Wall clock time and date at job start Mon Mar 30 2020 03:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47479 * 110.99965 * 2 1 4 4 C 1.53517 * 87.99753 * 138.66774 * 3 2 1 5 5 C 1.53001 * 114.17059 * 220.35597 * 4 3 2 6 6 N 1.46901 * 109.46963 * 185.00028 * 5 4 3 7 7 C 1.39785 * 110.99788 * 66.04874 * 6 5 4 8 8 C 1.54426 * 111.76653 * 189.12506 * 7 6 5 9 9 C 1.50753 * 109.03044 * 282.58718 * 8 7 6 10 10 C 1.54173 * 112.60707 * 93.01727 * 9 8 7 11 11 C 1.53819 * 111.97313 * 318.49049 * 10 9 8 12 12 H 1.09008 * 109.04702 * 79.52300 * 11 10 9 13 13 C 1.50693 * 109.05538 * 198.48966 * 11 10 9 14 14 H 1.07998 * 120.00493 * 119.99713 * 13 11 10 15 15 C 1.37881 * 119.99889 * 300.00443 * 13 11 10 16 16 N 1.31512 * 120.00205 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99725 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47327 * 90.00208 * 17 15 13 19 19 H 1.48503 * 109.47125 * 209.99835 * 17 15 13 20 20 H 1.48497 * 109.47549 * 329.99648 * 17 15 13 21 21 C 1.47634 * 110.99951 * 194.93704 * 6 5 4 22 22 C 1.47487 * 110.99585 * 95.96965 * 2 1 3 23 23 H 1.09000 * 109.47085 * 60.00397 * 1 2 3 24 24 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47617 * 300.00333 * 1 2 3 26 26 H 1.09002 * 113.47562 * 253.46722 * 3 2 1 27 27 H 1.09003 * 113.47677 * 23.87325 * 3 2 1 28 28 H 1.09000 * 114.16717 * 87.65445 * 4 3 2 29 29 H 1.08994 * 109.47074 * 305.00412 * 5 4 3 30 30 H 1.08998 * 109.46919 * 65.00120 * 5 4 3 31 31 H 1.08997 * 109.01881 * 309.71253 * 7 6 5 32 32 H 1.09003 * 109.01999 * 68.61063 * 7 6 5 33 33 H 1.09001 * 109.54500 * 42.45623 * 8 7 6 34 34 H 1.09001 * 109.54515 * 162.72196 * 8 7 6 35 35 H 1.08990 * 108.85811 * 213.82369 * 9 8 7 36 36 H 1.09001 * 108.85228 * 332.22003 * 9 8 7 37 37 H 1.09004 * 108.98257 * 79.13212 * 10 9 8 38 38 H 1.09003 * 108.98140 * 197.93514 * 10 9 8 39 39 H 0.97000 * 120.00208 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.74413 * 269.98718 * 21 6 5 41 41 H 1.08998 * 109.74413 * 30.71282 * 21 6 5 42 42 H 1.09004 * 113.47787 * 336.06095 * 22 2 1 43 43 H 1.09001 * 113.47615 * 106.47267 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0538 0.9139 1.0132 5 6 3.3346 1.9214 2.1300 6 7 4.4380 1.4304 2.9663 7 6 5.6346 1.3918 2.2447 8 6 6.7529 0.6709 3.0285 9 6 7.2944 1.6034 4.0820 10 6 6.5929 1.4301 5.4439 11 6 5.0730 1.2503 5.2897 12 1 4.8639 0.2191 5.0048 13 6 4.4069 1.5401 6.6100 14 1 3.6795 2.3349 6.6849 15 6 4.7261 0.7907 7.7225 16 7 5.6116 -0.1773 7.6313 17 14 3.9008 1.1506 9.3592 18 1 2.6610 0.3417 9.4769 19 1 4.8261 0.8022 10.4673 20 1 3.5593 2.5938 9.4348 21 6 4.5078 2.1738 4.2399 22 6 1.9974 -0.1432 1.3695 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4187 1.6803 -0.9585 27 1 1.2996 2.1099 0.4046 28 1 3.9579 0.5066 0.5607 29 1 3.6092 2.8812 1.6927 30 1 2.4411 2.0434 2.7423 31 1 5.4654 0.8677 1.3041 32 1 5.9532 2.4119 2.0304 33 1 6.3472 -0.2215 3.5050 34 1 7.5537 0.3888 2.3449 35 1 8.3600 1.4120 4.2078 36 1 7.1604 2.6313 3.7451 37 1 7.0044 0.5544 5.9459 38 1 6.7840 2.3116 6.0559 39 1 5.8359 -0.7048 8.4138 40 1 5.1572 3.0415 4.1246 41 1 3.5089 2.4969 4.5329 42 1 1.2999 0.1841 2.1405 43 1 2.4177 -1.1284 1.5719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:28 Heat of formation + Delta-G solvation = 18.780129 kcal Electronic energy + Delta-G solvation = -19637.587032 eV Core-core repulsion = 16910.787096 eV Total energy + Delta-G solvation = -2726.799937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28857 -39.86855 -36.08720 -34.49812 -32.49227 -31.82850 -28.45738 -27.35087 -26.81035 -25.75104 -24.81920 -22.89222 -21.48523 -20.52930 -19.98209 -18.37034 -17.07317 -16.75973 -16.49024 -16.28644 -15.78980 -15.65272 -15.25987 -15.10460 -14.61297 -14.16670 -14.00994 -13.54882 -13.41122 -13.15530 -12.89007 -12.82468 -12.64356 -12.43843 -12.26732 -12.23216 -11.94454 -11.65703 -11.50812 -11.40930 -11.17153 -10.99645 -10.97305 -10.57288 -10.29992 -9.86631 -8.86541 -8.04296 -6.15290 1.41393 1.42174 1.51687 2.45300 3.05979 3.14264 3.24329 3.61750 3.87663 4.06597 4.14392 4.21033 4.32745 4.38381 4.47512 4.52440 4.56465 4.59788 4.62755 4.71926 4.78155 4.79709 4.84285 4.88401 4.96303 4.97841 5.04305 5.11631 5.17006 5.30907 5.33681 5.38187 5.42112 5.55553 5.67284 5.74338 6.05922 6.12100 6.22393 6.39520 6.52667 6.78466 6.99800 7.51416 9.01644 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.005854 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.202238 B = 4782.025887 C = 5682.738456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.495 5.495 3 C 0.010 3.990 4 C -0.105 4.105 5 C 0.076 3.924 6 N -0.564 5.564 7 C 0.082 3.918 8 C -0.111 4.111 9 C -0.114 4.114 10 C -0.091 4.091 11 C 0.055 3.945 12 H 0.005 0.995 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.948 3.052 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.095 3.905 22 C 0.007 3.993 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.016 0.984 39 H 0.257 0.743 40 H 0.025 0.975 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 3.881 -14.722 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.217 5.217 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.051 4.051 6 N -0.288 5.288 7 C -0.048 4.048 8 C -0.149 4.149 9 C -0.151 4.151 10 C -0.130 4.130 11 C 0.036 3.964 12 H 0.023 0.977 13 C -0.572 4.572 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.774 3.226 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.032 4.032 22 C -0.122 4.122 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.770 2.821 -15.043 16.031 hybrid contribution -0.460 1.138 1.898 2.261 sum -5.230 3.959 -13.144 14.690 Atomic orbital electron populations 1.22915 0.88780 1.02772 1.01693 1.68845 1.10283 1.19790 1.22767 1.23855 0.96533 0.91415 1.00150 1.22761 0.97842 0.96231 0.95565 1.22030 0.93892 0.95726 0.93484 1.58718 1.06321 1.57947 1.05792 1.20968 0.89282 0.97977 0.96537 1.21417 0.97677 0.98578 0.97236 1.21448 0.98927 0.99022 0.95731 1.21763 0.97739 0.98983 0.94485 1.18369 0.91558 0.94647 0.91820 0.97654 1.21713 1.23221 1.16645 0.95574 0.93132 1.25696 0.95747 0.95019 1.02045 1.70084 1.33831 1.21467 1.30263 0.85712 0.78334 0.78615 0.79911 1.20360 1.21153 1.19253 1.21757 0.99050 0.94029 0.88326 1.23876 0.97023 1.00491 0.90772 0.90190 0.91096 0.94379 0.88708 0.90460 0.87968 0.93917 0.91573 0.89805 0.96604 0.93405 0.90008 0.92959 0.93086 0.94032 0.96487 0.93357 0.95673 0.92666 0.91525 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.24 9.69 127.69 1.24 1.00 16 2 N -0.49 -11.36 6.73 -953.58 -6.42 -17.77 16 3 C 0.01 0.19 7.29 83.58 0.61 0.80 16 4 C -0.10 -2.52 4.01 -10.41 -0.04 -2.56 16 5 C 0.08 2.10 4.87 86.30 0.42 2.52 16 6 N -0.56 -19.57 3.95 -913.24 -3.61 -23.18 16 7 C 0.08 2.51 4.82 88.07 0.42 2.93 16 8 C -0.11 -3.79 5.65 30.35 0.17 -3.62 16 9 C -0.11 -4.28 5.31 30.26 0.16 -4.12 16 10 C -0.09 -4.43 4.74 31.27 0.15 -4.28 16 11 C 0.06 2.77 1.66 -11.98 -0.02 2.75 16 12 H 0.01 0.31 7.26 -2.38 -0.02 0.29 16 13 C -0.53 -29.66 8.30 25.60 0.21 -29.45 16 14 H 0.05 2.75 7.45 -2.91 -0.02 2.73 16 15 C 0.01 0.76 5.30 84.66 0.45 1.21 16 16 N -0.92 -54.21 11.56 21.45 0.25 -53.97 16 17 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C 0.09 3.91 4.87 85.45 0.42 4.33 16 22 C 0.01 0.19 7.28 83.62 0.61 0.80 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 0.70 7.52 -2.39 -0.02 0.68 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.39 7.87 -2.39 -0.02 1.37 16 28 H 0.10 2.51 6.12 -2.39 -0.01 2.50 16 29 H 0.04 1.06 8.10 -2.39 -0.02 1.05 16 30 H 0.07 1.89 7.33 -2.39 -0.02 1.87 16 31 H 0.08 2.22 5.80 -2.39 -0.01 2.21 16 32 H 0.02 0.47 7.54 -2.39 -0.02 0.46 16 33 H 0.05 1.94 7.11 -2.39 -0.02 1.93 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.80 6.57 -2.39 -0.02 1.78 16 37 H 0.04 2.27 6.72 -2.38 -0.02 2.25 16 38 H 0.02 0.84 7.96 -2.39 -0.02 0.82 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.03 1.01 6.66 -2.39 -0.02 1.00 16 41 H 0.05 2.31 6.88 -2.39 -0.02 2.29 16 42 H 0.07 1.75 7.28 -2.39 -0.02 1.74 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -61.22 318.23 -2.00 -63.22 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.96 Total: 13.10 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 4.80 Total: -27.70 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -9.78 Total: -94.92 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -61.22 -2.00 -63.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.996 kcal (2) G-P(sol) polarization free energy of solvation -61.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds