Wall clock time and date at job start Mon Mar 30 2020 03:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47963 * 110.99759 * 2 1 4 4 C 1.53938 * 86.17992 * 222.41625 * 3 2 1 5 5 C 1.53003 * 113.73121 * 138.07792 * 4 3 2 6 6 C 1.53002 * 109.46828 * 175.00092 * 5 4 3 7 7 N 1.46900 * 109.47242 * 180.02562 * 6 5 4 8 8 C 1.46853 * 110.99782 * 45.78976 * 7 6 5 9 9 C 1.53030 * 109.52304 * 185.83958 * 8 7 6 10 10 C 1.53121 * 109.28009 * 300.82170 * 9 8 7 11 11 C 1.53126 * 109.16045 * 57.65256 * 10 9 8 12 12 C 1.46845 * 111.00114 * 169.99990 * 7 6 5 13 13 H 1.09005 * 109.45322 * 294.17185 * 12 7 6 14 14 C 1.50695 * 109.46150 * 54.14736 * 12 7 6 15 15 H 1.07999 * 120.00325 * 5.71946 * 14 12 7 16 16 C 1.37879 * 120.00175 * 185.72461 * 14 12 7 17 17 N 1.31512 * 120.00311 * 197.96847 * 16 14 12 18 18 Si 1.86802 * 119.99678 * 17.96352 * 16 14 12 19 19 H 1.48498 * 109.47061 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47431 * 300.00219 * 18 16 14 21 21 H 1.48501 * 109.47247 * 60.00545 * 18 16 14 22 22 C 1.47959 * 111.00024 * 260.64331 * 2 1 3 23 23 H 1.09000 * 109.47095 * 60.00085 * 1 2 3 24 24 H 1.08996 * 109.46544 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46709 * 300.00384 * 1 2 3 26 26 H 1.09004 * 113.75942 * 108.10027 * 3 2 1 27 27 H 1.09001 * 113.75901 * 336.73286 * 3 2 1 28 28 H 1.08997 * 113.73730 * 269.25589 * 4 3 2 29 29 H 1.08997 * 109.46985 * 55.00839 * 5 4 3 30 30 H 1.09001 * 109.47122 * 294.99871 * 5 4 3 31 31 H 1.09004 * 109.47311 * 59.99958 * 6 5 4 32 32 H 1.09000 * 109.47396 * 300.00244 * 6 5 4 33 33 H 1.09002 * 109.45964 * 65.82315 * 8 7 6 34 34 H 1.09000 * 109.45135 * 305.85276 * 8 7 6 35 35 H 1.08995 * 109.50615 * 180.87828 * 9 8 7 36 36 H 1.09004 * 109.50244 * 60.76071 * 9 8 7 37 37 H 1.08996 * 109.52175 * 297.74961 * 10 9 8 38 38 H 1.09000 * 109.52308 * 177.55657 * 10 9 8 39 39 H 1.08992 * 109.50084 * 182.40055 * 11 10 9 40 40 H 1.08999 * 109.53251 * 62.30878 * 11 10 9 41 41 H 0.96999 * 120.00226 * 354.78352 * 17 16 14 42 42 H 1.09003 * 113.76249 * 23.25888 * 22 2 1 43 43 H 1.08999 * 113.75481 * 251.89773 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0211 0.8793 -1.0360 5 6 3.2611 1.8571 -2.1881 6 6 4.3768 1.3214 -3.0876 7 7 4.6077 2.2604 -4.1935 8 6 4.6705 3.6438 -3.7047 9 6 4.7654 4.6024 -4.8937 10 6 6.0179 4.2726 -5.7104 11 6 5.9504 2.8124 -6.1665 12 6 5.8211 1.9056 -4.9406 13 1 6.6931 2.0352 -4.2994 14 6 5.7343 0.4686 -5.3859 15 1 4.8278 -0.0945 -5.2198 16 6 6.8123 -0.1276 -6.0053 17 7 6.6433 -1.2301 -6.7020 18 14 8.5127 0.6311 -5.8551 19 1 9.4913 -0.1947 -6.6071 20 1 8.4925 2.0063 -6.4151 21 1 8.9060 0.6850 -4.4241 22 6 1.9993 -0.2246 -1.3629 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.4460 1.6803 0.9483 27 1 1.3010 2.1198 -0.3941 28 1 3.9459 0.5069 -0.5954 29 1 3.5527 2.8274 -1.7864 30 1 2.3456 1.9648 -2.7699 31 1 4.0853 0.3509 -3.4894 32 1 5.2923 1.2136 -2.5059 33 1 5.5479 3.7650 -3.0695 34 1 3.7719 3.8666 -3.1293 35 1 4.8277 5.6281 -4.5302 36 1 3.8817 4.4915 -5.5221 37 1 6.9044 4.4209 -5.0937 38 1 6.0664 4.9247 -6.5825 39 1 6.8592 2.5592 -6.7123 40 1 5.0856 2.6728 -6.8152 41 1 5.7768 -1.6657 -6.7181 42 1 1.3010 0.0441 -2.1557 43 1 2.4460 -1.2088 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260387248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:45 Heat of formation + Delta-G solvation = 28.459059 kcal Electronic energy + Delta-G solvation = -19526.365348 eV Core-core repulsion = 16799.985121 eV Total energy + Delta-G solvation = -2726.380227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98048 -38.32241 -34.03528 -32.91498 -31.34251 -30.08241 -28.17123 -26.11848 -25.12498 -24.09047 -22.78739 -20.84767 -20.32259 -19.51282 -18.74492 -17.49143 -15.86683 -15.66858 -15.08026 -14.72583 -14.46431 -14.06649 -13.61304 -13.44782 -13.36511 -12.78031 -12.72083 -12.50205 -12.42002 -11.73860 -11.61296 -11.37576 -11.15376 -10.98842 -10.94115 -10.82913 -10.43724 -10.38912 -10.22818 -10.07640 -9.79642 -9.73149 -9.28301 -8.85481 -8.69776 -8.19849 -7.26298 -6.43202 -4.01334 3.37864 3.42623 3.60203 3.93622 4.45779 4.49662 4.66109 4.94844 5.01530 5.22584 5.28364 5.39656 5.42961 5.44399 5.51256 5.56433 5.58972 5.66459 5.72311 5.75897 5.87140 5.90411 6.03505 6.09317 6.17814 6.23754 6.24327 6.34193 6.39171 6.53191 6.60637 6.66752 6.70160 6.81074 6.95178 6.98769 7.06453 7.40239 7.82699 8.09731 8.37326 8.49323 9.01721 9.65953 10.97676 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.005997 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.001478 B = 4668.266925 C = 5543.319418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.489 5.489 3 C 0.003 3.997 4 C -0.110 4.110 5 C -0.116 4.116 6 C 0.075 3.925 7 N -0.527 5.527 8 C 0.048 3.952 9 C -0.111 4.111 10 C -0.125 4.125 11 C -0.118 4.118 12 C 0.196 3.804 13 H -0.012 1.012 14 C -0.590 4.590 15 H 0.063 0.937 16 C 0.031 3.969 17 N -0.907 5.907 18 Si 1.041 2.959 19 H -0.286 1.286 20 H -0.273 1.273 21 H -0.286 1.286 22 C 0.006 3.994 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.267 0.733 42 H 0.072 0.928 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.695 8.361 10.081 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.126 4.126 4 C -0.129 4.129 5 C -0.154 4.154 6 C -0.052 4.052 7 N -0.251 5.251 8 C -0.081 4.081 9 C -0.149 4.149 10 C -0.163 4.163 11 C -0.156 4.156 12 C 0.089 3.911 13 H 0.005 0.995 14 C -0.628 4.628 15 H 0.082 0.918 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.871 3.129 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.213 1.213 22 C -0.122 4.122 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.378 7.693 9.773 13.978 hybrid contribution -1.308 0.727 0.452 1.563 sum -7.685 8.420 10.226 15.314 Atomic orbital electron populations 1.22847 0.90129 1.02212 1.00781 1.68461 1.08698 1.18653 1.25277 1.24007 0.97274 0.91310 1.00003 1.22961 0.98111 0.96050 0.95807 1.21839 1.00170 0.97915 0.95445 1.21857 0.95410 0.97354 0.90626 1.61959 1.40284 0.99854 1.23049 1.22155 0.99117 0.90895 0.95887 1.21523 0.98921 0.97061 0.97374 1.21692 0.97076 0.98754 0.98800 1.22057 1.01774 0.91954 0.99787 1.19536 0.85626 0.95853 0.90090 0.99453 1.21980 1.01948 0.95307 1.43551 0.91845 1.25639 1.03163 0.96631 0.91984 1.70852 1.28009 1.20929 1.34336 0.84090 0.76188 0.76048 0.76617 1.21151 1.19998 1.21288 1.24087 0.97039 1.00768 0.90328 0.94767 0.91331 0.91700 0.89724 0.91412 0.88379 0.91880 0.91620 0.90154 0.95810 0.96354 0.91575 0.93000 0.91678 0.93313 0.93193 0.91978 0.92060 0.92241 0.91017 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.07 0.58 0.47 16 2 N -0.49 -6.14 6.56 -246.58 -1.62 -7.75 16 3 C 0.00 0.03 7.55 -2.76 -0.02 0.01 16 4 C -0.11 -1.45 3.84 -89.68 -0.34 -1.79 16 5 C -0.12 -1.68 4.32 -26.73 -0.12 -1.80 16 6 C 0.08 1.44 4.64 -3.82 -0.02 1.42 16 7 N -0.53 -10.94 4.63 -228.08 -1.06 -12.00 16 8 C 0.05 0.83 4.85 -3.83 -0.02 0.81 16 9 C -0.11 -1.80 6.09 -26.65 -0.16 -1.97 16 10 C -0.13 -2.26 6.00 -26.60 -0.16 -2.42 16 11 C -0.12 -2.60 5.06 -26.65 -0.13 -2.74 16 12 C 0.20 4.68 1.37 -68.88 -0.09 4.59 16 13 H -0.01 -0.29 6.78 -51.93 -0.35 -0.65 16 14 C -0.59 -16.29 8.14 -34.44 -0.28 -16.57 16 15 H 0.06 1.89 6.79 -52.49 -0.36 1.54 16 16 C 0.03 0.89 5.33 -17.82 -0.10 0.79 16 17 N -0.91 -27.64 13.70 55.43 0.76 -26.89 16 18 Si 1.04 25.24 26.38 -169.99 -4.48 20.75 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.13 5.61 56.52 0.32 -5.82 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.01 0.08 7.52 -2.77 -0.02 0.06 16 23 H 0.03 0.34 7.62 -51.93 -0.40 -0.05 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 28 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 29 H 0.06 0.86 6.21 -51.93 -0.32 0.54 16 30 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 31 H 0.08 1.72 6.65 -51.93 -0.35 1.37 16 32 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 1.00 5.81 -51.93 -0.30 0.70 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.44 4.85 -51.93 -0.25 1.18 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.27 8.14 8.73 -40.82 -0.36 7.79 16 42 H 0.07 0.93 7.37 -51.93 -0.38 0.54 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -29.41 319.60 -10.30 -39.71 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.83 Total: 0.49 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -0.89 Total: -19.13 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -1.91 Total: -46.64 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.48 Total: 20.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.41 -10.30 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.169 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds