.09000 * 109.47085 * 60.00397 * 1 2 3 24 24 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47617 * 300.00333 * 1 2 3 26 26 H 1.09002 * 113.47562 * 253.46722 * 3 2 1 27 27 H 1.09003 * 113.47677 * 23.87325 * 3 2 1 28 28 H 1.09000 * 114.16717 * 87.65445 * 4 3 2 29 29 H 1.08994 * 109.47074 * 305.00412 * 5 4 3 30 30 H 1.08998 * 109.46919 * 65.00120 * 5 4 3 31 31 H 1.08997 * 109.01881 * 309.71253 * 7 6 5 32 32 H 1.09003 * 109.01999 * 68.61063 * 7 6 5 33 33 H 1.09001 * 109.54500 * 42.45623 * 8 7 6 34 34 H 1.09001 * 109.54515 * 162.72196 * 8 7 6 35 35 H 1.08990 * 108.85811 * 213.82369 * 9 8 7 36 36 H 1.09001 * 108.85228 * 332.22003 * 9 8 7 37 37 H 1.09004 * 108.98257 * 79.13212 * 10 9 8 38 38 H 1.09003 * 108.98140 * 197.93514 * 10 9 8 39 39 H 0.97000 * 120.00208 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.74413 * 269.98718 * 21 6 5 41 41 H 1.08998 * 109.74413 * 30.71282 * 21 6 5 42 42 H 1.09004 * 113.47787 * 336.06095 * 22 2 1 43 43 H 1.09001 * 113.47615 * 106.47267 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0538 0.9139 1.0132 5 6 3.3346 1.9214 2.1300 6 7 4.4380 1.4304 2.9663 7 6 5.6346 1.3918 2.2447 8 6 6.7529 0.6709 3.0285 9 6 7.2944 1.6034 4.0820 10 6 6.5929 1.4301 5.4439 11 6 5.0730 1.2503 5.2897 12 1 4.8639 0.2191 5.0048 13 6 4.4069 1.5401 6.6100 14 1 3.6795 2.3349 6.6849 15 6 4.7261 0.7907 7.7225 16 7 5.6116 -0.1773 7.6313 17 14 3.9008 1.1506 9.3592 18 1 2.6610 0.3417 9.4769 19 1 4.8261 0.8022 10.4673 20 1 3.5593 2.5938 9.4348 21 6 4.5078 2.1738 4.2399 22 6 1.9974 -0.1432 1.3695 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4187 1.6803 -0.9585 27 1 1.2996 2.1099 0.4046 28 1 3.9579 0.5066 0.5607 29 1 3.6092 2.8812 1.6927 30 1 2.4411 2.0434 2.7423 31 1 5.4654 0.8677 1.3041 32 1 5.9532 2.4119 2.0304 33 1 6.3472 -0.2215 3.5050 34 1 7.5537 0.3888 2.3449 35 1 8.3600 1.4120 4.2078 36 1 7.1604 2.6313 3.7451 37 1 7.0044 0.5544 5.9459 38 1 6.7840 2.3116 6.0559 39 1 5.8359 -0.7048 8.4138 40 1 5.1572 3.0415 4.1246 41 1 3.5089 2.4969 4.5329 42 1 1.2999 0.1841 2.1405 43 1 2.4177 -1.1284 1.5719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260381652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:29 Heat of formation + Delta-G solvation = 37.250031 kcal Electronic energy + Delta-G solvation = -19636.786117 eV Core-core repulsion = 16910.787096 eV Total energy + Delta-G solvation = -2725.999022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22979 -38.43063 -34.39595 -32.76513 -30.91590 -30.46373 -27.12182 -25.85972 -25.61453 -24.18047 -23.24674 -21.62284 -20.07941 -19.39246 -18.21068 -16.51412 -15.81658 -15.46283 -15.23888 -14.64992 -14.51797 -14.26742 -13.80169 -13.61891 -13.20348 -12.84511 -12.61608 -12.33184 -11.90338 -11.67175 -11.42233 -11.27763 -11.09970 -10.98317 -10.82163 -10.57228 -10.46535 -10.28126 -10.01820 -9.99422 -9.65454 -9.26952 -9.17778 -8.89396 -8.59357 -8.21606 -7.46787 -5.92429 -3.95987 3.33454 3.40371 3.42782 4.07523 4.27245 4.49593 4.68959 4.96405 5.05436 5.26919 5.34827 5.38927 5.44862 5.50087 5.60314 5.63967 5.69642 5.74531 5.77154 5.86832 5.97072 6.02505 6.10738 6.24620 6.27320 6.37980 6.40950 6.45978 6.60341 6.64331 6.81978 6.96700 7.04223 7.20128 7.25455 7.56314 7.75877 7.85422 8.03910 8.19875 8.34704 8.54554 9.08726 9.67116 11.15003 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.005854 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.202238 B = 4782.025887 C = 5682.738456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.483 5.483 3 C -0.001 4.001 4 C -0.109 4.109 5 C 0.072 3.928 6 N -0.550 5.550 7 C 0.081 3.919 8 C -0.113 4.113 9 C -0.122 4.122 10 C -0.099 4.099 11 C 0.050 3.950 12 H 0.043 0.957 13 C -0.513 4.513 14 H 0.051 0.949 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.082 3.918 22 C 0.011 3.989 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.006 0.994 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.258 0.742 40 H 0.022 0.978 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 2.722 -13.088 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.205 5.205 3 C -0.131 4.131 4 C -0.128 4.128 5 C -0.056 4.056 6 N -0.274 5.274 7 C -0.049 4.049 8 C -0.151 4.151 9 C -0.160 4.160 10 C -0.138 4.138 11 C 0.032 3.968 12 H 0.061 0.939 13 C -0.552 4.552 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.714 3.286 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.044 4.044 22 C -0.117 4.117 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.200 1.655 -13.390 14.130 hybrid contribution -0.621 1.536 1.402 2.170 sum -4.821 3.190 -11.988 13.309 Atomic orbital electron populations 1.22871 0.90021 1.02329 1.00864 1.68866 1.08901 1.18868 1.23844 1.23876 0.97315 0.91774 1.00087 1.22836 0.97581 0.96719 0.95640 1.22014 0.95381 0.94611 0.93588 1.58852 1.04668 1.57914 1.05938 1.20925 0.90349 0.97368 0.96234 1.21424 0.96275 1.00222 0.97195 1.21555 0.98703 0.97821 0.97895 1.21959 0.97955 1.01624 0.92232 1.18476 0.90921 0.95931 0.91519 0.93941 1.21284 1.23126 1.16764 0.94048 0.93039 1.24935 0.95125 0.95116 0.98634 1.69934 1.32626 1.20607 1.29506 0.86697 0.79331 0.78480 0.84052 1.20820 1.21366 1.20103 1.22104 0.99790 0.94825 0.87638 1.23909 0.96657 1.01137 0.90047 0.91728 0.91226 0.94571 0.90142 0.91512 0.87819 0.95467 0.90999 0.92137 0.97631 0.90245 0.93132 0.94262 0.94336 0.90608 0.94627 0.93213 0.96003 0.92107 0.91108 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.69 60.06 0.58 0.46 16 2 N -0.48 -6.01 6.73 -252.76 -1.70 -7.71 16 3 C 0.00 -0.01 7.29 -7.54 -0.05 -0.07 16 4 C -0.11 -1.42 4.01 -90.02 -0.36 -1.78 16 5 C 0.07 1.06 4.87 -3.82 -0.02 1.04 16 6 N -0.55 -9.82 3.95 -240.00 -0.95 -10.77 16 7 C 0.08 1.33 4.82 -6.74 -0.03 1.30 16 8 C -0.11 -2.00 5.65 -27.11 -0.15 -2.16 16 9 C -0.12 -2.35 5.31 -27.24 -0.14 -2.50 16 10 C -0.10 -2.35 4.74 -25.69 -0.12 -2.47 16 11 C 0.05 1.23 1.66 -92.44 -0.15 1.08 16 12 H 0.04 1.17 7.26 -51.92 -0.38 0.79 16 13 C -0.51 -13.96 8.30 -34.44 -0.29 -14.25 16 14 H 0.05 1.38 7.45 -52.49 -0.39 0.99 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.42 11.56 55.43 0.64 -24.78 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.08 1.70 4.87 -4.52 -0.02 1.67 16 22 C 0.01 0.15 7.28 -7.47 -0.05 0.09 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.36 7.52 -51.93 -0.39 -0.03 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 28 H 0.10 1.40 6.12 -51.93 -0.32 1.08 16 29 H 0.03 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.07 1.07 7.33 -51.93 -0.38 0.69 16 31 H 0.06 0.89 5.80 -51.93 -0.30 0.59 16 32 H 0.01 0.10 7.54 -51.93 -0.39 -0.30 16 33 H 0.08 1.60 7.11 -51.93 -0.37 1.23 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.04 0.72 6.57 -51.93 -0.34 0.37 16 37 H 0.08 1.99 6.72 -51.93 -0.35 1.64 16 38 H 0.03 0.87 7.96 -51.93 -0.41 0.46 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.02 0.45 6.66 -51.93 -0.35 0.10 16 41 H 0.06 1.27 6.88 -51.93 -0.36 0.91 16 42 H 0.07 0.95 7.28 -51.93 -0.38 0.57 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -27.92 318.23 -10.75 -38.67 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.60 Total: -0.58 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.92 Total: -15.90 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -2.01 Total: -43.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.92 -10.75 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.921 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds